View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16629_high_11 (Length: 490)
Name: NF16629_high_11
Description: NF16629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16629_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 65 - 479
Target Start/End: Original strand, 39138743 - 39139157
Alignment:
| Q |
65 |
atttatgaaaagggtttggaagcgttgaaagagcattttaagaactcaaagttcccgtgtgagatggagcattacctgcccgtggtgttttcaccgcctc |
164 |
Q |
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| T |
39138743 |
atttatgaaaagggtttggaatcgttgaaagagcattttaagaactcaaagttcccgtgtgagatggagcattacctgccagtggtgttttcaccgcctc |
39138842 |
T |
|
| Q |
165 |
gagatggaaaacaattgacggagccaattccagtggcggggaacatgctacaaattggtgctgctccttctgtagcttatgagatggaagctcaagatca |
264 |
Q |
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| T |
39138843 |
gagatggaaaacaattgacggagccaattccagtggcggggaacatgctacaaattggtgctgctccttctgtagctgatgagatggaaggtcaagatca |
39138942 |
T |
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| Q |
265 |
tagagtaggtagtggtggctgtgacatgatcagcagaaaaagtggcggcataggggatgatgatgatgataaaacagatgtgaagtgaagtaaagaagct |
364 |
Q |
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| T |
39138943 |
tagagtaggtagtggtggctgtgacgtgatcagcagaaaaagtggcggcataggtgatgatgatgatgataaaacagatgtgaagtgaagtaaagaagct |
39139042 |
T |
|
| Q |
365 |
gggtgtgtaatagtgtacatgaatgtgcattaatttacctagcacatcaagaattaaaggtggttgttgagcaacgagccacacttgtgttctcttttca |
464 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39139043 |
gggtgtgtaatagtgtacatgaatgtgcattaatttacctagcacatcaagaattaaaggtggttgttgagcaacgagccacacttgtgttctcttttca |
39139142 |
T |
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| Q |
465 |
tagtgctctctgctc |
479 |
Q |
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| T |
39139143 |
tagtgctctctgctc |
39139157 |
T |
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