View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16629_high_20 (Length: 432)
Name: NF16629_high_20
Description: NF16629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16629_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 262 - 414
Target Start/End: Original strand, 8269329 - 8269481
Alignment:
| Q |
262 |
aaatctccttgctagagaatctacttccatcatgattaaatcatttaaacctatttttcaccatcttttctatattagctccaactctaatgttgataat |
361 |
Q |
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| T |
8269329 |
aaatctccttgctagagaatctacttccatcatgattagatcagttaagcttatttttcaccatcttttctatattagctccaactctaatgttgataat |
8269428 |
T |
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| Q |
362 |
gctaaataaaatctcagtacataaatcattaactagtagtattactatattaa |
414 |
Q |
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| T |
8269429 |
gctaaataaaatctcagtacataaattattaactagtagtattacaatattaa |
8269481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 7 - 150
Target Start/End: Original strand, 8269074 - 8269217
Alignment:
| Q |
7 |
gtgatatgaaagttttaggggtgatctttacaaagatattccatactataaagtataaactagacgaccacaataaaaatcaaatcttgttttgttaagt |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
8269074 |
gtgatatgaaagttttaggggtgatctttacaaagatattccatactataaagtataaactagacgaccacaataaaaatcaaatcttgttttgctaagt |
8269173 |
T |
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| Q |
107 |
gtgttggttatatgaattaaatttcatcgcaatattctttgata |
150 |
Q |
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| T |
8269174 |
gtgttggttacataaattaaatttcatcgtaatattctttgata |
8269217 |
T |
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