View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16629_high_19 (Length: 449)
Name: NF16629_high_19
Description: NF16629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16629_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 370; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 18 - 440
Target Start/End: Complemental strand, 42260805 - 42260384
Alignment:
| Q |
18 |
atttaccttggtccattacttgtgaattcaatacattcacatccattgattgaattggctaaactaattttttatagctgtataccaaacctttcaattg |
117 |
Q |
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| T |
42260805 |
atttaccttggtccattacttgtgaattcaatacattcacatccattgattgaattggctaaactaattttttatagctgtataccaaacctttcaattg |
42260706 |
T |
|
| Q |
118 |
atgtttcatttgtctggtccatttcaattgannnnnnnaatgtaaacgaactctaaattcataggctcgtgtgttcaattgacaatcgtttatttccttg |
217 |
Q |
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| T |
42260705 |
atgtttcatttgtctggtccatttcaattgatctttttaacgtaaacaaactctaaattcataggctcgtgtgttcaattgacaatcgtttatttccttg |
42260606 |
T |
|
| Q |
218 |
tgttgcattgcatgttttgatctaagaatgtggtaaattccctctcaaacttgtttgcccaaaagaagaaaaaagaatttcgcattacttgccacaattg |
317 |
Q |
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| T |
42260605 |
tgttgcattgcatgttttgatctaagaatgtgataa-ttccctctcaaacttgtttgcccaaaagaagaaaaaagaatttggcattacttgccacaattg |
42260507 |
T |
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| Q |
318 |
atatttagcgtgtcaataaattaaacactagttttgtttcttctgtgttttgttgtattctttgatcttagaatgttgtatttatctctcaaacttgttt |
417 |
Q |
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| T |
42260506 |
atatttagcgtgtcattaaattaaacactagttttgtttcttctgtgttttgttgtactctttgatcttagaatgttgtatttatctctcaaacttgttt |
42260407 |
T |
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| Q |
418 |
gcccaaaataagtaaagaataat |
440 |
Q |
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| T |
42260406 |
gcccaaaataagtaaagaataat |
42260384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 237 - 382
Target Start/End: Complemental strand, 42261079 - 42260943
Alignment:
| Q |
237 |
atctaagaatgtggtaaattccctctcaaacttgtttgcccaaaagaagaaaaaagaatttcgcattacttgccacaattgatatttagcgtgtcaataa |
336 |
Q |
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| T |
42261079 |
atctaagaatgtggtaa-ttctctctcaagtttgtttgcccaaaaaaagaaa-------ttggcattatttgccactgttaatatttagagtg-cattaa |
42260989 |
T |
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| Q |
337 |
attaaacactagttttgtttcttctgtgttttgttgtattctttga |
382 |
Q |
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|||||| ||||||||||||| |||||| ||||||||| |||||||| |
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| T |
42260988 |
attaaaaactagttttgttttttctgtattttgttgtgttctttga |
42260943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 242 - 324
Target Start/End: Complemental strand, 42261224 - 42261142
Alignment:
| Q |
242 |
agaatgtggtaaattccctctcaaacttgtttgcccaaaagaagaaaa-aagaatttcgcattacttgccacaattgatattta |
324 |
Q |
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| T |
42261224 |
agaatgtggtaattttc-tctcaaatttgtttgcccaaaagaagaaaacaataatttggcattatttgctacaactgatattta |
42261142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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