View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16629_high_26 (Length: 398)

Name: NF16629_high_26
Description: NF16629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16629_high_26
NF16629_high_26
[»] chr1 (7 HSPs)
chr1 (20-391)||(47640541-47640912)
chr1 (219-298)||(6525296-6525375)
chr1 (217-340)||(6497783-6497906)
chr1 (217-328)||(47287582-47287693)
chr1 (217-297)||(6510737-6510817)
chr1 (219-297)||(47593063-47593141)
chr1 (257-297)||(6515167-6515207)
[»] scaffold0341 (1 HSPs)
scaffold0341 (217-297)||(12417-12497)
[»] scaffold0007 (1 HSPs)
scaffold0007 (225-297)||(7162-7234)
[»] chr6 (6 HSPs)
chr6 (225-297)||(18991047-18991119)
chr6 (225-297)||(21968265-21968337)
chr6 (225-297)||(22086149-22086221)
chr6 (225-297)||(22206841-22206913)
chr6 (225-338)||(18995770-18995883)
chr6 (225-297)||(18979695-18979767)
[»] chr5 (1 HSPs)
chr5 (217-298)||(28854669-28854750)
[»] chr8 (1 HSPs)
chr8 (225-297)||(10401678-10401750)
[»] chr4 (1 HSPs)
chr4 (216-304)||(36290560-36290648)


Alignment Details
Target: chr1 (Bit Score: 364; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 20 - 391
Target Start/End: Complemental strand, 47640912 - 47640541
Alignment:
Q  20 cattgtgatccaacatattcaagaaagaatgttaacattttcacaaagaacatgtttccttttcacacataatttgactggctagtaagttataatgtaa 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47640912 cattgtgatccaacatattcaagaaagaatgttaacattttcacaaaaaacatgtttccttttcacacataatttgactggctagtaagttataatgtaa 47640813  T
Q  120 gcatatatgctagaggggatgacaaaaaggcatgaaacttactaagtccctactatccttcctgtatttacttgagtctgatctggctggaaaatttttg 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47640812 gcatatatgctagaggggatgacaaaaaggcatgaaacttactaagtccctactatccttcctgtatttacttgagtctgatctggctggaaaatttttg 47640713  T
Q  220 ccatcccaaaatctgaaatctttgggttcatattttcatctaatagaacattgctggctttgagatcacgatgaataattctaagttgggagtcttcgtg 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47640712 ccatcccaaaatctgaaatctttgggttcatattttcatctaatagaacattgctggctttgagatcacgatgaataattctaagttgggagtcttcgtg 47640613  T
Q  320 tagataaagaatccctcgagcgatgccaactataatcttatagcgactagaccaatctaactccctttgctt 391  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  47640612 tagataaagaatccctcgagcgatgccaactataatcttatggcgactagaccaatctaactccctttgctt 47640541  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 219 - 298
Target Start/End: Complemental strand, 6525375 - 6525296
Alignment:
Q  219 gccatcccaaaatctgaaatctttgggttcatattttcatctaatagaacattgctggctttgagatcacgatgaataat 298  Q
    ||||| ||||||||||  ||||| || ||||| | ||||||||| |||| |||||| |||||||||||||||||||||||    
T  6525375 gccatgccaaaatctgctatcttaggattcatctcttcatctaagagaatattgcttgctttgagatcacgatgaataat 6525296  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 217 - 340
Target Start/End: Original strand, 6497783 - 6497906
Alignment:
Q  217 ttgccatcccaaaatctgaaatctttgggttcatattttcatctaatagaacattgctggctttgagatcacgatgaataattctaagttgggagtcttc 316  Q
    ||||||| |||||||| || ||||| || ||||| | ||||||||| ||||  || || ||||||||||||||||||||||| |  ||| | || || ||    
T  6497783 ttgccatgccaaaatcagatatcttaggattcatttcttcatctaagagaatgttacttgctttgagatcacgatgaataatgcgcagtcgagaatcctc 6497882  T
Q  317 gtgtagataaagaatccctcgagc 340  Q
    ||| || |||||||| ||||||||    
T  6497883 gtgaaggtaaagaatgcctcgagc 6497906  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 217 - 328
Target Start/End: Complemental strand, 47287693 - 47287582
Alignment:
Q  217 ttgccatcccaaaatctgaaatctttgggttcatattttcatctaatagaacattgctggctttgagatcacgatgaataattctaagttgggagtcttc 316  Q
    |||||||||||||||||||||| || || || | ||| ||||||||||  | ||| || ||||| ||||| ||||| || ||||||||| | || |||||    
T  47287693 ttgccatcccaaaatctgaaattttgggatttaaattctcatctaataatatattactagctttaagatcgcgatgtatgattctaagtcgagaatcttc 47287594  T
Q  317 gtgtagataaag 328  Q
    ||| ||||||||    
T  47287593 gtgaagataaag 47287582  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 297
Target Start/End: Original strand, 6510737 - 6510817
Alignment:
Q  217 ttgccatcccaaaatctgaaatctttgggttcatattttcatctaatagaacattgctggctttgagatcacgatgaataa 297  Q
    ||||||| |||||||| |  ||||| || ||||| | |||||| || |||| |||||| ||||||||||||||||||||||    
T  6510737 ttgccatgccaaaatcagctatcttaggattcatctcttcatccaagagaatattgcttgctttgagatcacgatgaataa 6510817  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 297
Target Start/End: Complemental strand, 47593141 - 47593063
Alignment:
Q  219 gccatcccaaaatctgaaatctttgggttcatattttcatctaatagaacattgctggctttgagatcacgatgaataa 297  Q
    ||||| ||||||||||| || || || |||||||||||||| | ||||||||| || | ||||||||| ||||| ||||    
T  47593141 gccattccaaaatctgatattttaggattcatattttcatccagtagaacattactaggtttgagatcccgatgtataa 47593063  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 297
Target Start/End: Original strand, 6515167 - 6515207
Alignment:
Q  257 atctaatagaacattgctggctttgagatcacgatgaataa 297  Q
    |||||| |||| |||||| ||||||||||||||||||||||    
T  6515167 atctaagagaatattgcttgctttgagatcacgatgaataa 6515207  T

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Target: scaffold0341 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 297
Target Start/End: Original strand, 12417 - 12497
Alignment:
Q  217 ttgccatcccaaaatctgaaatctttgggttcatattttcatctaatagaacattgctggctttgagatcacgatgaataa 297  Q
    ||||||| |||||||| |  ||||| || ||||| | |||||| || |||| |||||| ||||||||||||||||||||||    
T  12417 ttgccatgccaaaatcagctatcttaggattcatctcttcatccaagagaatattgcttgctttgagatcacgatgaataa 12497  T

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Target: scaffold0007 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 297
Target Start/End: Complemental strand, 7234 - 7162
Alignment:
Q  225 ccaaaatctgaaatctttgggttcatattttcatctaatagaacattgctggctttgagatcacgatgaataa 297  Q
    |||||||||||||| || ||  |||||||||| |||||||||| |||||| | ||||||||| ||||| ||||    
T  7234 ccaaaatctgaaattttaggaatcatattttcgtctaatagaatattgctaggtttgagatcccgatgtataa 7162  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 297
Target Start/End: Original strand, 18991047 - 18991119
Alignment:
Q  225 ccaaaatctgaaatctttgggttcatattttcatctaatagaacattgctggctttgagatcacgatgaataa 297  Q
    |||||||||||||| || ||  |||||||||| |||||||||| |||||| | ||||||||| ||||| ||||    
T  18991047 ccaaaatctgaaattttaggaatcatattttcgtctaatagaatattgctaggtttgagatcccgatgtataa 18991119  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 297
Target Start/End: Original strand, 21968265 - 21968337
Alignment:
Q  225 ccaaaatctgaaatctttgggttcatattttcatctaatagaacattgctggctttgagatcacgatgaataa 297  Q
    |||||||||||||| || ||  ||||||||||||||||||||| ||| || | ||||||||| ||||| ||||    
T  21968265 ccaaaatctgaaattttaggaatcatattttcatctaatagaatattactaggtttgagatcgcgatgtataa 21968337  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 297
Target Start/End: Original strand, 22086149 - 22086221
Alignment:
Q  225 ccaaaatctgaaatctttgggttcatattttcatctaatagaacattgctggctttgagatcacgatgaataa 297  Q
    ||||||||||||||  | ||  ||||||||||||||||||||| ||| || | ||||||||||||||| ||||    
T  22086149 ccaaaatctgaaattctaggaatcatattttcatctaatagaatattacttggtttgagatcacgatgtataa 22086221  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 297
Target Start/End: Complemental strand, 22206913 - 22206841
Alignment:
Q  225 ccaaaatctgaaatctttgggttcatattttcatctaatagaacattgctggctttgagatcacgatgaataa 297  Q
    |||||||| ||||| || ||  ||||||||||||||||||||| |||||| | ||||||||| ||||| ||||    
T  22206913 ccaaaatcagaaattttaggaatcatattttcatctaatagaatattgctaggtttgagatcccgatgtataa 22206841  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 338
Target Start/End: Original strand, 18995770 - 18995883
Alignment:
Q  225 ccaaaatctgaaatctttgggttcatattttcatctaatagaacattgctggctttgagatcacgatgaataattctaagttgggagtcttcgtgtagat 324  Q
    |||||||||||||| || ||  |||||||||| | |||||||| |||||| | ||||||||| ||||| |||| | | ||| | || | ||| || | ||    
T  18995770 ccaaaatctgaaattttaggaatcatattttcgtataatagaatattgctaggtttgagatcccgatgtataacttttagtcgagaatgttcatgcaaat 18995869  T
Q  325 aaagaatccctcga 338  Q
    ||||||||||||||    
T  18995870 aaagaatccctcga 18995883  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 297
Target Start/End: Original strand, 18979695 - 18979767
Alignment:
Q  225 ccaaaatctgaaatctttgggttcatattttcatctaatagaacattgctggctttgagatcacgatgaataa 297  Q
    |||||||||||||| || ||  |||||||||| |||||||||| |||||| | ||||| ||| ||||| ||||    
T  18979695 ccaaaatctgaaattttaggaatcatattttcgtctaatagaatattgctaggtttgacatcccgatgtataa 18979767  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 298
Target Start/End: Original strand, 28854669 - 28854750
Alignment:
Q  217 ttgccatcccaaaatctgaaatctttgggttcatattttcatctaatagaacattgctggctttgagatcacgatgaataat 298  Q
    ||||||| || |||||||| ||||| |  ||||| ||||||||||| |||| |||||  |||||||||||||| || |||||    
T  28854669 ttgccatgccgaaatctgatatcttagcattcatgttttcatctaagagaatattgcctgctttgagatcacggtgtataat 28854750  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 297
Target Start/End: Original strand, 10401678 - 10401750
Alignment:
Q  225 ccaaaatctgaaatctttgggttcatattttcatctaatagaacattgctggctttgagatcacgatgaataa 297  Q
    ||||||||||| || |||||  |||||||||||||||||| || ||| || | |||||| ||||| |||||||    
T  10401678 ccaaaatctgatatttttggaatcatattttcatctaataaaatattactaggtttgaggtcacggtgaataa 10401750  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 304
Target Start/End: Complemental strand, 36290648 - 36290560
Alignment:
Q  216 tttgccatcccaaaatctgaaatctttgggttcatattttcatctaatagaacattgctggctttgagatcacgatgaataattctaag 304  Q
    |||||||  ||||| |||||||| ||||| |||||||||||||| || | ||  ||||| ||||| ||||| ||||| || ||||||||    
T  36290648 tttgccaagccaaagtctgaaatttttggattcatattttcatccaacaaaatgttgcttgcttttagatctcgatggattattctaag 36290560  T

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