View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16629_high_32 (Length: 342)
Name: NF16629_high_32
Description: NF16629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16629_high_32 |
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Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 22 - 332
Target Start/End: Original strand, 11630908 - 11631218
Alignment:
| Q |
22 |
ttgtcttggaataattgccaatgcacacactgtctttgcagacaaagaacctagaaaagcaatggctgatccatgtgttgagcttgcaaagctattctca |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11630908 |
ttgtcttggaataattgccaatgcacacactgtctttgcagacaaagaacctggaaaagcaatggctgatccatgtgttgagcttgcaaagctattctca |
11631007 |
T |
|
| Q |
122 |
acagcagttgactttccaaaaacaggtatcccagcagaaatacctcgtcgtcttttccccacagaatatccagatttcatggagaagcctgacaaaccta |
221 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11631008 |
acagcagttgactttccaaaaaccggtatcccagcagaaatacctcgtggtcttttccccacagaatatccagatttcatggagaagcctgacaaaccta |
11631107 |
T |
|
| Q |
222 |
cctgcaaatcaaagaatgtaattggaaaactttttcgggaaattcaaagtatttcaacaaaggacggctctgttacatccttcacgttggaagtggctaa |
321 |
Q |
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|| |||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||| ||||| |||||||||||||| |
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| T |
11631108 |
tctacaaatcaaagaatgtaataggaaaactttttagggaaattcaaggtatttcaacaaaggacggctctattacatctttcacattggaagtggctaa |
11631207 |
T |
|
| Q |
322 |
agagtcctatg |
332 |
Q |
| |
|
||||||||||| |
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| T |
11631208 |
agagtcctatg |
11631218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 24 - 332
Target Start/End: Original strand, 11639672 - 11639980
Alignment:
| Q |
24 |
gtcttggaataattgccaatgcacacactgtctttgcagacaaagaacctagaaaagcaatggctgatccatgtgttgagcttgcaaagctattctcaac |
123 |
Q |
| |
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|||| ||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||| |||| |||||| | |||||||||||||||||||||| |
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| T |
11639672 |
gtctcggaataattgccaatgcacacacagtctttgcagataaagaacctgctaaagcaatgtctgagccatgtatcgagcttgcaaagctattctcaat |
11639771 |
T |
|
| Q |
124 |
agcagttgactttccaaaaacaggtatcccagcagaaatacctcgtcgtcttttccccacagaatatccagatttcatggagaagcctgacaaacctacc |
223 |
Q |
| |
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|||||||||||||||||| || ||||||||||| | ||||||||| |||||| ||| ||||||||||||||||||||||||| |||||||| | || |
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| T |
11639772 |
agcagttgactttccaaagactggtatcccagccgttatacctcgtgaacttttcgccaaagaatatccagatttcatggagaaggctgacaaaacaaca |
11639871 |
T |
|
| Q |
224 |
tgcaaatcaaagaatgtaattggaaaactttttcgggaaattcaaagtatttcaacaaaggacggctctgttacatccttcacgttggaagtggctaaag |
323 |
Q |
| |
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| ||||||| | |||||||| |||||||| ||| ||||||||||| | |||||||||||||||||||| ||||||||||||| |||||||||||||| |
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| T |
11639872 |
tacaaatcagataatgtaataggaaaactgtttagggaaattcaaggaatttcaacaaaggacggctccattacatccttcacactggaagtggctaaaa |
11639971 |
T |
|
| Q |
324 |
agtcctatg |
332 |
Q |
| |
|
|||| |||| |
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|
| T |
11639972 |
agtcatatg |
11639980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 24 - 332
Target Start/End: Complemental strand, 11675731 - 11675423
Alignment:
| Q |
24 |
gtcttggaataattgccaatgcacacactgtctttgcagacaaagaacctagaaaagcaatggctgatccatgtgttgagcttgcaaagctattctcaac |
123 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||| |||| |||||| |||| ||||||||||||||||||| |
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| T |
11675731 |
gtcttggaataatttccaatgcacacactgtctttgcagataaagaacctgctaaagcaatgtctgagccatgtattgaacttgcaaagctattctcaat |
11675632 |
T |
|
| Q |
124 |
agcagttgactttccaaaaacaggtatcccagcagaaatacctcgtcgtcttttccccacagaatatccagatttcatggagaagcctgacaaacctacc |
223 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||| ||||| | || ||||||| ||| |||||||||||| |||||||| |||||||||||| | ||| |
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| T |
11675631 |
agcagttgattttccaaaaaccggtatcccagcagttataccccctcatcttttcgccaaagaatatccagacttcatggaaaagcctgacaaaaccacc |
11675532 |
T |
|
| Q |
224 |
tgcaaatcaaagaatgtaattggaaaactttttcgggaaattcaaagtatttcaacaaaggacggctctgttacatccttcacgttggaagtggctaaag |
323 |
Q |
| |
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| |||||||||||||||||| |||||||||||| ||||||||||| |||||||||| ||| || ||| |||||||||| || | ||||||||||| | |
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| T |
11675531 |
tacaaatcaaagaatgtaataggaaaactttttagggaaattcaaggtatttcaactgagggtggttctcttacatcctttacacttgaagtggctaagg |
11675432 |
T |
|
| Q |
324 |
agtcctatg |
332 |
Q |
| |
|
|||| |||| |
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|
| T |
11675431 |
agtcatatg |
11675423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 24 - 279
Target Start/End: Complemental strand, 11683315 - 11683060
Alignment:
| Q |
24 |
gtcttggaataattgccaatgcacacactgtctttgcagacaaagaacctagaaaagcaatggctgatccatgtgttgagcttgcaaagctattctcaac |
123 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| || |||||| | |||||||||||||| |||||| |||| |||||||||||||||||| |
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|
| T |
11683315 |
gtcttggaataattgccaatgcacacattgtctttgcagataaggaacctggtaaagcaatggctgagccatgtattgaacttgcaaagctattctcagt |
11683216 |
T |
|
| Q |
124 |
agcagttgactttccaaaaacaggtatcccagcagaaatacctcgtcgtcttttccccacagaatatccagatttcatggagaagcctgacaaacctacc |
223 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||| ||||||| || |||||| ||| |||||||||||| |||||||| |||||||||||| | ||| |
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|
| T |
11683215 |
agcagttgattttccaaaaaccggtatcccagcagttatacctcctcatctttttgccaaagaatatccagacttcatggaaaagcctgacaaaaccacc |
11683116 |
T |
|
| Q |
224 |
tgcaaatcaaagaatgtaattggaaaactttttcgggaaattcaaagtatttcaac |
279 |
Q |
| |
|
| |||||||||||||||||| |||||||||||| ||||||||||| |||||||||| |
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|
| T |
11683115 |
tacaaatcaaagaatgtaataggaaaactttttagggaaattcaaggtatttcaac |
11683060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 184 - 327
Target Start/End: Complemental strand, 11683058 - 11682915
Alignment:
| Q |
184 |
agaatatccagatttcatggagaagcctgacaaacctacctgcaaatcaaagaatgtaattggaaaactttttcgggaaattcaaagtatttcaacaaag |
283 |
Q |
| |
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|||||||||||| |||||||| |||||||||||| | |||| |||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||| |
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| T |
11683058 |
agaatatccagacttcatggaaaagcctgacaaaaccacctacaaatcaaagaatgtaataggaaaactttttagggaaattcaaggtatttcaacaaat |
11682959 |
T |
|
| Q |
284 |
gacggctctgttacatccttcacgttggaagtggctaaagagtc |
327 |
Q |
| |
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||||| ||| ||||||||||||| | ||||||||||||||||| |
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| T |
11682958 |
gacggttctattacatccttcacacttgaagtggctaaagagtc |
11682915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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