View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16629_high_28 (Length: 384)
Name: NF16629_high_28
Description: NF16629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16629_high_28 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 19 - 348
Target Start/End: Original strand, 52411726 - 52412055
Alignment:
| Q |
19 |
cacagaatacataatctaattttggagatatcaggaagtcattaatggtttattcctgctgttcgcatcttgtattttctgnnnnnnnnactggttttgt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
52411726 |
cacagaatacataatctaattttggagatatcaggaagtcattaatggtttattcctgctgttcgcatcttgtattttctgttttttttactggttttgg |
52411825 |
T |
|
| Q |
119 |
tgtacagaagaataataaagtttcaaatttggcatgcttacaccttgaactttttgcgaaatgcaatattaaccattttgactgtcaaatttaaagtttt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52411826 |
tgtacagaagaataataaagtttcaaatttggcatgcttacaccttgaactttttgcgtaatgcaatattaaccattttgactgtcaaatttaaagtttt |
52411925 |
T |
|
| Q |
219 |
cattaagcaaatcaaagtcacataatataagctcagaccaaacacacaatgcataacaccaaaattctgtcagtcaccattatcactcaccaaaacctga |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52411926 |
cattaagcaaatcaaagtcacataatataagctcagaccaaacacacaatgcataacaccaaaattctgtcagtcaccattatcactcaccaaaacctga |
52412025 |
T |
|
| Q |
319 |
agaaaatcacaccaatttctcttcacagtg |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
52412026 |
agaaaatcacaccaatttctcttcacagtg |
52412055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University