View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16629_high_29 (Length: 366)
Name: NF16629_high_29
Description: NF16629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16629_high_29 |
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Alignment Details
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 14 - 304
Target Start/End: Complemental strand, 9946357 - 9946070
Alignment:
| Q |
14 |
ataatactcatttctaagttgactaaaacggtttagtagaattcactgttatgtttttgttataaatagacaatgataatttttattgatttgcatttgc |
113 |
Q |
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| T |
9946357 |
ataatactcatttctaagttgactaaaacggtttagtagaattcactgatatgtttttgttataaatagacaatgataatttttattgatttgcatttgc |
9946258 |
T |
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| Q |
114 |
acgtaccttttaacaaaatgatattgagggttagataggaagaatttagtgaataaaacttgaggatgcagagcagaatcgttgtgggtgaacaacatac |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
9946257 |
acgtaccttttaacaaaatgatattgagggttagataggaagaatttagtgaataaaacttgaggatgcagagcagaatcgttgtgggtg---aacatac |
9946161 |
T |
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| Q |
214 |
atatcatacattaagggtaaatggatagagctagcttgagggttttcaacagaactttgaggacagagattaaaatgcttctattaaatta |
304 |
Q |
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| T |
9946160 |
atatcatacattaagggtaaatggatagagctagcttgagggttttcaacagaactttgaggacagagattaaaatgcttctattaaatta |
9946070 |
T |
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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 25927729 - 25927666
Alignment:
| Q |
14 |
ataatactcatttctaagttgactaaaacggtttagtagaattcactgttatgtttttgttata |
77 |
Q |
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|||||| | |||||| | |||||||||| |||||||||| |||||||||||| |||||| |||| |
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| T |
25927729 |
ataatattaatttctcacttgactaaaatggtttagtaggattcactgttatatttttgatata |
25927666 |
T |
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