View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16629_high_21 (Length: 425)
Name: NF16629_high_21
Description: NF16629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16629_high_21 |
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Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 28946806 - 28947096
Alignment:
| Q |
1 |
ttcggaggaacaggttcgttgtccaaaacggtgccgttagaggaatcgagatctgtgagaatccaattaccggaatcgaaatggatagtgaggtgtttgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28946806 |
ttcggaggaacaggttcgttgtccaaaacggtgccgttagaggaatcgagatctgtgagaatccaattaccggaatcgaaatggatagtgaggtgtttgg |
28946905 |
T |
|
| Q |
101 |
tggaaatacctggatctttgatgaggaggttgttgccgcggatgacacgaccgattttgacggtggatccaggttcgaattggtgggtttctccgttgcg |
200 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28946906 |
tggaaatacctggatctttgatggggaggttgttgccgcggatgacacgaccgattttgacggtggatccaggttcgaattggtgggtttctccgttgcg |
28947005 |
T |
|
| Q |
201 |
tggaccggcgaggatttggagtgtgagagtgggtgggtcttgttgttcttccattttagtgagagagtgagtttggaaggggaggattgag |
291 |
Q |
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| T |
28947006 |
tggaccggcgaggatttggagtgtgagagtgggtgggtcttgttgttcttccattttagtgagagagtgagtttggaaggggaggattgag |
28947096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 268 - 321
Target Start/End: Original strand, 28947101 - 28947154
Alignment:
| Q |
268 |
tgagtttggaaggggaggattgagctattgtcattttacaaaagagttattcaa |
321 |
Q |
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| T |
28947101 |
tgagtttggaaggggaggattgagctattgtcattttacaaaagagttattcaa |
28947154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 4 - 291
Target Start/End: Original strand, 34824172 - 34824463
Alignment:
| Q |
4 |
ggaggaacaggttcgttgtccaaaacggtgccgttagaggaatcgagatctgtgagaatccaattaccggaatcgaaatggatagtgaggtgtttggtgg |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34824172 |
ggaggaacaggttcgttgtccaaaacggtgccgttagaggaatcgagatctgtgagaatccaattaccggaatcgaaatggatagtgaggtgtttggtgg |
34824271 |
T |
|
| Q |
104 |
aaatacctggatctttgatgaggaggttgttgccgcggatgacacgaccgattttgacggtggatccaggttcgaattggtgggtttctccgttgcgtgg |
203 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34824272 |
aaatacctggatctttgatggggaggttgttgccgcggatgacacgaccgattttgacggtggatccaggttcgaattggtgggtttctccgttgcgtgg |
34824371 |
T |
|
| Q |
204 |
accggcgaggatttggagtgtgagagtgggtgggtcttgttgttcttccattttagtgaga----gagtgagtttggaaggggaggattgag |
291 |
Q |
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||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
34824372 |
accggcgaggatttggagtgtaagagtgggtgagtcttgttgttcttccattttagtgagagagtgagtgagtttggaaggggaggattgag |
34824463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 138; Significance: 5e-72; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 4 - 200
Target Start/End: Complemental strand, 42231955 - 42231756
Alignment:
| Q |
4 |
ggaggaacaggttcgttgtccaaaacggtgccgttagaggaatcgagatctgtgagaatccaattaccgga---atcgaaatggatagtgaggtgtttgg |
100 |
Q |
| |
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|||||||| |||| ||| || |||||||||||||| ||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||| |
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| T |
42231955 |
ggaggaacgggtttgttatctaaaacggtgccgtttgaggaatcgagatatgtgagaatccaattacaggacgaatcgaaatggatagtgaggtgtttgg |
42231856 |
T |
|
| Q |
101 |
tggaaatacctggatctttgatgaggaggttgttgccgcggatgacacgaccgattttgacggtggatccaggttcgaattggtgggtttctccgttgcg |
200 |
Q |
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||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||| |
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| T |
42231855 |
tggaaatacctggatctttgatggggaggttgttgccgcgtatgacccgaccgattttgatggtggatccaggttcgaattggtgggtttcgccgttgcg |
42231756 |
T |
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