View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16629_high_2 (Length: 677)
Name: NF16629_high_2
Description: NF16629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16629_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 481; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 12 - 610
Target Start/End: Original strand, 23444952 - 23445536
Alignment:
| Q |
12 |
atgaaaggaaaaagagcatctgggttgcaggttttagactatgacatatgtccactacacaagtagtcaagtcagggacccacccacccccacacaactt |
111 |
Q |
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| T |
23444952 |
atgaaaggaaaaagagcatctgggttgcaggttttagactatgacatatgtccactacacaagtagtcaagtcagggacccacccacccccacacaactt |
23445051 |
T |
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| Q |
112 |
tgttgcactttgatgtacgaaaacgcgtcaataatgtgtatgaaaattgaaaggaagtagtccccagccccacactctctgctgctgaactttcaaagaa |
211 |
Q |
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| T |
23445052 |
tgttgcactttgatgtacgaaaacgcgtcaataatgtgtatgaaaattgaaaggaagtagtccccagccccacactct--gctgctgaactttcaaagaa |
23445149 |
T |
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| Q |
212 |
gttgcacataacatagtttatcaagagtaaagtagagaaatgtgttctataaagcaaaggttaagacattagtctcatcaatttttcttctacaataaaa |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23445150 |
gttgcacataacatagtttatcaagagtaaagtagagaaatgtgttctataaagcaaaggttaagacattagtctcatcaatttttcttctacaataaaa |
23445249 |
T |
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| Q |
312 |
cttatttttactttctcttgcatatcaaaatgtccaaagccatgaccttagtgttgctcgtcctcctagttttgtctcttttcactacggtgctttctga |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
23445250 |
cttatttttactttctcttgcatatcaaaatgtccaaagccatgaccttagtgttgctcctcctcctagttttgtctcttttcactacggtgctttctga |
23445349 |
T |
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| Q |
412 |
agaggttgagactcttcccgccacttactctcctacccatattcacatgacattgccttccacaggtagtagacgcatgctagggttagccggcgttttt |
511 |
Q |
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| T |
23445350 |
agaggttgagactcttcccgccacttactctcctacccatattcacatgacattgccttccaccg---gtagacgcatgctagggttcgccggcgttttt |
23445446 |
T |
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| Q |
512 |
gagggtctgggtcagaagtttggaccaactgtaaaaaagcatagtaaagaaatcgtagaccacgcaaaagatgttgtagactttgctaaggaagtttcc |
610 |
Q |
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|||| |||| ||||| |||||||| |||||||| || ||||||||||| | ||||||||||||| ||||||| ||||| ||||||||||| |
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| T |
23445447 |
gagg---agggt------gttggagcaactgtagaaaagcatggtgaagaaatcgtaaaacacgcaaaagatgctgtagacgttgctcaggaagtttcc |
23445536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 294 - 474
Target Start/End: Original strand, 23430439 - 23430619
Alignment:
| Q |
294 |
ttttcttctacaataaaacttatttttactttctcttgcatatcaaaatgtccaaagccatgaccttagtgttgctcgtcctcctagttttgtctctttt |
393 |
Q |
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||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||| ||||||||||| | ||||| | ||||||||| ||||| |
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| T |
23430439 |
ttttcttctacaataaagcttattattactttctcttgcatacaaaaatgtccaaagtcatgaccttagcgctgctcatgctcctagttgatactcttcc |
23430538 |
T |
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| Q |
394 |
cactacggtgctttctgaagaggttgagactcttcccgccacttactctcctacccatattcacatgacattgccttccac |
474 |
Q |
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| T |
23430539 |
taccatggcgctttctgaagaggttaagaatcttcccaccacttactctccaacccatgttcacctgacattgccttccac |
23430619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 278 - 474
Target Start/End: Original strand, 23438480 - 23438677
Alignment:
| Q |
278 |
cattagtctcatcaatttttcttctacaataaaacttatttttactttctcttgcatatcaaaa-tgtccaaagccatgaccttagtgttgctcgtcctc |
376 |
Q |
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||||| || |||| |||||||||| | |||||| |||||||||||||||||||||||| |||| |||| |||| |||| |||||| || ||| | ||| |
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| T |
23438480 |
cattactcacatccatttttcttcaataataaagcttatttttactttctcttgcataagaaaaatgtcaaaagtcatggccttagcattactcatgctc |
23438579 |
T |
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| Q |
377 |
ctagttttgtctcttttcactacggtgctttctgaagaggttgagactcttcccgccacttactctcctacccatattcacatgacattgccttccac |
474 |
Q |
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| T |
23438580 |
ctagttgagacaattcccactacggtgctttctaaagaggttgagactcttcccacgacttactcttctacccatcttcacctgacattgccttccac |
23438677 |
T |
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