View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16629_high_3 (Length: 649)
Name: NF16629_high_3
Description: NF16629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16629_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 571; Significance: 0; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 571; E-Value: 0
Query Start/End: Original strand, 8 - 634
Target Start/End: Complemental strand, 28615702 - 28615073
Alignment:
| Q |
8 |
ccaagaatattgcgtctgctcgaaggaaagtggtaaagattgtatctgatagcttccatccttcacattatagatcccaaaccctaaatcttctggaaca |
107 |
Q |
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||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28615702 |
ccaagaaaattgtgtctgctcgaaggaaagtggtaaagattgtatctgatagcttccatccttcacattatagatcccaaaccctaaatcttctggaaca |
28615603 |
T |
|
| Q |
108 |
ctctcacagagaaaataaactgaatcnnnnnnnaacttggagaaacaagaggcagacacagaaaatgaattaccacaatatctgataaataaaatgttgt |
207 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28615602 |
ctctcacagagaaaataaactgaatctttttttaacttggagaaacaagaggcagacacagaaaatgaattaccacaatatctgataaataaaatgttgt |
28615503 |
T |
|
| Q |
208 |
ctcccaaactctcaagcctgttcatttgtacaagttttccactcttggtgtccagtttcaatttgtaaacgtcgagtccatacgaaagcttttcgatgtc |
307 |
Q |
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|||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28615502 |
ctcccaaactcttaagcatgttcatttgtacaagttttccactcttggtgtccagtttcaatttgtaaacgtcgagtccatacgaaagcttttcgatgtc |
28615403 |
T |
|
| Q |
308 |
gattagatatcttttcaccatccatatgtctccattcaatgatttcacaagatgagtttgtccagcataatcttgggctcgagcacaatattcagtgcta |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
28615402 |
gattagatatcttttcaccatccatatgtctccattcaatgatttcacaagatgagtttgtccagcataatcttgggctcgagcacgatattcagtgcta |
28615303 |
T |
|
| Q |
408 |
gttatcttctcatagtaagtaaaattagggtcatttgagcgatcaggg---ggagtagtgttgaacttgaaggattgaatggtgtctgagtgggtctcag |
504 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28615302 |
gttatcttctcatagtaagtaaaattagggtcatttgagcgatcagggggaggagtagtgttgaacttgaaggattgaatggtgtctgagtgggtctcag |
28615203 |
T |
|
| Q |
505 |
caactaacatgcctttataaaatacaacatcattgaaatgtaataaatttgtaactataggaatccaaaatggttggcttgctctttggaaagcaatatg |
604 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
28615202 |
caactaacatgcctttataaaatacaacatcattgaaatgtaataaatttgtaactataggaatccaaaatggttggtttgctctttggaaagcaatatg |
28615103 |
T |
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| Q |
605 |
gccaaagttgtaaatgacgacagcaacata |
634 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
28615102 |
gccaaagttgtaaatgacgacagcaacata |
28615073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 308 - 597
Target Start/End: Complemental strand, 28621958 - 28621669
Alignment:
| Q |
308 |
gattagatatcttttcaccatccatatgtctccattcaatgatttcacaagatgagtttgtccagcataatcttgggctcgagcacaatattcagtgcta |
407 |
Q |
| |
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||||||||||||| | |||||||||||||||||||||||||||||||||| || | | || ||| ||||| | || ||| || | | | ||| |
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| T |
28621958 |
gattagatatcttctaaccatccatatgtctccattcaatgatttcacaaaataaagaatttcattatagcattgggatggaacactatttctaatccta |
28621859 |
T |
|
| Q |
408 |
gttatcttctcatagtaagtaaaattagggtcatttgagcgatcagggggagtagtgttgaacttgaaggattgaatggtgtctgagtgggtctcagcaa |
507 |
Q |
| |
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| |||||||||||||||||||||||||||||||| |||| |||| |||| | ||||||||||||||||| ||||| |||| | | ||||||| |
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| T |
28621858 |
gctatcttctcatagtaagtaaaattagggtcatatgagtcatcacaaggaggattgttgaacttgaaggatataatggcgtctccttcactgtcagcaa |
28621759 |
T |
|
| Q |
508 |
ctaacatgcctttataaaatacaacatcattgaaatgtaataaatttgtaactataggaatccaaaatggttggcttgctctttggaaag |
597 |
Q |
| |
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|| || |||||| ||||||||||||||| ||| || ||| || || | || | ||||||||||||||||||||||||||| ||||| |
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| T |
28621758 |
ataccaagcctttgtaaaatacaacatcagtgatatcaaattgatgtgctaataaatgaatccaaaatggttggcttgctcttttgaaag |
28621669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 141 - 284
Target Start/End: Original strand, 28612140 - 28612280
Alignment:
| Q |
141 |
aacttggagaaacaagaggcagacacagaaaatgaattaccacaatatctgataaataaaatgttgtctcccaaactctcaagcctgttcatttgtacaa |
240 |
Q |
| |
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||||||||| ||||||||| | |||||||| ||||| |||| || || || |||||||||||||||| ||||||||||||| ||||||| ||| ||| |
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| T |
28612140 |
aacttggagtgacaagaggctggcacagaaattgaatcacca--at-tccgacaaataaaatgttgtcttccaaactctcaagtttgttcatctgttcaa |
28612236 |
T |
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| Q |
241 |
gttttccactcttggtgtccagtttcaatttgtaaacgtcgagt |
284 |
Q |
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|||||||||||| | ||||||| ||||||||| ||||||||| |
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| T |
28612237 |
gttttccactctggacatccagttccaatttgtacacgtcgagt |
28612280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 141 - 279
Target Start/End: Complemental strand, 29288546 - 29288408
Alignment:
| Q |
141 |
aacttggagaaacaagaggcagacacagaaaatgaattaccacaatatctgataaataaaatgttgtctcccaaactctcaagcctgttcatttgtacaa |
240 |
Q |
| |
|
|||||||||||| |||||| | |||||||| |||| |||| | || || |||||||||||||||| ||||||||||||| ||||||| ||| ||| |
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| T |
29288546 |
aacttggagaaagcagaggccggcacagaaatggaatcaccaacacttccgacaaataaaatgttgtcttccaaactctcaagtttgttcatctgttcaa |
29288447 |
T |
|
| Q |
241 |
gttttccactcttggtgtccagtttcaatttgtaaacgt |
279 |
Q |
| |
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|||||||||||| || ||||||| ||||||| |||||| |
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| T |
29288446 |
gttttccactctgggcatccagttccaatttgaaaacgt |
29288408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 95
Target Start/End: Complemental strand, 28617851 - 28617773
Alignment:
| Q |
16 |
attgcgtctgctcgaaggaaagtggtaaagattgtatctgatagcttccatccttcacattatagatcccaaaccctaaa |
95 |
Q |
| |
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||||| || ||| ||||||||| ||||||||| ||||| || |||||||||||||||||||||||||||| ||||||||| |
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| T |
28617851 |
attgcatccgcttgaaggaaagcggtaaagat-gtatccgacagcttccatccttcacattatagatcccgaaccctaaa |
28617773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 305 - 357
Target Start/End: Complemental strand, 29270558 - 29270506
Alignment:
| Q |
305 |
gtcgattagatatcttttcaccatccatatgtctccattcaatgatttcacaa |
357 |
Q |
| |
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|||||||| | ||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
29270558 |
gtcgattaaacatcttttcaccatccatgtgtctccagtcaatgatttcacaa |
29270506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 141 - 272
Target Start/End: Complemental strand, 29283107 - 29282976
Alignment:
| Q |
141 |
aacttggagaaacaagaggcagacacagaaaatgaattaccacaatatctgataaataaaatgttgtctcccaaactctcaagcctgttcatttgtacaa |
240 |
Q |
| |
|
|||||||||||| |||||| | |||||| | ||||| |||| | || || |||||||||| ||||| ||||||||||||| ||||||| ||| | | |
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| T |
29283107 |
aacttggagaaagcagaggctggcacagatattgaatcaccaacacttccgacaaataaaatgctgtcttccaaactctcaagtttgttcatgtgttcta |
29283008 |
T |
|
| Q |
241 |
gttttccactcttggtgtccagtttcaatttg |
272 |
Q |
| |
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|||||||||||| || ||||||| ||||||| |
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| T |
29283007 |
gttttccactctgggcatccagttccaatttg |
29282976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 198 - 248
Target Start/End: Complemental strand, 28623377 - 28623327
Alignment:
| Q |
198 |
aaaatgttgtctcccaaactctcaagcctgttcatttgtacaagttttcca |
248 |
Q |
| |
|
|||||||||||| ||||||||| ||| ||||||||||| ||||||||||| |
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|
| T |
28623377 |
aaaatgttgtcttccaaactcttaagtttgttcatttgttcaagttttcca |
28623327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 501 - 542
Target Start/End: Original strand, 28612497 - 28612538
Alignment:
| Q |
501 |
tcagcaactaacatgcctttataaaatacaacatcattgaaa |
542 |
Q |
| |
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||||||| || || |||||||||||||||||||||||||||| |
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|
| T |
28612497 |
tcagcaattagcaggcctttataaaatacaacatcattgaaa |
28612538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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