View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16629_high_42 (Length: 286)
Name: NF16629_high_42
Description: NF16629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16629_high_42 |
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Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 33519646 - 33519366
Alignment:
| Q |
1 |
aaaagccttttattggacgagctgcttcgagagggcaagttgagaggtagcattccttggcatagagagccccgtagttattgatgccaatgaagtccag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33519646 |
aaaagccttttattggacgagctgcttcgagagggcaagtagagaggtagcaatccttggcatagagagccccgtagttattgatgccaatgaagtccag |
33519547 |
T |
|
| Q |
101 |
gctgcctcttaggaggctcttctccttagatgagaacctaggcaactggctcccaagaatagagcgcatatcagcagggtactcgccaaaaactagggga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33519546 |
gctgcctcttaggaggctcttctccttagatgagaacctaggcaactggctcccaagaatagagcgcatatcagcagggtactcgccaaaaactagggga |
33519447 |
T |
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| Q |
201 |
tctagtaaccttgccatcagaagagcggaaaaagttactaagaaagaacgatatagccattttcttttaattcatctcact |
281 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
33519446 |
tctagtaaccttgccatcagaagagcggaaaaagttactaagaaagaacgatagagccattttcttttaattcatgtcact |
33519366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 2 - 212
Target Start/End: Original strand, 33496311 - 33496521
Alignment:
| Q |
2 |
aaagccttttattggacgagctgcttcgagagggcaagttgagaggtagcattccttggcatagagagccccgtagttattgatgccaatgaagtccagg |
101 |
Q |
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||||||| |||||||||||||||| ||||| || ||||| ||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||| |
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| T |
33496311 |
aaagcctcttattggacgagctgcctcgagtggacaagtagagaggtagcaatccttggcatagagagctccatagttattgatgccaatgaagtccagg |
33496410 |
T |
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| Q |
102 |
ctgcctcttaggaggctcttctccttagatgagaacctaggcaactggctcccaagaatagagcgcatatcagcagggtactcgccaaaaactaggggat |
201 |
Q |
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|||||||||||||| ||||||||||| | |||| | | |||||| || ||||||||||||||||||| |||||||||||||| |||||||||||||||| |
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| T |
33496411 |
ctgcctcttaggagactcttctccttcgtagagatctttggcaaccggttcccaagaatagagcgcatctcagcagggtactcaccaaaaactaggggat |
33496510 |
T |
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| Q |
202 |
ctagtaacctt |
212 |
Q |
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||||||||||| |
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| T |
33496511 |
ctagtaacctt |
33496521 |
T |
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