View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16628_low_9 (Length: 436)
Name: NF16628_low_9
Description: NF16628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16628_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 11 - 418
Target Start/End: Original strand, 19133836 - 19134245
Alignment:
| Q |
11 |
agcagagacatatagtttctgtaagattcctctggttgcttgaaacattagtcttcactgcagactttgactcttccttggatgatgaagcatgaatgtg |
110 |
Q |
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|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
19133836 |
agcagatacatatagtttctataagattcctctggttgcttgaaacattagtcttcactgcagactttgactcctccttggatgatgaagcatgaatgtg |
19133935 |
T |
|
| Q |
111 |
ttatgtcatccccatgtca-gatacaagaagcttccctactttactaaaattgaaaaaactcttaaaatttgcagtataattatcaagcagttacacaca |
209 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |
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| T |
19133936 |
ttatgtcatccccatgtcaagatacaagaagcttccctactttactaaaattgaaaacactcttaaaatttgcagtataattatcacgcagttacacacg |
19134035 |
T |
|
| Q |
210 |
gtaatcaccattggatattg-tatgagatcaaaccattcatattatatagttagtaaactaatatttaatgatctcggccattgatttgaaatcggaaag |
308 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19134036 |
gtaatcaccattggatattgatatgagatcaaaccattcatattatatagttagtaaactaatatttaatgatctcggccattgatttgaaatcggaaag |
19134135 |
T |
|
| Q |
309 |
tggagatctagcatccaaattctacaaaaacggtttataaagtgagaactattcactgatcgcgactcataaacacattttcagatcatattattcgata |
408 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |
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| T |
19134136 |
tcgagatctagcatccaaattctacaaaaacggtttataaagtgagaactattcactgatcgctactcataaacacattttcagatcatattattcaatg |
19134235 |
T |
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| Q |
409 |
aagtacttct |
418 |
Q |
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|||||||||| |
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| T |
19134236 |
aagtacttct |
19134245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 11 - 418
Target Start/End: Original strand, 20733235 - 20733644
Alignment:
| Q |
11 |
agcagagacatatagtttctgtaagattcctctggttgcttgaaacattagtcttcactgcagactttgactcttccttggatgatgaagcatgaatgtg |
110 |
Q |
| |
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|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
20733235 |
agcagatacatatagtttctataagattcctctggttgcttgaaacattagtcttcactgcagactttgactcctccttggatgatgaagcatgaatgtg |
20733334 |
T |
|
| Q |
111 |
ttatgtcatccccatgtca-gatacaagaagcttccctactttactaaaattgaaaaaactcttaaaatttgcagtataattatcaagcagttacacaca |
209 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |
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| T |
20733335 |
ttatgtcatccccatgtcaagatacaagaagcttccctactttactaaaattgaaaacactcttaaaatttgcagtataattatcacgcagttacacacg |
20733434 |
T |
|
| Q |
210 |
gtaatcaccattggatattg-tatgagatcaaaccattcatattatatagttagtaaactaatatttaatgatctcggccattgatttgaaatcggaaag |
308 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20733435 |
gtaatcaccattggatattgatatgagatcaaaccattcatattatatagttagtaaactaatatttaatgatctcggccattgatttgaaatcggaaag |
20733534 |
T |
|
| Q |
309 |
tggagatctagcatccaaattctacaaaaacggtttataaagtgagaactattcactgatcgcgactcataaacacattttcagatcatattattcgata |
408 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |
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| T |
20733535 |
tcgagatctagcatccaaattctacaaaaacggtttataaagtgagaactattcactgatcgctactcataaacacattttcagatcatattattcaatg |
20733634 |
T |
|
| Q |
409 |
aagtacttct |
418 |
Q |
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|||||||||| |
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|
| T |
20733635 |
aagtacttct |
20733644 |
T |
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