View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16629_high_17 (Length: 457)
Name: NF16629_high_17
Description: NF16629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16629_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 173; Significance: 7e-93; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 15 - 259
Target Start/End: Complemental strand, 35766336 - 35766092
Alignment:
| Q |
15 |
acaacatggaagaaaaacgcgacgtgactctaattatcgataattctctccttgtgaagaagtcctttgccgatcttggaatcatacctactggatgggg |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
35766336 |
acaacatggaagaaaaacgcgacgtgactctaattatcgataattctctcctagtgaagaagtcctttgccgatcttggaatcgtacctactggatgggg |
35766237 |
T |
|
| Q |
115 |
ggatgaagaagaaaaagaacaagtaacaaagcctcctgagccaaattatgcttctcatggatgggaattgaaccaacttgaaaataatgaaacgaactcc |
214 |
Q |
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||| ||||| |||||||| | |||| ||| ||| |||| ||||||||||||||||| ||||||||||||||||||| ||||||| ||||||| |||||| |
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| T |
35766236 |
ggacgaagaggaaaaagatgaggtaagaaaaccttctgaaccaaattatgcttctcaaggatgggaattgaaccaacatgaaaatgatgaaacaaactcc |
35766137 |
T |
|
| Q |
215 |
tgggaacggtattgggcttctgttggtgaacgtgcaaaagaatat |
259 |
Q |
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|||||||| |||||||||||||||| | ||||||||||||||||| |
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| T |
35766136 |
tgggaacgttattgggcttctgttgataaacgtgcaaaagaatat |
35766092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 260 - 432
Target Start/End: Complemental strand, 35766055 - 35765889
Alignment:
| Q |
260 |
attcagagggagcactatggtagcaacttgcataacatagtgtatcaaggaagaaatggtcggaatgggaattggggaacatgggatggttacaacagaa |
359 |
Q |
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||||||||||||| || |||| ||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||| || ||||||| |
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| T |
35766055 |
attcagagggagcgctttggtggcaacttgcataacaa---gtatcaaggaagaaatggtgggagtgggaattggggaacatgggatggatataacagaa |
35765959 |
T |
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| Q |
360 |
ggagagaaaacaacatgccatggtctaagaaccctggatatcatcatggcactaatgagtatcacatgaatag |
432 |
Q |
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|||||| |||||||| |||||||||||||||||||||||||||||||||||| ||| ||||| |||||||| |
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| T |
35765958 |
ggagag---acaacatgtcatggtctaagaaccctggatatcatcatggcactagtgactatcagatgaatag |
35765889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 260 - 432
Target Start/End: Complemental strand, 35755429 - 35755257
Alignment:
| Q |
260 |
attcagagggagcactatggtagcaacttgcataacatagtgt-atcaaggaagaaatggtcggaatgggaattggggaacatgggatggttacaacaga |
358 |
Q |
| |
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||||||||||||||||||||| | |||||||||||| ||| | ||||||||||||||| ||| |||||||||||||||||||||||| || | |||| |
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| T |
35755429 |
attcagagggagcactatggtggtgacttgcataaca-agtaccaacaaggaagaaatggtgggagtgggaattggggaacatgggatggatatagcaga |
35755331 |
T |
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| Q |
359 |
aggagagaaaacaacatgccatggtctaagaaccctggatatcatcatggcactaatgagtatcacatgaatag |
432 |
Q |
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|||||||||||||||||| |||||||||||| ||||| | ||||| |||||| |||||||||||| |||||||| |
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| T |
35755330 |
aggagagaaaacaacatgtcatggtctaagagccctgaaaatcattatggcaataatgagtatcagatgaatag |
35755257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 100 - 259
Target Start/End: Complemental strand, 35760768 - 35760612
Alignment:
| Q |
100 |
acctactggatggggggatgaagaagaaaaagaacaagtaacaaagcctcctgagccaaattatgcttctcatggatgggaattgaaccaacttgaaaat |
199 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |||||||||||| |||| || ||||||||| |||| |||||||||| |||||||| ||||||| |
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| T |
35760768 |
acctactggatggggggacgaagaagaaaaagaa---gtaacaaagccttctgaaccgaattatgctgctcagggatgggaatcgaaccaacatgaaaat |
35760672 |
T |
|
| Q |
200 |
aatgaaacgaactcctgggaacggtattgggcttctgttggtgaacgtgcaaaagaatat |
259 |
Q |
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|||||||| ||||| ||||||| |||| | ||| |||||| ||||| | ||||||||||| |
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| T |
35760671 |
aatgaaacaaactcttgggaacagtatcgtgctcctgttgttgaacattcaaaagaatat |
35760612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 329 - 432
Target Start/End: Complemental strand, 35798948 - 35798845
Alignment:
| Q |
329 |
aattggggaacatgggatggttacaacagaaggagagaaaacaacatgccatggtctaagaaccctggatatcatcatggcactaatgagtatcacatga |
428 |
Q |
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|||||||||||||||||||| || ||||||| || ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
35798948 |
aattggggaacatgggatggatataacagaaagaaagaaaacaacatgtcttggtctaagaaccctggatatcatcatggcactaatgagtatcagatga |
35798849 |
T |
|
| Q |
429 |
atag |
432 |
Q |
| |
|
|||| |
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|
| T |
35798848 |
atag |
35798845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 329 - 434
Target Start/End: Complemental strand, 35789320 - 35789215
Alignment:
| Q |
329 |
aattggggaacatgggatggttacaacagaaggagagaaaacaacatgccatggtctaagaaccctggatatcatcatggcactaatgagtatcacatga |
428 |
Q |
| |
|
|||||||| ||||||||||| || ||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||| |||||||||||||| |||| |
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| T |
35789320 |
aattgggggacatgggatggatataacagaaggagagaaaacaacatatcatggtctacgaaccctggatatgatcatggaactaatgagtatcagatga |
35789221 |
T |
|
| Q |
429 |
atagtg |
434 |
Q |
| |
|
|||||| |
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| T |
35789220 |
atagtg |
35789215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 260 - 405
Target Start/End: Complemental strand, 35785555 - 35785413
Alignment:
| Q |
260 |
attcagagggagcactatggtagcaacttgcataacatagtgtatcaaggaagaaatggtcggaatgggaattggggaacatgggatggttacaacagaa |
359 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||| | |||||||||||||||||| ||||| | ||||||| |||||||||||| || ||||||| |
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| T |
35785555 |
attcagagggagaactatggtggcaacttgcataacaaa---tatcaaggaagaaatggttggaatagtaattgggcaacatgggatgggtataacagaa |
35785459 |
T |
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| Q |
360 |
ggagagaaaacaacatgccatggtctaagaaccctggatatcatca |
405 |
Q |
| |
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|||||||||||| ||| | |||||| ||||||||| |||||||| |
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| T |
35785458 |
agagagaaaacaagatgtctcggtctatgaaccctggttatcatca |
35785413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 107 - 221
Target Start/End: Complemental strand, 35755618 - 35755504
Alignment:
| Q |
107 |
ggatggggggatgaagaagaaaaagaacaagtaacaaagcctcctgagccaaattatgcttctcatggatgggaattgaaccaacttgaaaataatgaaa |
206 |
Q |
| |
|
||||||||||| ||||||||||||||| |||| | ||||||| ||||||||||||||||| ||| |||||||||| || |||| |||||||||||||| |
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| T |
35755618 |
ggatggggggacgaagaagaaaaagaagaagttagaaagccttctgagccaaattatgctggtcagggatgggaatcaaatcaacatgaaaataatgaaa |
35755519 |
T |
|
| Q |
207 |
cgaactcctgggaac |
221 |
Q |
| |
|
| ||||| ||||||| |
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| T |
35755518 |
caaactcttgggaac |
35755504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 301 - 432
Target Start/End: Complemental strand, 35760537 - 35760409
Alignment:
| Q |
301 |
gtatcaaggaagaaatggtcggaatgggaattggggaacatgggatggttacaacagaaggagagaaaacaacatgccatggtctaagaaccctggatat |
400 |
Q |
| |
|
|||||||||||||||||| || |||| ||||||||| |||||||||| || ||||||| ||||||| |||||| | |||||||| ||||| ||| || |
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| T |
35760537 |
gtatcaaggaagaaatggcgggcatggaaattggggagcatgggatggatataacagaaagagagaa---aacatgtcgtggtctaataaccccggacat |
35760441 |
T |
|
| Q |
401 |
catcatggcactaatgagtatcacatgaatag |
432 |
Q |
| |
|
||||||| |||||||| ||||| |||||||| |
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|
| T |
35760440 |
tatcatggtactaatgaatatcagatgaatag |
35760409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 100 - 212
Target Start/End: Complemental strand, 35799201 - 35799092
Alignment:
| Q |
100 |
acctactggatggggggatgaagaagaaaaagaacaagtaacaaagcctcctgagccaaattatgcttctcatggatgggaattgaaccaacttgaaaat |
199 |
Q |
| |
|
|||||||||||||||||| |||||||| ||| | ||||||||||| |||| |||||||||||| ||| ||||| |||| ||||||| ||||||| |
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|
| T |
35799201 |
acctactggatggggggacgaagaagac---gaaaagttaacaaagccttctgaaccaaattatgctgctctgggatgcgaatcaaaccaacatgaaaat |
35799105 |
T |
|
| Q |
200 |
aatgaaacgaact |
212 |
Q |
| |
|
|||||||| |||| |
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|
| T |
35799104 |
aatgaaacaaact |
35799092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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