View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16629_high_16 (Length: 460)
Name: NF16629_high_16
Description: NF16629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16629_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 426; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 9 - 442
Target Start/End: Original strand, 39567241 - 39567674
Alignment:
| Q |
9 |
aataaactataaactcagataacggagtcagagataaagaaataatgaaaaaggatatgatagttttgacggggttgaacttgtaatgaacaggagaagc |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39567241 |
aataaactataaactcagataacggagtcagagataaagaaataatgaaaaaggatatgatagttttgacggggttgaacttgtaatgaacaggagaagc |
39567340 |
T |
|
| Q |
109 |
aggacaagcaagatgatagatctgatcaacttcaagaagaagaggctcaacgacgtcgtgtcgaataagctcaaatctcggattaccaaaatgatgcata |
208 |
Q |
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| T |
39567341 |
aggacaagcaagatgatagatctgatcaacttcaagaagaagaggctcaacgacgtcgtgtcgaataagctcaaatctcggattaccaaaatgatgcata |
39567440 |
T |
|
| Q |
209 |
acgttctcttttctaccagtgaagaaattatcaacaacaatcacactatcccctctcgccatcaaccgatccactagatgggacccaacgaatcccgctc |
308 |
Q |
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| T |
39567441 |
acgttctcttttctaccggtgaagaaattatcaacaacaatcacactatcccctctcgccatcaaccgatccactagatgggacccaacgaatcccgctc |
39567540 |
T |
|
| Q |
309 |
caccagtcaccacgatccgcagccccttcctctttatccccaacggaatcttcccggacgaatgaaccaccgaggcggcgcgttgcttatacactgcagg |
408 |
Q |
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| T |
39567541 |
caccagtcaccacgatccgcagccccttcctttttatccccaacggaatcttcccggacgaatgaaccaccgaggcggcgcgttgcttatacactgcagg |
39567640 |
T |
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| Q |
409 |
tgtggtctttgactcgcggtcgaagtacgagatc |
442 |
Q |
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| T |
39567641 |
tgtggtctttgactcgcggtcgaagtacgagatc |
39567674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 56 - 144
Target Start/End: Complemental strand, 29127210 - 29127122
Alignment:
| Q |
56 |
aaaaaggatatgatagttttgacggggttgaacttgtaatgaacaggagaagcaggacaagcaagatgatagatctgatcaacttcaag |
144 |
Q |
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|||||||||||||| || |||| ||||| |||| ||||||||||| ||||||||||| ||||||||||||||||||||||| ||||| |
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| T |
29127210 |
aaaaaggatatgattgtcttgatagggttatacttataatgaacaggtgaagcaggacaggcaagatgatagatctgatcaacctcaag |
29127122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 55 - 288
Target Start/End: Complemental strand, 49755982 - 49755749
Alignment:
| Q |
55 |
gaaaaaggatatgatagttttgacggggttgaacttgtaatgaacaggagaagcaggacaagcaagatgatagatctgatcaacttcaagaagaagaggc |
154 |
Q |
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||||||||||||||| || ||||| || || ||||||||||||||||| |||||||| ||||| | |||||||||||||||||||||||||||| ||| |
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| T |
49755982 |
gaaaaaggatatgatggtcttgacaggattaaacttgtaatgaacaggggaagcagggcaagccaagtgatagatctgatcaacttcaagaagaataggt |
49755883 |
T |
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| Q |
155 |
tcaacgacgtcgtgtcgaataagctcaaatctcggattaccaaaatgatgcataacgttctcttttctaccagtgaagaaattatcaacaacaatcacac |
254 |
Q |
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||||| || || |||| |||||| ||||| | |||||||||| |||||| | ||| |||||||| || ||||| || ||||||||| || |||||| |
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| T |
49755882 |
tcaacaacatcatgtctaataagttcaaaattgggattaccaatatgatgaacaacattctctttccttccagtaaaataattatcaatcacgatcacat |
49755783 |
T |
|
| Q |
255 |
tatcccctctcgccatcaaccgatccactagatg |
288 |
Q |
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|||| ||||| | ||||| |||||||| ||||| |
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| T |
49755782 |
tatcacctctttcaatcaaacgatccacaagatg |
49755749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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