View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16629_high_27 (Length: 391)

Name: NF16629_high_27
Description: NF16629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16629_high_27
NF16629_high_27
[»] chr2 (20 HSPs)
chr2 (241-386)||(11147699-11147845)
chr2 (73-221)||(12676438-12676585)
chr2 (69-199)||(8940034-8940163)
chr2 (67-217)||(19206397-19206547)
chr2 (67-221)||(15301482-15301635)
chr2 (106-204)||(31967442-31967540)
chr2 (169-217)||(29926885-29926933)
chr2 (80-127)||(1517689-1517736)
chr2 (78-197)||(6788301-6788420)
chr2 (61-208)||(21603481-21603628)
chr2 (91-138)||(28684190-28684237)
chr2 (80-166)||(2687058-2687144)
chr2 (67-149)||(13242544-13242626)
chr2 (171-217)||(13478769-13478815)
chr2 (130-159)||(11147894-11147923)
chr2 (88-149)||(15816904-15816965)
chr2 (168-217)||(20966212-20966261)
chr2 (192-235)||(1517582-1517626)
chr2 (106-210)||(7165632-7165736)
chr2 (82-210)||(33260980-33261107)
[»] chr4 (28 HSPs)
chr4 (99-217)||(8170888-8171006)
chr4 (71-241)||(971881-972050)
chr4 (61-217)||(48973292-48973448)
chr4 (61-197)||(4161776-4161908)
chr4 (99-210)||(3534150-3534261)
chr4 (135-210)||(37197547-37197622)
chr4 (101-235)||(39331095-39331229)
chr4 (106-217)||(13834388-13834499)
chr4 (99-217)||(51234390-51234508)
chr4 (67-184)||(40836725-40836842)
chr4 (117-217)||(8755909-8756009)
chr4 (106-190)||(47097417-47097501)
chr4 (106-209)||(312695-312798)
chr4 (106-209)||(6552521-6552624)
chr4 (106-209)||(6552921-6553024)
chr4 (103-218)||(24806661-24806775)
chr4 (67-221)||(11839825-11839979)
chr4 (67-217)||(29116280-29116430)
chr4 (156-236)||(35896069-35896150)
chr4 (67-184)||(50384509-50384625)
chr4 (146-218)||(7912538-7912610)
chr4 (101-217)||(52700920-52701036)
chr4 (106-217)||(51150901-51151012)
chr4 (167-217)||(8170760-8170810)
chr4 (99-217)||(27395479-27395597)
chr4 (106-184)||(45615718-45615796)
chr4 (190-241)||(12922202-12922254)
chr4 (117-217)||(32934085-32934185)
[»] chr3 (21 HSPs)
chr3 (61-221)||(34979065-34979225)
chr3 (73-237)||(45681162-45681327)
chr3 (89-235)||(46008567-46008714)
chr3 (78-236)||(23195628-23195787)
chr3 (71-236)||(1183116-1183282)
chr3 (67-221)||(14984463-14984617)
chr3 (88-217)||(20948225-20948351)
chr3 (117-217)||(21568362-21568462)
chr3 (67-153)||(26499845-26499931)
chr3 (88-162)||(30843655-30843729)
chr3 (69-197)||(43908681-43908809)
chr3 (99-217)||(14194850-14194968)
chr3 (69-217)||(39336680-39336828)
chr3 (118-236)||(12832219-12832338)
chr3 (135-218)||(47199924-47200007)
chr3 (176-221)||(47944340-47944385)
chr3 (73-153)||(3941670-3941750)
chr3 (146-174)||(36080626-36080654)
chr3 (78-126)||(39530585-39530633)
chr3 (169-217)||(43838820-43838868)
chr3 (170-218)||(47944547-47944595)
[»] chr7 (14 HSPs)
chr7 (61-221)||(10228757-10228921)
chr7 (67-221)||(32996294-32996447)
chr7 (67-221)||(5362301-5362455)
chr7 (117-217)||(24325399-24325502)
chr7 (117-217)||(38838526-38838626)
chr7 (71-217)||(3116858-3117002)
chr7 (67-152)||(26905114-26905199)
chr7 (72-217)||(27376284-27376428)
chr7 (71-167)||(49078117-49078213)
chr7 (146-210)||(26910102-26910168)
chr7 (80-219)||(40354978-40355117)
chr7 (88-197)||(41870534-41870644)
chr7 (78-114)||(10476767-10476803)
chr7 (157-236)||(23441494-23441574)
[»] scaffold0687 (1 HSPs)
scaffold0687 (71-236)||(1618-1784)
[»] chr8 (17 HSPs)
chr8 (71-236)||(7603934-7604100)
chr8 (72-221)||(33508582-33508731)
chr8 (105-217)||(21600463-21600575)
chr8 (71-210)||(42659871-42660010)
chr8 (67-217)||(2986941-2987090)
chr8 (67-221)||(21602068-21602225)
chr8 (91-218)||(41616701-41616828)
chr8 (117-236)||(21215939-21216055)
chr8 (61-120)||(44362512-44362571)
chr8 (82-184)||(21145463-21145565)
chr8 (117-221)||(6393839-6393943)
chr8 (135-244)||(42844865-42844975)
chr8 (156-217)||(7680994-7681055)
chr8 (106-209)||(36754636-36754739)
chr8 (103-217)||(13002958-13003072)
chr8 (103-199)||(34949105-34949201)
chr8 (67-127)||(37215397-37215457)
[»] chr6 (16 HSPs)
chr6 (67-217)||(33550979-33551130)
chr6 (61-236)||(10067609-10067786)
chr6 (67-217)||(21020992-21021138)
chr6 (67-220)||(10219595-10219743)
chr6 (99-218)||(9307391-9307509)
chr6 (67-162)||(28747928-28748028)
chr6 (69-180)||(16431554-16431665)
chr6 (61-140)||(23887629-23887708)
chr6 (67-125)||(27789081-27789139)
chr6 (106-198)||(17848762-17848854)
chr6 (66-218)||(28995429-28995581)
chr6 (66-149)||(515855-515938)
chr6 (135-210)||(7515596-7515671)
chr6 (106-209)||(21237273-21237376)
chr6 (135-197)||(7954811-7954873)
chr6 (136-217)||(4964252-4964333)
[»] chr5 (15 HSPs)
chr5 (69-222)||(12403194-12403347)
chr5 (67-167)||(26675115-26675214)
chr5 (67-167)||(26946723-26946822)
chr5 (117-217)||(23159090-23159190)
chr5 (71-210)||(27001184-27001323)
chr5 (96-221)||(917082-917207)
chr5 (67-217)||(6217537-6217688)
chr5 (103-182)||(7313980-7314059)
chr5 (65-140)||(14460045-14460120)
chr5 (119-181)||(1041858-1041920)
chr5 (117-201)||(4658392-4658476)
chr5 (96-200)||(37181239-37181343)
chr5 (137-210)||(22579319-22579392)
chr5 (73-125)||(37268979-37269031)
chr5 (134-210)||(39194868-39194944)
[»] chr1 (17 HSPs)
chr1 (69-241)||(33747305-33747478)
chr1 (65-162)||(34826955-34827052)
chr1 (67-163)||(6541119-6541215)
chr1 (71-217)||(32743229-32743375)
chr1 (65-210)||(26515139-26515283)
chr1 (61-217)||(51273330-51273486)
chr1 (106-209)||(49880163-49880266)
chr1 (78-184)||(8984017-8984123)
chr1 (147-236)||(35684864-35684954)
chr1 (152-236)||(34177465-34177550)
chr1 (146-199)||(50155749-50155802)
chr1 (91-163)||(5043414-5043486)
chr1 (82-140)||(35621466-35621524)
chr1 (94-159)||(33747839-33747904)
chr1 (117-209)||(9890589-9890681)
chr1 (71-127)||(27900784-27900840)
chr1 (88-184)||(36144966-36145062)
[»] scaffold0211 (1 HSPs)
scaffold0211 (106-209)||(20053-20156)
[»] scaffold0284 (1 HSPs)
scaffold0284 (106-198)||(2447-2539)
[»] scaffold0003 (1 HSPs)
scaffold0003 (72-236)||(328806-328972)
[»] scaffold0002 (1 HSPs)
scaffold0002 (71-184)||(349095-349208)
[»] scaffold0114 (1 HSPs)
scaffold0114 (110-209)||(35029-35128)


Alignment Details
Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 241 - 386
Target Start/End: Complemental strand, 11147845 - 11147699
Alignment:
Q  241 ccaaacgtatacatttttaataatttaattgaacgtttgtnnnnnnnnnnnnnttaatcttgttaagcatttctttttcttctttcttgatttgatcatt 340  Q
    ||||||||||||||||||||||||||||| ||||||||||             |||||||||||||||||||  |||||||| || ||||||||||||||    
T  11147845 ccaaacgtatacatttttaataatttaatcgaacgtttgtaaaaagaaaataattaatcttgttaagcattttcttttcttcgttgttgatttgatcatt 11147746  T
Q  341 aatctataataagca-ttctccctcattctcatccctctctgctcct 386  Q
    ||||||||||||||| |||||||||||||||||||||| ||| ||||    
T  11147745 aatctataataagcatttctccctcattctcatccctccctggtcct 11147699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 73 - 221
Target Start/End: Complemental strand, 12676585 - 12676438
Alignment:
Q  73 atgataataagtaaatacttataaaaactgatatgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacattttaatattagagac 172  Q
    |||||| |||||||||| ||||||| ||||||||||||||| | ||||||||| | |||| ||||||| ||| ||||| |||||||||||  | ||| |     
T  12676585 atgatagtaagtaaata-ttataaatactgatatgacaatagataagtatattgagggactaatatgacaatattaataaaacattttaacgtcagaaat 12676487  T
Q  173 taatttgactaatgaaatgcacaatcaaagactattttcaaatttcgat 221  Q
    || |||||||||  || |||||||||| |||||||||| | ||||||||    
T  12676486 tattttgactaactaagtgcacaatcatagactattttaacatttcgat 12676438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 69 - 199
Target Start/End: Original strand, 8940034 - 8940163
Alignment:
Q  69 tgaaatgataataagtaaatacttataaaaactgatatgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacattttaatattag 168  Q
    ||||||||||| ||||||||  |||||||||||  |||||||| ||  | ||||||| || ||| ||||||| ||| ||||| ||| |||||||||| ||    
T  8940034 tgaaatgataacaagtaaatgtttataaaaacttgtatgacaacaagtatgtatattgaatgactaatatgacaatattaattaaatattttaatatcag 8940133  T
Q  169 agactaatttgactaatgaaatgcacaatca 199  Q
    | | || |||||||||||| |||||||||||    
T  8940134 a-attattttgactaatgatatgcacaatca 8940163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 67 - 217
Target Start/End: Original strand, 19206397 - 19206547
Alignment:
Q  67 actgaaatgataataagtaaatacttataaaaactgatatgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacattttaatatt 166  Q
    |||||||||| |||| |||| ||||||||| ||||| |||||||||||  || |||||| |||||| |||| || ||| ||||| | |||| |||| ||     
T  19206397 actgaaatgacaatatgtaagtacttataagaactgctatgacaataagtaaatatattgaaggactaataagacaatattaataatacatcttaacatc 19206496  T
Q  167 agagactaatttgactaatgaaatgcacaatcaaagactattttcaaattt 217  Q
    ||||| || |||||||||  || |||| ||||| | |||||||| ||||||    
T  19206497 agagaatattttgactaacaaagtgcataatcagaaactattttaaaattt 19206547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 67 - 221
Target Start/End: Original strand, 15301482 - 15301635
Alignment:
Q  67 actgaaatgataataagtaaatacttataaaaactgatatgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacattttaatatt 166  Q
    ||||||||||| |||||| | ||| |||||  ||| |||||| |||||  ||||||||| ||| || |||| || ||| |||| |||  |||||||| |     
T  15301482 actgaaatgatgataagtgagtacatataaggactcatatgataataagtaagtatattgaagtactaataagacaatattaacgaagtattttaatgtc 15301581  T
Q  167 agagactaatttgactaatgaaatgcacaatcaaagactattttcaaatttcgat 221  Q
    |||||||| ||||||| |  ||||||||||||| ||| |||||| ||||||||||    
T  15301582 agagactattttgact-agaaaatgcacaatcagagattattttgaaatttcgat 15301635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 204
Target Start/End: Complemental strand, 31967540 - 31967442
Alignment:
Q  106 tgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacattttaatattagagactaatttgactaatgaaatgcacaatcaaagac 204  Q
    ||||| |||| ||||||||| |||||| ||||||| ||| | ||||||  |||| ||| |||| ||||| ||||||||||||| || ||||||| ||||    
T  31967540 tgacagtaaaaaagtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttagggactattttgactaatgaagtgtacaatcagagac 31967442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 29926885 - 29926933
Alignment:
Q  169 agactaatttgactaatgaaatgcacaatcaaagactattttcaaattt 217  Q
    |||||| ||||||||||||||||||||||||  ||||||||| ||||||    
T  29926885 agactattttgactaatgaaatgcacaatcattgactattttaaaattt 29926933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 80 - 127
Target Start/End: Complemental strand, 1517736 - 1517689
Alignment:
Q  80 taagtaaatacttataaaaactgatatgacaataaacaagtatattaa 127  Q
    ||||||| ||||||||| |||||||||||||||||| | |||||||||    
T  1517736 taagtaagtacttataataactgatatgacaataaataggtatattaa 1517689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 78 - 197
Target Start/End: Complemental strand, 6788420 - 6788301
Alignment:
Q  78 aataagtaaatacttataaaaactgatatgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacattttaatattagagactaatt 177  Q
    |||||||||||||||||||  |||| ||||| |||||  ||||||||| || ||| | ||||| ||| ||||  ||  |||||||| | |  || || ||    
T  6788420 aataagtaaatacttataaggactgctatgataataagtaagtatattgaatgactagtatgacaatattaacaaattattttaatgtcattgattattt 6788321  T
Q  178 tgactaatgaaatgcacaat 197  Q
    ||||||||||||||||||||    
T  6788320 tgactaatgaaatgcacaat 6788301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 61 - 208
Target Start/End: Complemental strand, 21603628 - 21603481
Alignment:
Q  61 ataagaactgaaatgataataagtaaatacttataaaaactgatatgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacatttt 160  Q
    ||||| ||| |||||| ||||||||| ||  |||||  ||  ||||||||||||  |||| |||| ||| || || |||| ||| |||| |||| |||||    
T  21603628 ataaggactaaaatgacaataagtaagtatgtataaggaccaatatgacaataactaagtctattgaagaactaacatgacaatattaacgaaatatttt 21603529  T
Q  161 aatattagagactaatttgactaatgaaatgcacaatcaaagactatt 208  Q
    ||||| | |||||| |||||||||  || ||||||| ||| |||||||    
T  21603528 aatatcaaagactattttgactaacaaagtgcacaaccaaggactatt 21603481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 91 - 138
Target Start/End: Original strand, 28684190 - 28684237
Alignment:
Q  91 ttataaaaactgatatgacaataaacaagtatattaaaggacaaatat 138  Q
    |||||||||||||||| |||||||| ||||||||| |||||| |||||    
T  28684190 ttataaaaactgatataacaataaataagtatattgaaggactaatat 28684237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 166
Target Start/End: Original strand, 2687058 - 2687144
Alignment:
Q  80 taagtaaatacttataaaaactgatatgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacattttaatatt 166  Q
    ||||||| |||||||||| | |||| |||||||||  | || |||| ||| ||||||| || ||| |||| ||||||||||||||||    
T  2687058 taagtaagtacttataaagattgatgtgacaataagaatgtgtattcaagaacaaataagacaatattaacgaaacattttaatatt 2687144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 149
Target Start/End: Complemental strand, 13242626 - 13242544
Alignment:
Q  67 actgaaatgataataagtaaatacttataaaaactgatatgacaataaacaagtatattaaaggacaaatatgataatgttaa 149  Q
    |||||||||| ||||| ||| |||||||||  | ||||||||||||||  ||  |||||||||||| ||||||| ||| ||||    
T  13242626 actgaaatgacaataaataagtacttataaggattgatatgacaataagtaaccatattaaaggactaatatgacaatattaa 13242544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 217
Target Start/End: Original strand, 13478769 - 13478815
Alignment:
Q  171 actaatttgactaatgaaatgcacaatcaaagactattttcaaattt 217  Q
    |||| |||||||||| ||||||||||||||| |||||||| ||||||    
T  13478769 actattttgactaataaaatgcacaatcaaaaactattttaaaattt 13478815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 159
Target Start/End: Complemental strand, 11147923 - 11147894
Alignment:
Q  130 gacaaatatgataatgttaatgaaacattt 159  Q
    ||||||||||||||||||||||||||||||    
T  11147923 gacaaatatgataatgttaatgaaacattt 11147894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 149
Target Start/End: Complemental strand, 15816965 - 15816904
Alignment:
Q  88 tacttataaaaactgatatgacaataaacaagtatattaaaggacaaatatgataatgttaa 149  Q
    ||||||||||||||||||||| |||||  |||||| || |||||| ||||||| ||| ||||    
T  15816965 tacttataaaaactgatatgaaaataagtaagtatcttgaaggactaatatgacaatattaa 15816904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 217
Target Start/End: Original strand, 20966212 - 20966261
Alignment:
Q  168 gagactaatttgactaatgaaatgcacaatcaaagactattttcaaattt 217  Q
    ||||||| |||||||||  || ||||||||||||||||||||| ||||||    
T  20966212 gagactattttgactaacaaagtgcacaatcaaagactattttaaaattt 20966261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 235
Target Start/End: Complemental strand, 1517626 - 1517582
Alignment:
Q  192 cacaatcaaagactattttcaaatttcgat-cattgaaagactat 235  Q
    ||||||||||||||||||| |||||||||| ||||||| ||||||    
T  1517626 cacaatcaaagactattttaaaatttcgatacattgaaggactat 1517582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 210
Target Start/End: Complemental strand, 7165736 - 7165632
Alignment:
Q  106 tgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacattttaatattagagactaatttgactaatgaaatgcacaatcaaagact 205  Q
    |||||||||  ||||||||| || ||| ||||||| ||| ||||  ||  |||||||| |||  ||||| |||||||||| || |||||||||||  |||    
T  7165736 tgacaataagtaagtatattgaaagactaatatgaaaatattaacaaattattttaatgttaaggactattttgactaataaagtgcacaatcaagaact 7165637  T
Q  206 atttt 210  Q
    |||||    
T  7165636 atttt 7165632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 210
Target Start/End: Complemental strand, 33261107 - 33260980
Alignment:
Q  82 agtaaatacttataaaaactgatatgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacattttaatattagagactaatttgac 181  Q
    |||||||||||||||  ||||||||||| || || ||||||||| ||| |  ||||||| ||| | || |||| |||||| | | | |||||| ||||||    
T  33261107 agtaaatacttataaggactgatatgactatgaataagtatattgaagaaataatatgacaatatcaacgaaatattttactgtcaaagactattttgac 33261008  T
Q  182 taatgaaatgcacaatcaaagactatttt 210  Q
    ||| ||| ||  |||||||| ||||||||    
T  33261007 taacgaagtgttcaatcaaa-actatttt 33260980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 99 - 217
Target Start/End: Original strand, 8170888 - 8171006
Alignment:
Q  99 actgatatgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacattttaatattagagactaatttgactaatgaaatgcacaatc 198  Q
    ||||||||||||||||  ||||||||| ||| || ||||||| ||| |||||||||||||||||||||||||| || ||||||||| ||| |||| ||||    
T  8170888 actgatatgacaataagtaagtatattgaagtactaatatgacaatattaatgaaacattttaatattagagattattttgactaacgaattgcaaaatc 8170987  T
Q  199 aaagactattttcaaattt 217  Q
    | |||||||||| ||||||    
T  8170988 agagactattttgaaattt 8171006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 71 - 241
Target Start/End: Complemental strand, 972050 - 971881
Alignment:
Q  71 aaatgataataagtaaatacttataaaaactgatatgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacattttaatattagag 170  Q
    |||||| |||||||||||||||| ||  |||||||| |||||||  | ||||||| || ||  ||||||| ||| |||||||||||  ||||||| | ||    
T  972050 aaatgacaataagtaaatacttacaaggactgatattacaataagtatgtatattgaatgattaatatgacaatattaatgaaaca--ttaatatcatag 971953  T
Q  171 actaatttgactaatgaaatgcacaatcaaagactattttcaaatttcgat-cattgaaagactattttgac 241  Q
    |||| |||||||||  || ||||||||||||||||||||| |||||| ||| ||||||| ||||||| ||||    
T  971952 actactttgactaacaaagtgcacaatcaaagactattttgaaattttgatacattgaatgactattgtgac 971881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 61 - 217
Target Start/End: Original strand, 48973292 - 48973448
Alignment:
Q  61 ataagaactgaaatgataataagtaaatacttataaaaactgatatgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacatttt 160  Q
    ||||| ||| |||||  ||||||||| || ||||||  || |||||||||||||  ||||||||| |||||| ||||||| ||| |||||||| ||||||    
T  48973292 ataaggactaaaatgccaataagtaagtatttataaggaccgatatgacaataagtaagtatattgaaggactaatatgacaatattaatgaagcatttt 48973391  T
Q  161 aatattagagactaatttgactaatgaaatgcacaatcaaagactattttcaaattt 217  Q
    || || |   |||| ||||| ||||||| ||||||||||| ||||||||| ||||||    
T  48973392 aacatcaagaactattttgattaatgaattgcacaatcaaggactattttgaaattt 48973448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 61 - 197
Target Start/End: Original strand, 4161776 - 4161908
Alignment:
Q  61 ataagaactgaaatgataataagtaaatacttataaaaactgatatgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacatttt 160  Q
    ||||| |||||||||  ||||||||| |||||||||| |||||||| | |||||    ||||||| ||| || ||||||| ||| |||||||||||||||    
T  4161776 ataaggactgaaatgccaataagtaagtacttataaagactgatatcataataa----gtatattgaagaactaatatgacaatattaatgaaacatttt 4161871  T
Q  161 aatattagagactaatttgactaatgaaatgcacaat 197  Q
    ||||| | |||||| |||||||||  |||||||||||    
T  4161872 aatatcatagactattttgactaacaaaatgcacaat 4161908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 99 - 210
Target Start/End: Original strand, 3534150 - 3534261
Alignment:
Q  99 actgatatgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacattttaatattagagactaatttgactaatgaaatgcacaatc 198  Q
    |||||||||||||||   |||||||||||||||| ||||| | ||| ||||||||| ||||||| ||  || |||| ||||||||| ||| |||||||||    
T  3534150 actgatatgacaatatgtaagtatattaaaggactaatataaaaatattaatgaaatattttaacatctgaaactattttgactaacgaattgcacaatc 3534249  T
Q  199 aaagactatttt 210  Q
    || |||||||||    
T  3534250 aacgactatttt 3534261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 135 - 210
Target Start/End: Original strand, 37197547 - 37197622
Alignment:
Q  135 atatgataatgttaatgaaacattttaatattagagactaatttgactaatgaaatgcacaatcaaagactatttt 210  Q
    |||||| ||| ||||| |||||||||||||||| |||||| ||||||||| ||||||| ||||||| |||||||||    
T  37197547 atatgacaatattaatcaaacattttaatattaaagactattttgactaacgaaatgcccaatcaaggactatttt 37197622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 101 - 235
Target Start/End: Original strand, 39331095 - 39331229
Alignment:
Q  101 tgatatgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacattttaatattagagactaatttgactaatgaaatgcacaatcaa 200  Q
    ||||||||||||||| ||||||||| || |||  |||| | ||| |||||||| ||||||||||| |  |||| ||||||| || ||| |||||||||||    
T  39331095 tgatatgacaataaataagtatattgaaagactgatataacaatattaatgaagcattttaatatcatggact-atttgacaaacgaagtgcacaatcaa 39331193  T
Q  201 agactattttcaaatttcgat-cattgaaagactat 235  Q
    | |||||||| ||||||| || |||| |||||||||    
T  39331194 aaactattttaaaatttcaatacattaaaagactat 39331229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 106 - 217
Target Start/End: Complemental strand, 13834499 - 13834388
Alignment:
Q  106 tgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacattttaatattagagactaatttgactaatgaaatgcacaatcaaagact 205  Q
    |||||||||  ||||||||| |||||| ||||||| ||| ||||  ||  |||||||| ||| |||||| |||||||||  || ||||||||||| ||||    
T  13834499 tgacaataagtaagtatattgaaggactaatatgacaatattaacaaattattttaatgttaaagactattttgactaacaaagtgcacaatcaaggact 13834400  T
Q  206 attttcaaattt 217  Q
    ||||| ||||||    
T  13834399 attttaaaattt 13834388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 99 - 217
Target Start/End: Original strand, 51234390 - 51234508
Alignment:
Q  99 actgatatgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacattttaatattagagactaatttgactaatgaaatgcacaatc 198  Q
    ||||| ||||||||||  ||||||||| || |   ||||||| ||| ||||| ||||||||||| || |||||||| ||||||||| |||||||| | |     
T  51234390 actgaaatgacaataagtaagtatattgaaagtttaatatgacaatattaataaaacattttaacatcagagactattttgactaacgaaatgcatagtt 51234489  T
Q  199 aaagactattttcaaattt 217  Q
    | |||||||||| ||||||    
T  51234490 agagactattttaaaattt 51234508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 184
Target Start/End: Complemental strand, 40836842 - 40836725
Alignment:
Q  67 actgaaatgataataagtaaatacttataaaaactgatatgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacattttaatatt 166  Q
    |||||||||| ||||||||| || ||||||  |||||||||| |||||  |||| |||| || |||   ||||| ||| |||||||| |||||||||||     
T  40836842 actgaaatgacaataagtaagtatttataaggactgatatgataataagtaagtgtattgaaagactggtatgacaatattaatgaagcattttaatatc 40836743  T
Q  167 agagactaatttgactaa 184  Q
    | |||||| |||||||||    
T  40836742 acagactattttgactaa 40836725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 117 - 217
Target Start/End: Original strand, 8755909 - 8756009
Alignment:
Q  117 aagtatattaaaggacaaatatgataatgttaatgaaacattttaatattagagactaatttgactaatgaaatgcacaatcaaagactattttcaaatt 216  Q
    |||||||||||||||  ||||||| ||| |||| |||  |||||||| |||||||||| ||||| ||| ||| |||| |||||| || |||||| |||||    
T  8755909 aagtatattaaaggattaatatgacaatattaacgaagtattttaatgttagagactattttgattaacgaagtgcataatcaatgattattttaaaatt 8756008  T
Q  217 t 217  Q
    |    
T  8756009 t 8756009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 106 - 190
Target Start/End: Original strand, 47097417 - 47097501
Alignment:
Q  106 tgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacattttaatattagagactaatttgactaatgaaat 190  Q
    |||||||||| |||||||||||||||| ||||||| ||| ||||| ||  |||||| | ||| |||||| ||||||||| |||||    
T  47097417 tgacaataaataagtatattaaaggactaatatgacaatattaataaagtattttagtgttaaagactattttgactaacgaaat 47097501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 106 - 209
Target Start/End: Original strand, 312695 - 312798
Alignment:
Q  106 tgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacattttaatattagagactaatttgactaatgaaatgcacaatcaaagact 205  Q
    |||||||||| ||||||||| |||||| ||||||| ||| | ||||||  |||| ||| |||| ||||| ||||||||||||| ||  |||||| ||||     
T  312695 tgacaataaataagtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttagggactattttgactaatgaagtgtgcaatcagagaca 312794  T
Q  206 attt 209  Q
    ||||    
T  312795 attt 312798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 106 - 209
Target Start/End: Original strand, 6552521 - 6552624
Alignment:
Q  106 tgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacattttaatattagagactaatttgactaatgaaatgcacaatcaaagact 205  Q
    |||||||||| ||||||||| |||||| ||| ||| ||| | ||||||  |||| ||| |||| ||||| ||||||||||||| || ||||||| ||||     
T  6552521 tgacaataaataagtatattgaaggactaatgtgacaatatcaatgaagtatttgaatgttagggactattttgactaatgaagtgtacaatcagagaca 6552620  T
Q  206 attt 209  Q
    ||||    
T  6552621 attt 6552624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 106 - 209
Target Start/End: Original strand, 6552921 - 6553024
Alignment:
Q  106 tgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacattttaatattagagactaatttgactaatgaaatgcacaatcaaagact 205  Q
    |||||||||| ||||||||| |||||| |||  || ||| | ||||||  |||| ||| |||||||||| ||||||||||||| || ||||||| ||||     
T  6552921 tgacaataaataagtatattgaaggactaatgagacaatatcaatgaagtatttgaatgttagagactattttgactaatgaagtgtacaatcagagaca 6553020  T
Q  206 attt 209  Q
    ||||    
T  6553021 attt 6553024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 103 - 218
Target Start/End: Original strand, 24806661 - 24806775
Alignment:
Q  103 atatgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacattttaatattagagactaatttgactaatgaaatgcacaatcaaag 202  Q
    ||||||||||||  ||||||||| ||  || | ||||| ||| ||||  ||  |||||||| |||||||||| ||||||||||||||| || ||| || |    
T  24806661 atatgacaataagtaagtatattgaaaaactactatgacaatattaacaaattattttaatgttagagactattttgactaatgaaatacataat-aagg 24806759  T
Q  203 actattttcaaatttc 218  Q
    ||||||||||||||||    
T  24806760 actattttcaaatttc 24806775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 221
Target Start/End: Complemental strand, 11839979 - 11839825
Alignment:
Q  67 actgaaatgataataagtaaatacttataaaaactgatatgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacattttaatatt 166  Q
    |||||||||| |||||| || ||||  |||  ||| ||||||||||||  |||| |||| |||||| ||||||| ||| |||| |||  |||||||| |     
T  11839979 actgaaatgacaataagcaagtactggtaaggacttatatgacaataagtaagtgtattgaaggactaatatgacaatattaacgaagtattttaatgtc 11839880  T
Q  167 agagactaatttgactaatgaaatgcacaatcaaagactattttcaaatttcgat 221  Q
    |  ||||| ||||||||| ||  |||||||||   ||||||||| ||||||||||    
T  11839879 aaggactattttgactaacgaggtgcacaatctgggactattttgaaatttcgat 11839825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 217
Target Start/End: Original strand, 29116280 - 29116430
Alignment:
Q  67 actgaaatgataataagtaaatacttataaaaactgatatgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacattttaatatt 166  Q
    |||||||||| | ||||||| || ||||||  ||| ||||||||||||| || |||||| || |||  ||||| |||| |||| ||| ||||||||| |     
T  29116280 actgaaatgacagtaagtaattatttataaggactaatatgacaataaataaatatattgaatgacttatatgttaatattaacgaagcattttaatgtc 29116379  T
Q  167 agagactaatttgactaatgaaatgcacaatcaaagactattttcaaattt 217  Q
    | | | || |||||| |||| | |||| |||||| ||||||||| ||||||    
T  29116380 acaaattattttgaccaatgcagtgcataatcaatgactattttgaaattt 29116430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 156 - 236
Target Start/End: Original strand, 35896069 - 35896150
Alignment:
Q  156 attttaatattagagactaatttgactaatgaaatgcacaatcaaagactattttcaaatttcgat-cattgaaagactatt 236  Q
    ||||||| ||||||||||| |||||||| || ||||||| || || |||||||||  ||||||||| |||| ||||||||||    
T  35896069 attttaacattagagactattttgactagtgtaatgcacgataaatgactattttagaatttcgatacattaaaagactatt 35896150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 67 - 184
Target Start/End: Original strand, 50384509 - 50384625
Alignment:
Q  67 actgaaatgataataagtaaatacttataaaaactgatatgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacattttaatatt 166  Q
    |||||||||| ||||| |||||||||||||  | |||||||| |||||  ||||||||| || ||| ||||||| |||  |||||||| ||||||| ||     
T  50384509 actgaaatgacaataaataaatacttataaggattgatatgataataagtaagtatattgaaagacgaatatgacaat-ataatgaaatattttaacatc 50384607  T
Q  167 agagactaatttgactaa 184  Q
    | | |||| |||||||||    
T  50384608 ataaactattttgactaa 50384625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 218
Target Start/End: Complemental strand, 7912610 - 7912538
Alignment:
Q  146 ttaatgaaacattttaatattagagactaatttgactaatgaaatgcacaatcaaagactattttcaaatttc 218  Q
    |||||||| ||||||||||| || ||||| |||||||| |||| |||||||| | |||||||||  |||||||    
T  7912610 ttaatgaagcattttaatatgagggactattttgactagtgaagtgcacaattagagactatttcaaaatttc 7912538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 217
Target Start/End: Original strand, 52700920 - 52701036
Alignment:
Q  101 tgatatgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacattttaatattagagactaatttgactaatgaaatgcacaatcaa 200  Q
    |||||||| |||||  | ||||||| ||||||   ||||| ||| ||||| ||||||||||| || | |||||| ||||| ||| ||| ||||||| ||     
T  52700920 tgatatgataataattatgtatattgaaggactgttatgacaatattaataaaacattttaacatgaaagactattttgattaaagaagtgcacaaacat 52701019  T
Q  201 agactattttcaaattt 217  Q
    |||||||||| ||||||    
T  52701020 agactattttaaaattt 52701036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 106 - 217
Target Start/End: Complemental strand, 51151012 - 51150901
Alignment:
Q  106 tgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacattttaatattagagactaatttgactaatgaaatgcacaatcaaagact 205  Q
    |||||||||  ||||||||| ||| || ||||||| ||| ||||  ||| |||||||| |||| ||||| ||| |||||  |||||||||||||   |||    
T  51151012 tgacaataagtaagtatattgaagtactaatatgacaatattaacaaaatattttaatgttagggactattttcactaacaaaatgcacaatcacgaact 51150913  T
Q  206 attttcaaattt 217  Q
    ||||| ||||||    
T  51150912 attttaaaattt 51150901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 217
Target Start/End: Complemental strand, 8170810 - 8170760
Alignment:
Q  167 agagactaatttgactaatgaaatgcacaatcaaagactattttcaaattt 217  Q
    |||||||| |||||||||  || ||||||||||||||||||||| ||||||    
T  8170810 agagactattttgactaacaaagtgcacaatcaaagactattttgaaattt 8170760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 217
Target Start/End: Complemental strand, 27395597 - 27395479
Alignment:
Q  99 actgatatgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacattttaatattagagactaatttgactaatgaaatgcacaatc 198  Q
    ||||| ||||||||||| |||||| || ||||||  |||| | ||| |||| | ||||||||||||| |  || || ||||||||| ||| || ||||||    
T  27395597 actgaaatgacaataaataagtatgttgaaggaccgatataacaatattaacgtaacattttaatatcaaggattattttgactaacgaagtgaacaatc 27395498  T
Q  199 aaagactattttcaaattt 217  Q
    ||| | |||||| ||||||    
T  27395497 aaatattattttaaaattt 27395479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 184
Target Start/End: Original strand, 45615718 - 45615796
Alignment:
Q  106 tgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacattttaatattagagactaatttgactaa 184  Q
    |||||||||  ||||||||| |||||| || |||| ||| ||||  ||  ||||||||||||||||||| |||||||||    
T  45615718 tgacaataagtaagtatattgaaggactaaaatgacaatattaacaaattattttaatattagagactattttgactaa 45615796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 190 - 241
Target Start/End: Complemental strand, 12922254 - 12922202
Alignment:
Q  190 tgcacaatcaaagactattttcaaatttcgat-cattgaaagactattttgac 241  Q
    |||||||||||| |||||||| |||||||||| |||||||| |||||| ||||    
T  12922254 tgcacaatcaaaaactattttgaaatttcgatacattgaaatactattgtgac 12922202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 217
Target Start/End: Original strand, 32934085 - 32934185
Alignment:
Q  117 aagtatattaaaggacaaatatgataatgttaatgaaacattttaatattagagactaatttgactaatgaaatgcacaatcaaagactattttcaaatt 216  Q
    |||||||||||| ||| ||| ||| ||| ||||  ||  |||||||| ||||| |||| ||||||||   || |||||||||||| |||||||| |||||    
T  32934085 aagtatattaaaagactaatgtgacaatattaacaaattattttaatgttagaaactattttgactagcaaagtgcacaatcaaaaactattttaaaatt 32934184  T
Q  217 t 217  Q
    |    
T  32934185 t 32934185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 4e-26; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 61 - 221
Target Start/End: Original strand, 34979065 - 34979225
Alignment:
Q  61 ataagaactgaaatgataataagtaaatacttataaaaactgatatgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacatttt 160  Q
    ||||| ||| |||| | ||||||| |||| ||||||  | ||||||||||||||  ||||||||| || ||| ||||||||||| |||| |||| |||||    
T  34979065 ataaggactaaaataacaataagtgaatatttataacgattgatatgacaataagtaagtatattgaatgactaatatgataatattaacgaaatatttt 34979164  T
Q  161 aatattagagactaatttgactaatgaaatgcacaatcaaagactattttcaaatttcgat 221  Q
    ||| | |||||||| |||||||||  ||||||||||| ||| |||||||| ||||||||||    
T  34979165 aatgtgagagactattttgactaacaaaatgcacaattaaaaactattttaaaatttcgat 34979225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 73 - 237
Target Start/End: Complemental strand, 45681327 - 45681162
Alignment:
Q  73 atgataataagtaaatacttataaaaactgatatgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacattttaatattagagac 172  Q
    |||| ||||||||| || ||||||  ||||||||||||||||| | ||| |||   |||| ||||||||||| |||| |||||||||||| || ||||||    
T  45681327 atgacaataagtaagtatttataatgactgatatgacaataaatacgtaaattgggggactaatatgataatattaaagaaacattttaacataagagac 45681228  T
Q  173 taatttgactaatgaaatgcacaatcaaagactattttcaaatttcgat-cattgaaagactattt 237  Q
    || ||||| ||||  |  |||||||||| ||||||||| |||||| ||| |||||| |||||||||    
T  45681227 tattttgattaatatagcgcacaatcaaggactattttgaaattttgatacattgagagactattt 45681162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 89 - 235
Target Start/End: Complemental strand, 46008714 - 46008567
Alignment:
Q  89 acttataaaaactgatatgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacattttaatattagagactaatttgactaatgaa 188  Q
    |||||||| |||||||||||||||||| |||||||||||| ||  ||||||| ||| |||| |||  |||||||| ||| |||||| ||| |||||  ||    
T  46008714 acttataataactgatatgacaataaataagtatattaaaagattaatatgacaatattaacgaattattttaatgttaaagactattttaactaacaaa 46008615  T
Q  189 atgcacaatcaaagactattttcaaatttcgat-cattgaaagactat 235  Q
    ||||| ||| ||||| |||||| |||| ||||| |||||||| |||||    
T  46008614 atgcataattaaagattattttgaaatctcgatacattgaaaaactat 46008567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 78 - 236
Target Start/End: Original strand, 23195628 - 23195787
Alignment:
Q  78 aataagtaaatacttataaaaactgatatgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacattttaatattagagactaatt 177  Q
    |||||||||||| ||| ||  ||||||||||||||||  ||||||||| || ||| ||||||| ||| |||| |||| | |||||| | | |||||| ||    
T  23195628 aataagtaaatatttaaaaggactgatatgacaataattaagtatattgaaagactaatatgacaatattaacgaaatactttaatgtcatagactattt 23195727  T
Q  178 tgactaatgaaatgcacaatcaaagactattttcaaatttcgat-cattgaaagactatt 236  Q
      |||||||||||||||||||| | | |||||| ||||||  || |||||||||||||||    
T  23195728 gaactaatgaaatgcacaatcagaaattattttaaaattttaatacattgaaagactatt 23195787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 71 - 236
Target Start/End: Original strand, 1183116 - 1183282
Alignment:
Q  71 aaatgataataagtaaatacttataaaaactgatatgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacattttaatattagag 170  Q
    |||||| ||||||||| |||||||||  ||||||||||||||||  |  |||||| || |||  |||||| ||| ||| ||||| |||||||||| | ||    
T  1183116 aaatgacaataagtaagtacttataaggactgatatgacaataagtacatatattgaatgactgatatgacaatattagtgaaatattttaatatcaaag 1183215  T
Q  171 actaatttgactaatgaaatgcacaatcaaagactattttcaaatttcgat-cattgaaagactatt 236  Q
    |||| |||||||   ||| |||||||||| ||| |||||| |||||||| | ||||||| |||||||    
T  1183216 actattttgactgtcgaagtgcacaatcatagattattttgaaatttcggtacattgaatgactatt 1183282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 67 - 221
Target Start/End: Complemental strand, 14984617 - 14984463
Alignment:
Q  67 actgaaatgataataagtaaatacttataaaaactgatatgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacattttaatatt 166  Q
    |||| ||||| ||||| ||| |||||| ||  ||| |||||||||||| |||||||||| |||||  ||||||| ||| |||| |||| |||||||| |     
T  14984617 actggaatgacaataaataagtacttaaaaggactcatatgacaataagcaagtatattgaaggattaatatgacaatattaacgaaatattttaatgtc 14984518  T
Q  167 agagactaatttgactaatgaaatgcacaatcaaagactattttcaaatttcgat 221  Q
    ||  |||| ||||||||| ||| ||||||||||  || |||||| ||||||||||    
T  14984517 aggaactattttgactaacgaagtgcacaatcagggagtattttgaaatttcgat 14984463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 88 - 217
Target Start/End: Complemental strand, 20948351 - 20948225
Alignment:
Q  88 tacttataaaaactgatatgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacattttaatattagagactaatttgactaatga 187  Q
    ||||| |||||| ||||||||||||||| ||||||||| ||| ||  |||||||||| |||||| ||||||||||||| ||||| |  ||||| |||  |    
T  20948351 tacttgtaaaaattgatatgacaataaataagtatattgaagaactgatatgataatattaatg-aacattttaatatcagagatttttttgaataa--a 20948255  T
Q  188 aatgcacaatcaaagactattttcaaattt 217  Q
    |||||| ||||||| |||||||| ||||||    
T  20948254 aatgcataatcaaatactatttttaaattt 20948225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 117 - 217
Target Start/End: Complemental strand, 21568462 - 21568362
Alignment:
Q  117 aagtatattaaaggacaaatatgataatgttaatgaaacattttaatattagagactaatttgactaatgaaatgcacaatcaaagactattttcaaatt 216  Q
    ||||||||| |||||||||||||| ||| |||||||| |||||||| || |  | ||| ||||||||||||| ||||||||||  || |||||| |||||    
T  21568462 aagtatattgaaggacaaatatgagaatattaatgaagcattttaacatcatgggctattttgactaatgaattgcacaatcagcgattattttgaaatt 21568363  T
Q  217 t 217  Q
    |    
T  21568362 t 21568362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 67 - 153
Target Start/End: Complemental strand, 26499931 - 26499845
Alignment:
Q  67 actgaaatgataataagtaaatacttataaaaactgatatgacaataaacaagtatattaaaggacaaatatgataatgttaatgaa 153  Q
    |||||||||||||||||||| |||||| ||  |||||||||| |||||| ||||||||| || |||  |||||| ||| ||||||||    
T  26499931 actgaaatgataataagtaagtacttagaaggactgatatgataataaataagtatattgaatgactgatatgaaaatattaatgaa 26499845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 88 - 162
Target Start/End: Complemental strand, 30843729 - 30843655
Alignment:
Q  88 tacttataaaaactgatatgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacattttaa 162  Q
    |||||||||  ||||||||||||||||| ||||||||| || ||| ||||||| ||| |||||||| ||||||||    
T  30843729 tacttataaggactgatatgacaataaataagtatattgaaagactaatatgacaatattaatgaagcattttaa 30843655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 69 - 197
Target Start/End: Complemental strand, 43908809 - 43908681
Alignment:
Q  69 tgaaatgataataagtaaatacttataaaaactgatatgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacattttaatattag 168  Q
    |||||||| ||||| ||| |||||||||| |||||||||| |||| | || |||||| |  ||| ||||||||||| |||||||| | |||||| ||| |    
T  43908809 tgaaatgacaataaataagtacttataaagactgatatgataatatataaatatattgattgactaatatgataatattaatgaagctttttaacatttg 43908710  T
Q  169 agactaatttgactaatgaaatgcacaat 197  Q
    ||| |  |||||||||  ||||| |||||    
T  43908709 agatttttttgactaacaaaatgtacaat 43908681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 217
Target Start/End: Original strand, 14194850 - 14194968
Alignment:
Q  99 actgatatgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacattttaatattagagactaatttgactaatgaaatgcacaatc 198  Q
    ||||||| ||||||||  |||||||||||| |||  |||||| ||| ||||||||  |||||||||| ||||||||  |||||| | ||| |||| |||     
T  14194850 actgatacgacaataactaagtatattaaatgactgatatgacaatattaatgaagtattttaatatcagagactatattgacttaagaagtgcataata 14194949  T
Q  199 aaagactattttcaaattt 217  Q
    |  ||||||||| ||||||    
T  14194950 atggactattttgaaattt 14194968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 217
Target Start/End: Original strand, 39336680 - 39336828
Alignment:
Q  69 tgaaatgataataagtaaatacttataaaaactgatatgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacattttaatattag 168  Q
    ||||| || ||||| |||||||||||||  || ||||||| |||||  ||||||||| |||||  ||||||  ||| | |||||| |||||||| |  ||    
T  39336680 tgaaaagacaataaataaatacttataaggacggatatgataataagtaagtatattgaaggattaatatgtcaatataaatgaagcattttaacagcag 39336779  T
Q  169 agactaatttgactaatgaaatgcacaatcaaagactattttcaaattt 217  Q
    ||| || | ||||||| ||| | | |||||||| |||||||| ||||||    
T  39336780 agattattctgactaacgaagtccgcaatcaaaaactattttaaaattt 39336828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 118 - 236
Target Start/End: Original strand, 12832219 - 12832338
Alignment:
Q  118 agtatattaaaggacaaatatgataatgttaatgaaacattttaatattagagactaatttgactaatgaaatgcacaatcaaagactattttcaaattt 217  Q
    |||||||| ||||||  |||||| ||| |||||||| ||||||||||| |||||||| ||||| | | ||| |||||| | |  |||||||   || |||    
T  12832219 agtatattgaaggacttatatgacaatattaatgaagcattttaatataagagactattttgatttacgaagtgcacagttagggactattgcgaagttt 12832318  T
Q  218 cgat-cattgaaagactatt 236  Q
    |||| |||||||||||||||    
T  12832319 cgatacattgaaagactatt 12832338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 135 - 218
Target Start/End: Original strand, 47199924 - 47200007
Alignment:
Q  135 atatgataatgttaatgaaacattttaatattagagactaatttgactaatgaaatgcacaatcaaagactattttcaaatttc 218  Q
    |||||||||| |||||||| |||||||||||  || |||| |||||||||  || || || ||||| ||||||||| |||||||    
T  47199924 atatgataatattaatgaagcattttaatatcggaaactattttgactaacaaagtgtacgatcaatgactattttgaaatttc 47200007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 221
Target Start/End: Complemental strand, 47944385 - 47944340
Alignment:
Q  176 tttgactaatgaaatgcacaatcaaagactattttcaaatttcgat 221  Q
    |||||||||  || ||||||||||||||||||||| ||||||||||    
T  47944385 tttgactaacaaagtgcacaatcaaagactattttaaaatttcgat 47944340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 153
Target Start/End: Complemental strand, 3941750 - 3941670
Alignment:
Q  73 atgataataagtaaatacttataaaaactgatatgacaataaacaagtatattaaaggacaaatatgataatgttaatgaa 153  Q
    |||||||||||||| ||  |||||  |||||||||| |||||  | ||||||| |||||| ||||||| ||| ||||||||    
T  3941750 atgataataagtaagtatatataacgactgatatgataataagtaggtatattgaaggactaatatgacaatattaatgaa 3941670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 174
Target Start/End: Complemental strand, 36080654 - 36080626
Alignment:
Q  146 ttaatgaaacattttaatattagagacta 174  Q
    |||||||||||||||||||||||||||||    
T  36080654 ttaatgaaacattttaatattagagacta 36080626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 126
Target Start/End: Original strand, 39530585 - 39530633
Alignment:
Q  78 aataagtaaatacttataaaaactgatatgacaataaacaagtatatta 126  Q
    ||||||||| || ||||||| ||| |||||||||||| |||||||||||    
T  39530585 aataagtaagtaattataaagactaatatgacaataagcaagtatatta 39530633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 43838820 - 43838868
Alignment:
Q  169 agactaatttgactaatgaaatgcacaatcaaagactattttcaaattt 217  Q
    |||||| |||||||||  |||||||||||||| ||||||||| ||||||    
T  43838820 agactattttgactaacaaaatgcacaatcaatgactattttaaaattt 43838868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 218
Target Start/End: Original strand, 47944547 - 47944595
Alignment:
Q  170 gactaatttgactaatgaaatgcacaatcaaagactattttcaaatttc 218  Q
    ||||| ||||| ||| ||| ||||||||||||||||||||| |||||||    
T  47944547 gactattttgattaacgaagtgcacaatcaaagactattttaaaatttc 47944595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 61 - 221
Target Start/End: Complemental strand, 10228921 - 10228757
Alignment:
Q  61 ataagaactgaaatgataataagtaaatac----ttataaaaactgatatgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaaca 156  Q
    ||||||| |||||||||| ||||||||||     |||||| |||| ||||||||||||  ||||||||| |||||| ||||||  ||| ||||  |||||    
T  10228921 ataagaattgaaatgatagtaagtaaataaatatttataagaacttatatgacaataattaagtatattgaaggactaatatgtaaattttaacaaaaca 10228822  T
Q  157 ttttaatattagagactaatttgactaatgaaatgcacaatcaaagactattttcaaatttcgat 221  Q
    ||||||  | | |||||| ||||||||| ||| ||||||||||||||||||||| ||||||||||    
T  10228821 ttttaaggtcaaagactattttgactaacgaattgcacaatcaaagactattttgaaatttcgat 10228757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 67 - 221
Target Start/End: Complemental strand, 32996447 - 32996294
Alignment:
Q  67 actgaaatgataataagtaaatacttataaaaactgatatgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacattttaatatt 166  Q
    |||||||||| ||||| ||  |||||||||  ||| |||||| |||||| ||||||||| |||||| ||||||| ||| ||||  ||  | |||||||||    
T  32996447 actgaaatgacaataaatag-tacttataaggactaatatgataataaataagtatattgaaggactaatatgacaatattaacaaattaatttaatatt 32996349  T
Q  167 agagactaatttgactaatgaaatgcacaatcaaagactattttcaaatttcgat 221  Q
    |||||||| ||| || |||||| || ||||||| |||||||||| ||||||||||    
T  32996348 agagactattttaacaaatgaagtgtacaatcagagactatttttaaatttcgat 32996294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 67 - 221
Target Start/End: Complemental strand, 5362455 - 5362301
Alignment:
Q  67 actgaaatgataataagtaaatacttataaaaactgatatgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacattttaatatt 166  Q
    |||||||| | |||||||||||| ||||||  | |||||||| |||||| ||||||||| |||||| |||||||  || |||| |||  ||||||||||     
T  5362455 actgaaataacaataagtaaatatttataaggattgatatgataataaataagtatattgaaggactaatatgaccatattaacgaagtattttaatatc 5362356  T
Q  167 agagactaatttgactaatgaaatgcacaatcaaagactattttcaaatttcgat 221  Q
    || ||||| |||||||||  || | ||||||||   |||||||| ||||||||||    
T  5362355 agggactattttgactaacaaattacacaatcatgaactattttgaaatttcgat 5362301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 117 - 217
Target Start/End: Complemental strand, 24325502 - 24325399
Alignment:
Q  117 aagtatattaaaggacaaatatgataatgttaatg-aaacattttaatattagagacta--atttgactaatgaaatgcacaatcaaagactattttcaa 213  Q
    ||||||||| |||||| ||||||||||| |||||| ||| |||| ||||||||||||||   ||| |||||  || |||||||||||| |||||||| ||    
T  24325502 aagtatattgaaggaccaatatgataatattaatgaaaaaatttcaatattagagactatttttttactaacaaattgcacaatcaaaaactattttgaa 24325403  T
Q  214 attt 217  Q
    ||||    
T  24325402 attt 24325399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 117 - 217
Target Start/End: Complemental strand, 38838626 - 38838526
Alignment:
Q  117 aagtatattaaaggacaaatatgataatgttaatgaaacattttaatattagagactaatttgactaatgaaatgcacaatcaaagactattttcaaatt 216  Q
    |||||||||||| ||| || |||||||| ||||  ||  ||||||||||||| ||||| ||||||||   || ||||||||||| ||||||||| |||||    
T  38838626 aagtatattaaaagactaacatgataatattaacaaattattttaatattagggactattttgactagaaaagtgcacaatcaaggactattttaaaatt 38838527  T
Q  217 t 217  Q
    |    
T  38838526 t 38838526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 217
Target Start/End: Complemental strand, 3117002 - 3116858
Alignment:
Q  71 aaatgataataagtaaatacttataaaaactgatatgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacattttaatattagag 170  Q
    ||||||||||||  || |||||||||| |||||||| | |||||  ||||||||| || ||| ||||||| ||| ||||||||| |||| || || || |    
T  3117002 aaatgataataaacaagtacttataaagactgatataataataagtaagtatattgaaagactaatatgacaatattaatgaaatatttgaacatcag-g 3116904  T
Q  171 actaatttgactaatgaaatgcacaatcaaagactattttcaaattt 217  Q
    || | |||||||||  ||||||||| | ||| |||||||| ||||||    
T  3116903 ac-attttgactaacaaaatgcacatttaaaaactattttaaaattt 3116858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 67 - 152
Target Start/End: Original strand, 26905114 - 26905199
Alignment:
Q  67 actgaaatgataataagtaaatacttataaaaactgatatgacaataaacaagtatattaaaggacaaatatgataatgttaatga 152  Q
    |||||||||| ||||| ||| |||||| ||  ||| ||||||||||||  ||||||||| |||||  ||||||||||| |||||||    
T  26905114 actgaaatgacaataaataagtacttacaaggactaatatgacaataagtaagtatattgaaggaataatatgataatattaatga 26905199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 72 - 217
Target Start/End: Complemental strand, 27376428 - 27376284
Alignment:
Q  72 aatgataataagtaaatacttataaaaactgatatgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacattttaatattagaga 171  Q
    ||||||| | |||||||| ||||||  |||| ||| |||||||  ||||||||| ||  || ||||||||||| |||| |||| |||| || || || ||    
T  27376428 aatgatagtgagtaaatatttataaggactgctataacaataagtaagtatattgaaaaactaatatgataatattaacgaaatatttcaacatcagtga 27376329  T
Q  172 ctaatttgactaatgaaatgcacaatcaaagactattttcaaattt 217  Q
    | | ||||||||| ||| ||||||||  ||||||||||| ||||||    
T  27376328 ccattttgactaaagaagtgcacaat-taagactattttgaaattt 27376284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 167
Target Start/End: Original strand, 49078117 - 49078213
Alignment:
Q  71 aaatgataataagtaaatacttataaaaactgatatgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacattttaatatta 167  Q
    |||||| ||||| ||| || ||||||  | |||||||||||| ||||| |||||| |||||   |||||| ||| ||||||||||||||||| ||||    
T  49078117 aaatgacaataactaagtatttataatgattgatatgacaattaacaaatatattgaaggattgatatgacaatattaatgaaacattttaacatta 49078213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 146 - 210
Target Start/End: Original strand, 26910102 - 26910168
Alignment:
Q  146 ttaatgaaacattttaatattaga--gactaatttgactaatgaaatgcacaatcaaagactatttt 210  Q
    ||||||||||||||||| |||| |  || || ||||||||||||| ||||||||||| |||||||||    
T  26910102 ttaatgaaacattttaacattatatggattattttgactaatgaagtgcacaatcaaggactatttt 26910168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 80 - 219
Target Start/End: Original strand, 40354978 - 40355117
Alignment:
Q  80 taagtaaatacttataaaaactgatatgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacattttaatattagagactaatttg 179  Q
    ||||||| |||||| ||  ||||| ||||||||||  | ||||||  ||| || ||||||| ||| ||||||||   ||||||| | |  ||||| ||||    
T  40354978 taagtaattacttacaaggactgacatgacaataagtatgtatatagaagaactaatatgacaatattaatgaagtgttttaatgtaaatgactattttg 40355077  T
Q  180 actaatgaaatgcacaatcaaagactattttcaaatttcg 219  Q
    |||||   | |||||||||| |||||||||||||||||||    
T  40355078 actaacatagtgcacaatcagagactattttcaaatttcg 40355117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 197
Target Start/End: Complemental strand, 41870644 - 41870534
Alignment:
Q  88 tacttataaaaactgatatgacaataaacaagtatattaaagg-acaaatatgataatgttaatgaaacattttaatattagagactaatttgactaatg 186  Q
    |||||||||  ||||||||||||||||  || ||||||||| | |   |||||| ||| ||| ||||||||||||||||| ||||||  |||||||||      
T  41870644 tacttataaggactgatatgacaataagtaaatatattaaaagtattgatatgacaatattagtgaaacattttaatattggagactgttttgactaaca 41870545  T
Q  187 aaatgcacaat 197  Q
    |||| ||||||    
T  41870544 aaatacacaat 41870534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 114
Target Start/End: Original strand, 10476767 - 10476803
Alignment:
Q  78 aataagtaaatacttataaaaactgatatgacaataa 114  Q
    |||||||||||||||||||||||| ||||||| ||||    
T  10476767 aataagtaaatacttataaaaactaatatgacgataa 10476803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 236
Target Start/End: Complemental strand, 23441574 - 23441494
Alignment:
Q  157 ttttaatattagagactaatttgactaatgaaatgcacaatcaaagactattttcaaatttcgat-cattgaaagactatt 236  Q
    |||||| |||| | |||| ||||| ||| ||| |||||||||||  |||||||| |||||||||| ||||||| |||||||    
T  23441574 ttttaacattaaaaactattttgattaacgaagtgcacaatcaataactattttaaaatttcgatacattgaaggactatt 23441494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0687 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: scaffold0687
Description:

Target: scaffold0687; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 71 - 236
Target Start/End: Complemental strand, 1784 - 1618
Alignment:
Q  71 aaatgataataagtaaatacttataaaaactgatatgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacattttaatattagag 170  Q
    |||||| ||||||||||||  |||||| |||  |||||||||||  || |||||| || ||  ||||||| ||| ||||||| |||||| ||||||||||    
T  1784 aaatgacaataagtaaatatatataaagactagtatgacaataagtaaatatattgaaagattaatatgacaatattaatgagacatttcaatattagag 1685  T
Q  171 actaatttgactaatgaaatgcacaatcaaagactattttcaaatttcgat-cattgaaagactatt 236  Q
    |||| |||||| || ||| |||||||||||| | |||||| |||||| ||| |||||||||||||||    
T  1684 actattttgaccaacgaagtgcacaatcaaaaattattttaaaattttgatacattgaaagactatt 1618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 7e-25; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 71 - 236
Target Start/End: Complemental strand, 7604100 - 7603934
Alignment:
Q  71 aaatgataataagtaaatacttataaaaactgatatgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacattttaatattagag 170  Q
    |||||| ||||||||||||  |||||| |||  |||||||||||  || |||||| || ||  ||||||| ||| ||||||| |||||| ||||||||||    
T  7604100 aaatgacaataagtaaatatatataaagactagtatgacaataagtaaatatattgaaagattaatatgacaatattaatgagacatttcaatattagag 7604001  T
Q  171 actaatttgactaatgaaatgcacaatcaaagactattttcaaatttcgat-cattgaaagactatt 236  Q
    |||| |||||| || ||| |||||||||||| | |||||| |||||| ||| |||||||||||||||    
T  7604000 actattttgaccaacgaagtgcacaatcaaaaattattttaaaattttgatacattgaaagactatt 7603934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 72 - 221
Target Start/End: Original strand, 33508582 - 33508731
Alignment:
Q  72 aatgataataagtaaatacttataaaaactgatatgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacattttaatattagaga 171  Q
    ||||| ||||||||| ||| ||||| ||||||||| | |||||  ||||||||| |||||| |||| |||||| ||||||||  |||||||| | |||||    
T  33508582 aatgacaataagtaagtacatataataactgatataataataagtaagtatattgaaggactaatacgataatattaatgaagtattttaatgtcagaga 33508681  T
Q  172 ctaatttgactaatgaaatgcacaatcaaagactattttcaaatttcgat 221  Q
     || ||||| |||||||||||||| ||||  |||||||| ||||||||||    
T  33508682 ttattttgattaatgaaatgcacactcaataactattttgaaatttcgat 33508731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 105 - 217
Target Start/End: Complemental strand, 21600575 - 21600463
Alignment:
Q  105 atgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacattttaatattagagactaatttgactaatgaaatgcacaatcaaagac 204  Q
    ||||||||||  ||||||||| |||||||||||||| ||| ||||||||| ||||||| || || ||||||||| | ||| ||||||||||||||| |||    
T  21600575 atgacaataagtaagtatattgaaggacaaatatgacaatattaatgaaatattttaacatcagtgactaattttattaacgaaatgcacaatcaatgac 21600476  T
Q  205 tattttcaaattt 217  Q
    |||||| ||||||    
T  21600475 tattttaaaattt 21600463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 71 - 210
Target Start/End: Complemental strand, 42660010 - 42659871
Alignment:
Q  71 aaatgataataagtaaatacttataaaaactgatatgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacattttaatattagag 170  Q
    |||||| ||||||||| | |||||||  |||||| |||||||||  ||||||||| || ||| ||||||| ||| || ||||||||||||||||| | ||    
T  42660010 aaatgacaataagtaagtgcttataaggactgatgtgacaataagtaagtatattgaatgactaatatgacaatattgatgaaacattttaatatcaaag 42659911  T
Q  171 actaatttgactaatgaaatgcacaatcaaagactatttt 210  Q
    || | ||||||||||| | |||||||||||| | ||||||    
T  42659910 acaactttgactaatggattgcacaatcaaaaattatttt 42659871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 67 - 217
Target Start/End: Complemental strand, 2987090 - 2986941
Alignment:
Q  67 actgaaatgataataagtaaatacttataaaaactgatatgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacattttaatatt 166  Q
    |||||||| | ||||| |||||||||||||  |||  |||||||||||  ||||||||| || ||| ||||||||| | ||||||||||||||||| |||    
T  2987090 actgaaataacaataaataaatacttataaggactagtatgacaataagtaagtatattgaaagactaatatgatagtattaatgaaacattttaacatt 2986991  T
Q  167 agagactaatttgactaatgaaatgcacaatcaaagactattttcaaattt 217  Q
    | | |||| |||||||||  |||||||| |||| | |||||||| ||||||    
T  2986990 aaatactattttgactaacaaaatgcac-atcataaactattttaaaattt 2986941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 67 - 221
Target Start/End: Original strand, 21602068 - 21602225
Alignment:
Q  67 actgaaatgataataagtaaatacttataaaa---actgatatgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacattttaat 163  Q
    |||||||||| ||||||||||||||||||| |   || ||||| |||||||   |||||||| |||||| ||||||| ||| |||| |||  ||||||||    
T  21602068 actgaaatgacaataagtaaatacttataataaggacggatataacaataagttagtatattgaaggactaatatgacaatattaacgaattattttaat 21602167  T
Q  164 attagagactaatttgactaatgaaatgcacaatcaaagactattttcaaatttcgat 221  Q
     | || ||||| ||||| ||||||| ||| |||||   ||||||||| ||||||||||    
T  21602168 gtcagggactattttgattaatgaagtgcgcaatcggggactattttgaaatttcgat 21602225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 91 - 218
Target Start/End: Complemental strand, 41616828 - 41616701
Alignment:
Q  91 ttataaaaactgatatgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacattttaatattagagactaatttgactaatgaaat 190  Q
    ||||||| | ||||||||||||||| |||||||| |||||||  | |||||| | ||||| ||||||||||||||   |||||| ||||||||| ||| |    
T  41616828 ttataaagattgatatgacaataaataagtatataaaaggactgaaatgatattattaataaaacattttaatatcgtagactattttgactaacgaagt 41616729  T
Q  191 gcacaatcaaagactattttcaaatttc 218  Q
    ||| ||  ||||| |||||| |||||||    
T  41616728 gcataacaaaagattattttaaaatttc 41616701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 117 - 236
Target Start/End: Complemental strand, 21216055 - 21215939
Alignment:
Q  117 aagtatattaaaggacaaatatgataatgttaatgaaacattttaatattagagactaatttgactaatgaaatgcacaatcaaagactattttcaaatt 216  Q
    ||||||||||||||||  |||||| ||  ||||| || ||||||||||| |||||||    ||||||| ||| ||||||||||| ||||||||| |||||    
T  21216055 aagtatattaaaggactgatatgacaacattaattaagcattttaatatcagagact----tgactaacgaagtgcacaatcaatgactattttgaaatt 21215960  T
Q  217 tcgat-cattgaaagactatt 236  Q
    || || ||||||| |||||||    
T  21215959 tcaatacattgaaggactatt 21215939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 120
Target Start/End: Original strand, 44362512 - 44362571
Alignment:
Q  61 ataagaactgaaatgataataagtaaatacttataaaaactgatatgacaataaacaagt 120  Q
    ||||| ||| |||||| ||||||||| ||||||||||||||||||||||||||| |||||    
T  44362512 ataaggactaaaatgacaataagtaagtacttataaaaactgatatgacaataaccaagt 44362571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 82 - 184
Target Start/End: Complemental strand, 21145565 - 21145463
Alignment:
Q  82 agtaaatacttataaaaactgatatgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacattttaatattagagactaatttgac 181  Q
    ||||| |||||||||  |||||||||||| |||  ||||||||| |  ||| ||||||||||| |||| ||||||||||||  | |||||||| ||||||    
T  21145565 agtaagtacttataaggactgatatgacagtaagtaagtatattgagagactaatatgataatattaacgaaacattttaacgtaagagactattttgac 21145466  T
Q  182 taa 184  Q
    |||    
T  21145465 taa 21145463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 117 - 221
Target Start/End: Complemental strand, 6393943 - 6393839
Alignment:
Q  117 aagtatattaaaggacaaatatgataatgttaatgaaacattttaatattagagactaatttgactaatgaaatgcacaatcaaagactattttcaaatt 216  Q
    ||||||||| ||| || ||||||||||| |||| |||  |||||||| ||||  |||| |||||||||| || ||||||||||   |||||||| |||||    
T  6393943 aagtatattgaagaactaatatgataatattaaagaactattttaatgttaggaactattttgactaataaagtgcacaatcatgaactattttgaaatt 6393844  T
Q  217 tcgat 221  Q
    |||||    
T  6393843 tcgat 6393839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 244
Target Start/End: Complemental strand, 42844975 - 42844865
Alignment:
Q  135 atatgataatgttaatgaaacattttaatattagagactaatttgactaatgaaatgcacaatcaaagactattttcaaatttcgat-cattgaaagact 233  Q
    |||||| ||| |||||||||||||||||||| ||  |||| |||||||||| || || |||||||||| |||||   |||||| ||| ||||||| |||     
T  42844975 atatgacaatattaatgaaacattttaatatcaggaactattttgactaattaagtgtacaatcaaagcctattcgaaaattttgatacattgaaggaca 42844876  T
Q  234 attttgaccaa 244  Q
    ||| |||||||    
T  42844875 attgtgaccaa 42844865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 156 - 217
Target Start/End: Original strand, 7680994 - 7681055
Alignment:
Q  156 attttaatattagagactaatttgactaatgaaatgcacaatcaaagactattttcaaattt 217  Q
    |||||||| |||| ||| | ||||||||| |||||||||||||||| |||||||| ||||||    
T  7680994 attttaatgttagggacgattttgactaacgaaatgcacaatcaaatactattttaaaattt 7681055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 106 - 209
Target Start/End: Complemental strand, 36754739 - 36754636
Alignment:
Q  106 tgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacattttaatattagagactaatttgactaatgaaatgcacaatcaaagact 205  Q
    |||||||||| ||||||||| |||||| ||||||| ||| | ||||||  |||| ||| |||| ||| | ||||||||||||| |  ||||||| ||||     
T  36754739 tgacaataaataagtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttagggaccattttgactaatgaactatacaatcagagaca 36754640  T
Q  206 attt 209  Q
    ||||    
T  36754639 attt 36754636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 217
Target Start/End: Complemental strand, 13003072 - 13002958
Alignment:
Q  103 atatgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacattttaatattagagactaatttgactaatgaaatgcacaatcaaag 202  Q
    ||||||||||||  ||||| ||||| |||  ||||| | ||| |||||| ||||||||||| | ||| || | |||||||||   | |||| ||||||||    
T  13003072 atatgacaataagtaagtacattaagggattaatataacaatattaatgcaacattttaatgtaagaaacaattttgactaacatagtgcataatcaaag 13002973  T
Q  203 actattttcaaattt 217  Q
    |||||||| ||||||    
T  13002972 actattttaaaattt 13002958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 199
Target Start/End: Original strand, 34949105 - 34949201
Alignment:
Q  103 atatgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacattttaatattagagactaatttgactaatgaaatgcacaatca 199  Q
    |||||| |||||  || |||||| |||||| ||||||| ||| |||  |||||||||||||||||   |||| |||||||||  ||| |||||||||    
T  34949105 atatgataataagtaactatatttaaggactaatatgacaatattatcgaaacattttaatattaagaactattttgactaacaaaacgcacaatca 34949201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 127
Target Start/End: Original strand, 37215397 - 37215457
Alignment:
Q  67 actgaaatgataataagtaaatacttataaaaactgatatgacaataaacaagtatattaa 127  Q
    ||||| |||||||  ||||| ||||||||||| ||||||| | |||||| |||||||||||    
T  37215397 actgatatgataagcagtaagtacttataaaagctgatatcaaaataaataagtatattaa 37215457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 4e-23; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 67 - 217
Target Start/End: Original strand, 33550979 - 33551130
Alignment:
Q  67 actgaaatgataataagtaaatacttataaaaactgatatgacaataaacaagtata-ttaaaggacaaatatgataatgttaatgaaacattttaatat 165  Q
    ||||||||||||||| ||||||||||||||  ||| |||| |||||||| ||||||| | || |||| ||||||||||| |||| ||||||||| || ||    
T  33550979 actgaaatgataatatgtaaatacttataaggactaatataacaataaataagtatactgaagggactaatatgataatattaaagaaacatttcaacat 33551078  T
Q  166 tagagactaatttgactaatgaaatgcacaatcaaagactattttcaaattt 217  Q
     ||| | || ||||||||| |||||||||||||| | | |||||| ||||||    
T  33551079 cagaaattattttgactaacgaaatgcacaatcagataatattttaaaattt 33551130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 61 - 236
Target Start/End: Original strand, 10067609 - 10067786
Alignment:
Q  61 ataagaactgaaatgataataagtaaatacttataaaaactgatatgac-aataaacaagtatattaaaggacaaatatgataatgttaatgaaacattt 159  Q
    |||||||||||||||| ||| ||||| || ||||||  ||||||||||| |||||  ||||||||| || ||| ||||||| ||| ||||  ||  ||||    
T  10067609 ataagaactgaaatgacaattagtaagtaattataaggactgatatgacaaataagtaagtatattgaatgactaatatgacaatattaacaaagtattt 10067708  T
Q  160 taatattagagactaatttgactaatgaaatgcacaatcaaagactattttcaaatttcgat-cattgaaagactatt 236  Q
    |||| | |||||||| ||||| |||  |||| |||||||| |||||||||| |||||||||| |||||| ||||||||    
T  10067709 taatgtcagagactattttgattaacaaaatacacaatcagagactattttaaaatttcgatacattgagagactatt 10067786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 67 - 217
Target Start/End: Original strand, 21020992 - 21021138
Alignment:
Q  67 actgaaatgataataagtaaatacttataaaaactgatatgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacattttaatatt 166  Q
    |||||||||| ||||||||| |||||||||| || ||||||| |||||    ||||||| |||||| |||||||||||  ||| |||| |||||||| ||    
T  21020992 actgaaatgacaataagtaagtacttataaagaccgatatgataataa----gtatattgaaggactaatatgataataataacgaaatattttaatgtt 21021087  T
Q  167 agagactaatttgactaatgaaatgcacaatcaaagactattttcaaattt 217  Q
    |  ||||| |||||||||| ||||||| ||||||  |||||||| ||||||    
T  21021088 aatgactattttgactaataaaatgcataatcaataactattttaaaattt 21021138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 67 - 220
Target Start/End: Complemental strand, 10219743 - 10219595
Alignment:
Q  67 actgaaatgataataagtaaatacttataaaaactgatatgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacattttaatatt 166  Q
    |||| ||||| |||||||||||||||||||| ||||||||||||||    ||||||| ||||||||  |||||| ||| |||| |||  |||||||  |     
T  10219743 actgcaatgacaataagtaaatacttataaagactgatatgacaat----aagtatactaaaggac-tatatgacaatattaacgaattattttaacgtc 10219649  T
Q  167 agagactaatttgactaatgaaatgcacaatcaaagactattttcaaatttcga 220  Q
    |||||||| |||||||||  || ||||||||||   |||||||| |||||||||    
T  10219648 agagactattttgactaacaaagtgcacaatcaggaactattttgaaatttcga 10219595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 99 - 218
Target Start/End: Original strand, 9307391 - 9307509
Alignment:
Q  99 actgatatgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacattttaatattagagactaatttgactaatgaaatgcacaatc 198  Q
    ||||| |||| |||||  ||||||||| |||||| ||||||| ||||||||||||  |||||||| | || |||| ||||||| ||||||||||||| ||    
T  9307391 actgaaatgaaaataagtaagtatattgaaggactaatatgacaatgttaatgaattattttaatgtcagggact-atttgacaaatgaaatgcacattc 9307489  T
Q  199 aaagactattttcaaatttc 218  Q
    |  ||||||||| |||||||    
T  9307490 agggactattttaaaatttc 9307509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 67 - 162
Target Start/End: Original strand, 28747928 - 28748028
Alignment:
Q  67 actgaaatgataataagtaaatacttataaaaa-----ctgatatgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacatttta 161  Q
    |||||||||| || |||||||||||||||||||     | |||||||| |||| |||||||||| || ||| ||||||| ||||||||| || |||||||    
T  28747928 actgaaatgacaagaagtaaatacttataaaaacggatcggatatgactataagcaagtatattgaatgactaatatgacaatgttaataaagcatttta 28748027  T
Q  162 a 162  Q
    |    
T  28748028 a 28748028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 69 - 180
Target Start/End: Original strand, 16431554 - 16431665
Alignment:
Q  69 tgaaatgataataagtaaatacttataaaaactgatatgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacattttaatattag 168  Q
    |||||||| ||||||||| || ||  ||  ||||||||||||||||  ||||||||| || ||| ||||||| ||| ||| ||||  |||||||| ||||    
T  16431554 tgaaatgacaataagtaagtaatttgaaggactgatatgacaataagtaagtatattgaatgactaatatgacaatattagtgaattattttaatgttag 16431653  T
Q  169 agactaatttga 180  Q
    |||||| |||||    
T  16431654 agactattttga 16431665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 61 - 140
Target Start/End: Complemental strand, 23887708 - 23887629
Alignment:
Q  61 ataagaactgaaatgataataagtaaatacttataaaaactgatatgacaataaacaagtatattaaaggacaaatatga 140  Q
    |||||||  ||||||| ||||| ||| ||||||||| ||||||||||| ||||| ||| |||||| |||||| |||||||    
T  23887708 ataagaaaggaaatgacaataaataagtacttataagaactgatatgaaaataagcaattatattgaaggactaatatga 23887629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 125
Target Start/End: Complemental strand, 27789139 - 27789081
Alignment:
Q  67 actgaaatgataataagtaaatacttataaaaactgatatgacaataaacaagtatatt 125  Q
    |||||||||||||||||| ||||| |||||  ||||||||||||||||  |||||||||    
T  27789139 actgaaatgataataagtgaatacgtataaggactgatatgacaataagtaagtatatt 27789081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 198
Target Start/End: Original strand, 17848762 - 17848854
Alignment:
Q  106 tgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacattttaatattagagactaatttgactaatgaaatgcacaatc 198  Q
    |||||||||  |||||||| ||| ||| ||||||  ||| |||| |||  |||||||| ||| |||||| ||||||||| |||||||||||||    
T  17848762 tgacaataagtaagtatatcaaatgactaatatgtcaatattaacgaagtattttaatgttaaagactattttgactaacgaaatgcacaatc 17848854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 218
Target Start/End: Original strand, 28995429 - 28995581
Alignment:
Q  66 aactgaaatgataataagtaaatacttataaaaactgatatgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacattttaatat 165  Q
    ||||||||||| ||||||||| || |||| || | ||||||| ||||||  |||||| || || ||| || |||| ||| |||| |||  |||||||| |    
T  28995429 aactgaaatgagaataagtaagtaattatgaatattgatatgccaataagtaagtatgtttaaagactaacatgaaaatattaacgaagtattttaatgt 28995528  T
Q  166 tagagactaatttgactaatgaaatgcacaatcaaagactattttcaaatttc 218  Q
    |||| |||| ||||||||| ||| |  | ||||||| | |||||| |||||||    
T  28995529 tagaaactattttgactaacgaagtaaataatcaaatattattttaaaatttc 28995581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 66 - 149
Target Start/End: Complemental strand, 515938 - 515855
Alignment:
Q  66 aactgaaatgataataagtaaatacttataaaaactgatatgacaataaacaagtatattaaaggacaaatatgataatgttaa 149  Q
    |||||| |||| ||||||||| |||||||||  |||||||||| || ||||||||||| | | |||| ||||||| ||| ||||    
T  515938 aactgatatgacaataagtaagtacttataatgactgatatgataacaaacaagtataatgagggactaatatgacaatattaa 515855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 135 - 210
Target Start/End: Original strand, 7515596 - 7515671
Alignment:
Q  135 atatgataatgttaatgaaacattttaatattagagactaatttgactaatgaaatgcacaatcaaagactatttt 210  Q
    |||||||||| ||||||||||||||||||   ||||| || |||||||||   |||||| |||||| |||||||||    
T  7515596 atatgataatattaatgaaacattttaatgcaagagagtattttgactaagataatgcataatcaatgactatttt 7515671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 106 - 209
Target Start/End: Original strand, 21237273 - 21237376
Alignment:
Q  106 tgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacattttaatattagagactaatttgactaatgaaatgcacaatcaaagact 205  Q
    |||||||||  ||||||||| || | | ||||||| ||||||||||||  |||||||| ||||  | |||||||||||| |||||  ||||||| ||||     
T  21237273 tgacaataactaagtatattgaacggctaatatgacaatgttaatgaagtattttaatgttaggaattaatttgactaacgaaatatacaatcagagaca 21237372  T
Q  206 attt 209  Q
    ||||    
T  21237373 attt 21237376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 197
Target Start/End: Complemental strand, 7954873 - 7954811
Alignment:
Q  135 atatgataatgttaatgaaacattttaatattagagactaatttgactaatgaaatgcacaat 197  Q
    |||||||||||| |||||||||||||||||| | | |||| | ||||||| ||||| ||||||    
T  7954873 atatgataatgtcaatgaaacattttaatataaaaaactattatgactaacgaaatacacaat 7954811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 217
Target Start/End: Original strand, 4964252 - 4964333
Alignment:
Q  136 tatgataatgttaatgaaacattttaatattagagactaatttgactaatgaaatgcacaatcaaagactattttcaaattt 217  Q
    ||||||||| |||||||| ||||||||||| | | |||| |||||||||| || |||| ||| |  ||||||||| ||||||    
T  4964252 tatgataatattaatgaagcattttaatatcaaaaactattttgactaataaagtgcataattattgactattttaaaattt 4964333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 6e-22; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 69 - 222
Target Start/End: Original strand, 12403194 - 12403347
Alignment:
Q  69 tgaaatgataataagtaaatacttataaaaactgatatgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacattttaatattag 168  Q
    ||||||||||||||||||||| ||||||  | |||||||||||||     |||||||||| ||    ||| ||||| |||||||| |||| |||||| ||    
T  12403194 tgaaatgataataagtaaatatttataaggattgatatgacaatacgtgggtatattaaaagattggtatcataatattaatgaatcattctaatatcag 12403293  T
Q  169 agactaatttgactaatgaaatgcacaatcaaagactattttcaaatttcgatc 222  Q
     ||||| ||||| |||| ||||| |||||||||||||||||| |||||||||||    
T  12403294 ggactattttgagtaataaaatggacaatcaaagactattttaaaatttcgatc 12403347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 67 - 167
Target Start/End: Complemental strand, 26675214 - 26675115
Alignment:
Q  67 actgaaatgataataagtaaatacttataaaaactgatatgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacattttaatatt 166  Q
    |||||||||| ||||| ||||||||||||| |||||||||||||||||| ||||||||| ||||||  |||||| ||| ||||||||| ||||||| |||    
T  26675214 actgaaatgacaataaataaatacttataagaactgatatgacaataaataagtatattgaaggac-tatatgacaatattaatgaaatattttaacatt 26675116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 67 - 167
Target Start/End: Complemental strand, 26946822 - 26946723
Alignment:
Q  67 actgaaatgataataagtaaatacttataaaaactgatatgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacattttaatatt 166  Q
    |||||||||| ||||| ||||||||||||| |||||||||||||||||| ||||||||| ||||||  |||||| ||| ||||||||| ||||||| |||    
T  26946822 actgaaatgacaataaataaatacttataagaactgatatgacaataaataagtatattgaaggac-tatatgacaatattaatgaaatattttaacatt 26946724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 117 - 217
Target Start/End: Complemental strand, 23159190 - 23159090
Alignment:
Q  117 aagtatattaaaggacaaatatgataatgttaatgaaacattttaatattagagactaatttgactaatgaaatgcacaatcaaagactattttcaaatt 216  Q
    ||||| ||| ||||||||||||| |||| |||||||||||||| || || || ||||| ||| ||||| |||||||||||||||| |||||||| |||||    
T  23159190 aagtaaattgaaggacaaatatgttaatattaatgaaacatttcaacatcagggactatttttactaacgaaatgcacaatcaaatactattttaaaatt 23159091  T
Q  217 t 217  Q
    |    
T  23159090 t 23159090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 71 - 210
Target Start/End: Complemental strand, 27001323 - 27001184
Alignment:
Q  71 aaatgataataagtaaatacttataaaaactgatatgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacattttaatattagag 170  Q
    |||||| ||||| ||| || ||||||| ||||||||||||||||  ||||||||| | ||   ||||||| ||| ||||||||  ||||||| || | ||    
T  27001323 aaatgacaataattaagtatttataaagactgatatgacaataagtaagtatattgacggggtaatatgacaatattaatgaagtattttaacatcaaag 27001224  T
Q  171 actaatttgactaatgaaatgcacaatcaaagactatttt 210  Q
    |||| |||||||||  || |||||||||| ||||||||||    
T  27001223 actattttgactaacaaattgcacaatcatagactatttt 27001184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 96 - 221
Target Start/End: Original strand, 917082 - 917207
Alignment:
Q  96 aaaactgatatgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacattttaatattagagactaatttgactaatgaaatgcaca 195  Q
    |||| ||||||||||| ||| || |||||| || ||| ||||||| ||| ||||  ||| |||||| | | |||||||| |||||  ||| || || |||    
T  917082 aaaattgatatgacaaaaaataaatatattgaatgactaatatgacaatattaacaaaatattttattgtgagagactattttgataaataaagtgtaca 917181  T
Q  196 atcaaagactattttcaaatttcgat 221  Q
    ||||||||||||||| ||||||||||    
T  917182 atcaaagactattttaaaatttcgat 917207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 67 - 217
Target Start/End: Original strand, 6217537 - 6217688
Alignment:
Q  67 actgaaatgataataagtaaatacttataaaaactgatatgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacatttt-aatat 165  Q
    |||||| ||||| | ||||||||||||||| || ||||| |||| |||  |||||||||||||||| ||||||| |||  |||   || ||||| ||| |    
T  6217537 actgaattgatagttagtaaatacttataagaattgatacgacactaagtaagtatattaaaggactaatatgacaatactaacctaatattttaaatgt 6217636  T
Q  166 tagagactaatttgactaatgaaatgcacaatcaaagactattttcaaattt 217  Q
     | |||||| ||||||||| ||| |||| |||||  ||||||||| ||||||    
T  6217637 caaagactattttgactaacgaagtgcataatcatggactattttgaaattt 6217688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 103 - 182
Target Start/End: Complemental strand, 7314059 - 7313980
Alignment:
Q  103 atatgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacattttaatattagagactaatttgact 182  Q
    ||||||||||||| ||||||||||| |||| ||||||| ||| |||| |||| |||| ||||| || ||||| |||||||    
T  7314059 atatgacaataaataagtatattaagggaccaatatgacaatattaacgaaatatttaaatatgagggactattttgact 7313980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 65 - 140
Target Start/End: Original strand, 14460045 - 14460120
Alignment:
Q  65 gaactgaaatgataataagtaaatacttataaaaactgatatgacaataaacaagtatattaaaggacaaatatga 140  Q
    |||||||||||||| ||||||| ||  ||||| |||||||||||||||||  || |||||| |||||| |||||||    
T  14460045 gaactgaaatgatattaagtaagtatatataataactgatatgacaataagtaaatatattgaaggactaatatga 14460120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 181
Target Start/End: Complemental strand, 1041920 - 1041858
Alignment:
Q  119 gtatattaaaggacaaatatgataatgttaatgaaacattttaatattagagactaatttgac 181  Q
    |||||||||| ||| ||||||| ||||||||||||||||||||| |||||  |||| ||||||    
T  1041920 gtatattaaaagactaatatgacaatgttaatgaaacattttaacattagtaactattttgac 1041858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 201
Target Start/End: Complemental strand, 4658476 - 4658392
Alignment:
Q  117 aagtatattaaaggacaaatatgataatgttaatgaaacattttaatattagagactaatttgactaatgaaatgcacaatcaaa 201  Q
    |||||||||||| ||| ||||||||| | ||| || ||||||||||| | |||||||| ||||| ||| ||| || |||||||||    
T  4658476 aagtatattaaaagactaatatgatattattagtggaacattttaatctgagagactattttgattaaagaattgtacaatcaaa 4658392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 200
Target Start/End: Original strand, 37181239 - 37181343
Alignment:
Q  96 aaaactgatatgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacattttaatattagagactaatttgactaatgaaatgcaca 195  Q
    ||||||||||||||||| |  ||||||||||| | || ||||||| ||| |||| ||||||||||||   |||||| || |||||| || ||| ||||||    
T  37181239 aaaactgatatgacaattagtaagtatattaatgaaccaatatgacaatattaacgaaacattttaacgctagagattattttgaccaacgaagtgcaca 37181338  T
Q  196 atcaa 200  Q
     ||||    
T  37181339 gtcaa 37181343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 210
Target Start/End: Complemental strand, 22579392 - 22579319
Alignment:
Q  137 atgataatgttaatgaaacattttaatattagagactaatttgactaatgaaatgcacaatcaaagactatttt 210  Q
    |||| ||| |||| |||| ||| ||| ||||||||||| || |||||| ||| |||||||| ||||||||||||    
T  22579392 atgacaatattaacgaaatattctaacattagagactatttcgactaacgaagtgcacaattaaagactatttt 22579319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 125
Target Start/End: Complemental strand, 37269031 - 37268979
Alignment:
Q  73 atgataataagtaaatacttataaaaactgatatgacaataaacaagtatatt 125  Q
    ||||||| ||||||||||||||||| | | |||||| |||||| |||||||||    
T  37269031 atgataaaaagtaaatacttataaagattaatatgataataaataagtatatt 37268979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 210
Target Start/End: Complemental strand, 39194944 - 39194868
Alignment:
Q  134 aatatgataatgttaatgaaacattttaatattagagactaatttgactaatgaaatgcacaatcaaagactatttt 210  Q
    ||||||| ||| |||| |||||||||||||   || ||||| |||||||||  || ||||||||||| |||||||||    
T  39194944 aatatgacaatattaacgaaacattttaatggcagtgactattttgactaacaaagtgcacaatcaatgactatttt 39194868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 69 - 241
Target Start/End: Complemental strand, 33747478 - 33747305
Alignment:
Q  69 tgaaatgataataagtaaatacttataaaaactgatatgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacattttaatattag 168  Q
    |||||||| | ||||||| ||||||||| ||||||| | |||||||  |  || ||| || ||| ||||||| ||| |||||| | ||||||||||| ||    
T  33747478 tgaaatgacagtaagtaagtacttataagaactgatgttacaataagtatataaattgaacgactaatatgacaatattaatggagcattttaatatcag 33747379  T
Q  169 agactaatttgactaatgaaatgcacaatcaaagactattttcaaatttcgat-cattgaaagactattttgac 241  Q
    |||||| ||||||||| ||| |||| ||||||| ||| |||| |||||||||| |||||||  |||||| ||||    
T  33747378 agactattttgactaacgaagtgcagaatcaaatactgttttgaaatttcgatacattgaagaactattgtgac 33747305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 65 - 162
Target Start/End: Original strand, 34826955 - 34827052
Alignment:
Q  65 gaactgaaatgataataagtaaatacttataaaaactgatatgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacattttaa 162  Q
    |||| ||||||| ||||||||| |||||||||  ||||||||||||||||| ||||||||| || ||| ||||||| ||| |||| ||||||||||||    
T  34826955 gaaccgaaatgacaataagtaagtacttataagtactgatatgacaataaataagtatattgaatgactaatatgacaatattaacgaaacattttaa 34827052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 67 - 163
Target Start/End: Complemental strand, 6541215 - 6541119
Alignment:
Q  67 actgaaatgataataagtaaatacttataaaaactgatatgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacattttaat 163  Q
    |||||||||| ||||||||| || ||||||| ||||||||||||||||  ||||||||| |||||| ||||||| ||| |||| |||| ||||||||    
T  6541215 actgaaatgacaataagtaagtatttataaagactgatatgacaataagtaagtatattgaaggactaatatgacaatattaacgaaatattttaat 6541119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 71 - 217
Target Start/End: Original strand, 32743229 - 32743375
Alignment:
Q  71 aaatgataataagtaaatacttataaaaactgatatgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacattttaatattagag 170  Q
    |||||| ||||||||| ||| ||| || |||||||||||| |||  ||||||||| || ||  ||||| | ||| |||  |||| |||||||| | ||||    
T  32743229 aaatgacaataagtaagtacgtatcaagactgatatgacagtaagtaagtatattgaatgattaatataagaatattagcgaaatattttaatgtcagag 32743328  T
Q  171 actaatttgactaatgaaatgcacaatcaaagactattttcaaattt 217  Q
    | || ||||||||| |||||| ||||||||||| |||||| ||||||    
T  32743329 attattttgactaacgaaatgtacaatcaaagattattttaaaattt 32743375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 65 - 210
Target Start/End: Complemental strand, 26515283 - 26515139
Alignment:
Q  65 gaactgaaatgataataagtaaatacttataaaaactgatatgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacattttaata 164  Q
    |||||||||||| ||  ||||| |||||||||| | |||||| |||||||  ||||||||  |||||| ||||||| |||  |||| |||||||| |  |    
T  26515283 gaactgaaatgacaacgagtaagtacttataaagattgatataacaataattaagtatatcgaaggactaatatgacaat-ataattaaacatttcatca 26515185  T
Q  165 ttagagactaatttgactaatgaaatgcacaatcaaagactatttt 210  Q
    | |||||||| ||||||||||||||| |||||| |  |||||||||    
T  26515184 tcagagactattttgactaatgaaatacacaattagggactatttt 26515139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 61 - 217
Target Start/End: Original strand, 51273330 - 51273486
Alignment:
Q  61 ataagaactgaaatgataataagtaaatacttataaaaactgatatgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacatttt 160  Q
    ||||||||| |||||| ||||||||| |||||||||  |||  |||||||||||  || |||||| |  ||| ||||||| ||| ||||||||| | |||    
T  51273330 ataagaactaaaatgacaataagtaagtacttataaggacttgtatgacaataagtaaatatattgagtgactaatatgacaatattaatgaaaaaattt 51273429  T
Q  161 aatattagagactaatttgactaatgaaatgcacaatcaaagactattttcaaattt 217  Q
    ||||| |  ||||| |||||| ||  || ||||||||||  || |||||| ||||||    
T  51273430 aatatcaacgactattttgacaaaaaaattgcacaatcacggagtattttaaaattt 51273486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 106 - 209
Target Start/End: Original strand, 49880163 - 49880266
Alignment:
Q  106 tgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacattttaatattagagactaatttgactaatgaaatgcacaatcaaagact 205  Q
    |||||||||  ||||||||| || ||| ||||||| ||| | ||||||  |||||||| |||| ||||| ||||||||||||| || ||||||| ||||     
T  49880163 tgacaataagtaagtatattgaaagactaatatgacaatatcaatgaagtattttaatgttagggactattttgactaatgaagtgtacaatcagagaca 49880262  T
Q  206 attt 209  Q
    ||||    
T  49880263 attt 49880266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 184
Target Start/End: Complemental strand, 8984123 - 8984017
Alignment:
Q  78 aataagtaaatacttataaaaactgatatgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacattttaatattagagactaatt 177  Q
    |||| |||||||||| ||| |||  || |||||||||| |||||||||||  ||| ||| ||| ||| ||||  |||||||||||| | |||||||| ||    
T  8984123 aatacgtaaatacttttaagaacaaatgtgacaataaataagtatattaagagactaatgtgagaatattaacaaaacattttaatgtaagagactattt 8984024  T
Q  178 tgactaa 184  Q
    |||||||    
T  8984023 tgactaa 8984017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 236
Target Start/End: Original strand, 35684864 - 35684954
Alignment:
Q  147 taatgaaacattttaatattagagactaatttgactaatgaaatgcacaatcaaagactattttcaaatttcgat-cattgaaagactatt 236  Q
    |||||||||||||||| ||||  ||||| ||||||||| ||| ||||||||||  ||||||||| | |||| ||| ||||||| |||||||    
T  35684864 taatgaaacattttaacattaatgactattttgactaacgaactgcacaatcatggactattttgagattttgatacattgaaggactatt 35684954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 152 - 236
Target Start/End: Original strand, 34177465 - 34177550
Alignment:
Q  152 aaacattttaatattagagactaatttgactaatgaaatgcacaatcaaagactattttcaaatttc-gatcattgaaagactatt 236  Q
    |||||||||||| | |||||||| |||||||||   ||||||||||||  ||||||||| |||||||  ||||||||| |||||||    
T  34177465 aaacattttaatgtaagagactattttgactaacataatgcacaatcatggactattttgaaatttcaaatcattgaaggactatt 34177550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 146 - 199
Target Start/End: Original strand, 50155749 - 50155802
Alignment:
Q  146 ttaatgaaacattttaatattagagactaatttgactaatgaaatgcacaatca 199  Q
    |||||||||||||||||||| || ||||| ||||||||||||| || |||||||    
T  50155749 ttaatgaaacattttaatatcagtgactattttgactaatgaattgtacaatca 50155802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 163
Target Start/End: Original strand, 5043414 - 5043486
Alignment:
Q  91 ttataaaaactgatatgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacattttaat 163  Q
    ||||||||||||||||||||||||| ||||||||| || ||| ||||| | ||| ||||  ||| ||||||||    
T  5043414 ttataaaaactgatatgacaataaataagtatattgaatgaccaatataacaatattaacaaaatattttaat 5043486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 140
Target Start/End: Original strand, 35621466 - 35621524
Alignment:
Q  82 agtaaatacttataaaaactgatatgacaataaacaagtatattaaaggacaaatatga 140  Q
    ||||| ||||||| || |||||||||| |||||  |||||||||||||||| |||||||    
T  35621466 agtaattacttatgaagactgatatgaaaataagtaagtatattaaaggactaatatga 35621524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 159
Target Start/End: Original strand, 33747839 - 33747904
Alignment:
Q  94 taaaaactgatatgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacattt 159  Q
    |||| |||||||||| || ||| ||||||||| |||||  ||||||| ||| ||||||||||||||    
T  33747839 taaatactgatatgataagaaataagtatattgaaggattaatatgacaatattaatgaaacattt 33747904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 209
Target Start/End: Complemental strand, 9890681 - 9890589
Alignment:
Q  117 aagtatattaaaggacaaatatgataatgttaatgaaacattttaatattagagactaatttgactaatgaaatgcacaatcaaagactattt 209  Q
    ||||||||| |||||| ||||||| ||| |||| |||  ||| |||| |||  || || ||||||||| |||||| |||||||||||| ||||    
T  9890681 aagtatattgaaggactaatatgacaatattaacgaagtattctaatgttaaggattattttgactaacgaaatgtacaatcaaagacaattt 9890589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 71 - 127
Target Start/End: Original strand, 27900784 - 27900840
Alignment:
Q  71 aaatgataataagtaaatacttataaaaactgatatgacaataaacaagtatattaa 127  Q
    |||||| ||||||||| |||||||||  | ||||||||||||||| |||||| ||||    
T  27900784 aaatgacaataagtaagtacttataaggattgatatgacaataaataagtattttaa 27900840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 184
Target Start/End: Original strand, 36144966 - 36145062
Alignment:
Q  88 tacttataaaaactgatatgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacattttaatattagagactaatttgactaa 184  Q
    |||||||||  ||||||||||||||||  ||||||||| ||  || ||||||| ||| ||||| ||| ||||||| || |  ||||| |||||||||    
T  36144966 tacttataaggactgatatgacaataactaagtatattgaaaaactaatatgacaatattaataaaagattttaacatcatggactattttgactaa 36145062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 106 - 209
Target Start/End: Complemental strand, 20156 - 20053
Alignment:
Q  106 tgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacattttaatattagagactaatttgactaatgaaatgcacaatcaaagact 205  Q
    |||||||||| ||||||||| |||||| ||||||| ||| | ||||||  |||| ||| |||||||||| ||||||||||||| || ||||||| ||||     
T  20156 tgacaataaataagtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttagagactattttgactaatgaagtgtacaatcagagaca 20057  T
Q  206 attt 209  Q
    ||||    
T  20056 attt 20053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0284 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 106 - 198
Target Start/End: Complemental strand, 2539 - 2447
Alignment:
Q  106 tgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacattttaatattagagactaatttgactaatgaaatgcacaatc 198  Q
    |||||||||| ||||||||| |||||| ||||||| ||| | ||||||  |||| ||| |||| ||||| ||||||||||||| || ||||||    
T  2539 tgacaataaataagtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttagggactattttgactaatgaagtgtacaatc 2447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 236
Target Start/End: Complemental strand, 328972 - 328806
Alignment:
Q  72 aatgataa-taagtaaatacttataaaaactgatatgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacattttaatattagag 170  Q
    |||||||| |||||||||||||  ||| || ||||||| |||||  |||| |||| ||| || ||||||| ||| | ||  |||||||||||| |  |||    
T  328972 aatgataagtaagtaaatacttccaaagacagatatgataataagtaagtgtattgaagaactaatatgacaatatcaacaaaacattttaatgtcggag 328873  T
Q  171 actaatttgactaatgaaatgcacaatcaaagactattttcaaatttcgat-cattgaaagactatt 236  Q
    || | ||||||| |  || || || |||||||| |||||| |||||||||| |||||||||||||||    
T  328872 acgattttgactgacaaattgtaccatcaaagattattttaaaatttcgatacattgaaagactatt 328806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 71 - 184
Target Start/End: Original strand, 349095 - 349208
Alignment:
Q  71 aaatgataataagtaaatacttataaaaactgatatgacaataaacaagtatattaaaggacaaatatgataatgttaatgaaacattttaatattagag 170  Q
    |||||| ||||||||| ||| |||||  ||| ||||||||||||  |||| |||| ||| || || |||| ||| |||| |||| |||||||||| | ||    
T  349095 aaatgacaataagtaagtacgtataaggactaatatgacaataactaagtctattgaagaactaacatgacaatattaacgaaatattttaatatcaaag 349194  T
Q  171 actaatttgactaa 184  Q
    |||| |||||||||    
T  349195 actattttgactaa 349208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 110 - 209
Target Start/End: Original strand, 35029 - 35128
Alignment:
Q  110 aataaacaagtatattaaaggacaaatatgataatgttaatgaaacattttaatattagagactaatttgactaatgaaatgcacaatcaaagactattt 209  Q
    |||||| ||||||||| |||||| ||||||| ||| | ||||||  |||| ||| |||| ||||| ||||||||||||| || |||| || |||| ||||    
T  35029 aataaataagtatattgaaggactaatatgacaatatcaatgaagtatttgaatgttagggactattttgactaatgaagtgtacaaccagagacaattt 35128  T

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