View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16629_high_46 (Length: 267)

Name: NF16629_high_46
Description: NF16629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16629_high_46
NF16629_high_46
[»] chr8 (22 HSPs)
chr8 (21-249)||(28947268-28947496)
chr8 (21-140)||(43408672-43408790)
chr8 (53-225)||(36049525-36049692)
chr8 (61-140)||(2111013-2111092)
chr8 (82-224)||(8407504-8407643)
chr8 (62-154)||(35764709-35764801)
chr8 (62-153)||(925967-926058)
chr8 (63-224)||(29861400-29861558)
chr8 (80-223)||(5111518-5111659)
chr8 (90-140)||(4781257-4781307)
chr8 (56-130)||(37740756-37740830)
chr8 (94-140)||(14896452-14896498)
chr8 (51-163)||(3410259-3410369)
chr8 (96-163)||(6397168-6397235)
chr8 (79-129)||(17696151-17696201)
chr8 (24-138)||(38529593-38529706)
chr8 (108-137)||(10861092-10861121)
chr8 (63-140)||(12524305-12524382)
chr8 (78-163)||(13544014-13544098)
chr8 (78-163)||(13680375-13680459)
chr8 (173-222)||(35764655-35764704)
chr8 (89-163)||(30485079-30485152)
[»] chr4 (39 HSPs)
chr4 (21-249)||(34812625-34812852)
chr4 (77-224)||(44555579-44555723)
chr4 (63-140)||(39276511-39276588)
chr4 (53-140)||(2103179-2103266)
chr4 (120-216)||(44566985-44567077)
chr4 (58-129)||(52327445-52327516)
chr4 (53-163)||(4149028-4149138)
chr4 (56-154)||(30802412-30802509)
chr4 (54-224)||(21501676-21501851)
chr4 (56-224)||(47789355-47789520)
chr4 (53-140)||(28856413-28856500)
chr4 (62-140)||(6323841-6323919)
chr4 (124-223)||(31404605-31404700)
chr4 (62-131)||(466743-466813)
chr4 (75-137)||(53431404-53431466)
chr4 (125-224)||(30070216-30070313)
chr4 (64-140)||(37713451-37713527)
chr4 (69-141)||(39033633-39033705)
chr4 (86-141)||(22431461-22431516)
chr4 (63-138)||(41173915-41173990)
chr4 (53-123)||(8130274-8130344)
chr4 (86-136)||(17425592-17425642)
chr4 (75-224)||(24418112-24418256)
chr4 (94-140)||(25886119-25886165)
chr4 (54-140)||(46881003-46881089)
chr4 (59-224)||(20988675-20988831)
chr4 (105-153)||(50812927-50812975)
chr4 (86-141)||(17716348-17716403)
chr4 (107-214)||(41581314-41581416)
chr4 (86-141)||(56269503-56269558)
chr4 (56-150)||(1162346-1162440)
chr4 (75-232)||(37713245-37713398)
chr4 (56-101)||(30070331-30070376)
chr4 (75-136)||(42617745-42617805)
chr4 (74-139)||(52986362-52986427)
chr4 (75-163)||(12637716-12637804)
chr4 (64-120)||(27611812-27611868)
chr4 (192-232)||(37392968-37393008)
chr4 (88-136)||(50133287-50133335)
[»] chr5 (29 HSPs)
chr5 (56-224)||(2941985-2942151)
chr5 (56-204)||(31806577-31806722)
chr5 (62-224)||(6462239-6462398)
chr5 (69-223)||(17259525-17259676)
chr5 (63-225)||(6588396-6588555)
chr5 (53-140)||(43315523-43315609)
chr5 (63-136)||(31677296-31677369)
chr5 (94-224)||(1621439-1621567)
chr5 (56-140)||(34640177-34640261)
chr5 (53-140)||(22572690-22572778)
chr5 (21-140)||(17902786-17902904)
chr5 (51-140)||(4283259-4283342)
chr5 (158-216)||(5657064-5657122)
chr5 (57-139)||(28363539-28363621)
chr5 (69-203)||(41892767-41892898)
chr5 (62-136)||(17903107-17903181)
chr5 (74-132)||(32046916-32046974)
chr5 (108-207)||(32882804-32882898)
chr5 (54-124)||(36909604-36909674)
chr5 (29-138)||(8173405-8173513)
chr5 (117-222)||(7153700-7153803)
chr5 (57-101)||(31812167-31812211)
chr5 (107-154)||(11489018-11489065)
chr5 (173-224)||(31677204-31677255)
chr5 (62-140)||(1786868-1786946)
chr5 (65-135)||(9005331-9005401)
chr5 (63-140)||(1015041-1015118)
chr5 (69-224)||(22028767-22028917)
chr5 (56-92)||(16869847-16869883)
[»] scaffold0010 (1 HSPs)
scaffold0010 (53-222)||(166651-166824)
[»] chr1 (39 HSPs)
chr1 (56-224)||(23908807-23908973)
chr1 (56-218)||(31795336-31795495)
chr1 (56-137)||(21516493-21516574)
chr1 (63-224)||(31117590-31117746)
chr1 (63-140)||(3160987-3161064)
chr1 (56-129)||(32602949-32603022)
chr1 (62-137)||(32348407-32348482)
chr1 (67-135)||(35926513-35926583)
chr1 (70-140)||(35058683-35058753)
chr1 (62-127)||(5923865-5923930)
chr1 (62-163)||(11337228-11337329)
chr1 (62-163)||(11495247-11495348)
chr1 (56-163)||(28870456-28870563)
chr1 (56-154)||(15801273-15801369)
chr1 (63-140)||(1714030-1714107)
chr1 (71-140)||(3949637-3949706)
chr1 (62-203)||(7460189-7460328)
chr1 (60-135)||(35272476-35272552)
chr1 (132-221)||(5799165-5799251)
chr1 (111-224)||(22593547-22593657)
chr1 (66-163)||(1415860-1415958)
chr1 (75-163)||(30173402-30173490)
chr1 (73-163)||(15601980-15602069)
chr1 (142-216)||(33644649-33644722)
chr1 (105-197)||(15942390-15942479)
chr1 (56-140)||(32359316-32359401)
chr1 (86-141)||(34319215-34319270)
chr1 (173-224)||(35926612-35926663)
chr1 (50-92)||(20004346-20004388)
chr1 (64-130)||(20791808-20791874)
chr1 (46-140)||(38321948-38322042)
chr1 (86-140)||(39583648-39583702)
chr1 (75-136)||(4372804-4372865)
chr1 (51-92)||(7274725-7274766)
chr1 (95-140)||(40856631-40856676)
chr1 (75-140)||(40942418-40942483)
chr1 (50-122)||(4373243-4373315)
chr1 (94-130)||(30418497-30418533)
chr1 (24-140)||(36021204-36021318)
[»] chr3 (34 HSPs)
chr3 (56-224)||(32325994-32326164)
chr3 (36-162)||(9198013-9198138)
chr3 (56-154)||(18084864-18084961)
chr3 (56-224)||(33282296-33282460)
chr3 (29-224)||(37083906-37084096)
chr3 (77-223)||(30885-31029)
chr3 (70-158)||(32109872-32109960)
chr3 (63-225)||(20873056-20873217)
chr3 (56-162)||(36878892-36878997)
chr3 (62-140)||(38053582-38053660)
chr3 (104-160)||(25290161-25290217)
chr3 (58-154)||(32117944-32118040)
chr3 (62-208)||(33674390-33674533)
chr3 (69-223)||(13799886-13800038)
chr3 (56-224)||(32582513-32582676)
chr3 (69-160)||(1742789-1742880)
chr3 (73-132)||(11042063-11042121)
chr3 (57-140)||(22838259-22838342)
chr3 (54-133)||(32645876-32645955)
chr3 (53-112)||(35696637-35696696)
chr3 (46-117)||(44560335-44560406)
chr3 (24-101)||(45021310-45021381)
chr3 (73-137)||(3729863-3729927)
chr3 (62-203)||(22827749-22827885)
chr3 (86-141)||(32025669-32025724)
chr3 (57-136)||(37334634-37334713)
chr3 (103-154)||(41236131-41236181)
chr3 (86-141)||(42218282-42218337)
chr3 (30-125)||(50882420-50882514)
chr3 (62-135)||(9780485-9780558)
chr3 (57-140)||(36618086-36618166)
chr3 (78-139)||(38147962-38148023)
chr3 (63-131)||(35682648-35682716)
chr3 (73-129)||(42603847-42603903)
[»] chr2 (30 HSPs)
chr2 (56-223)||(42139444-42139607)
chr2 (69-224)||(27679146-27679299)
chr2 (117-207)||(38808816-38808903)
chr2 (58-207)||(44810135-44810281)
chr2 (51-140)||(5946548-5946637)
chr2 (53-136)||(30804358-30804441)
chr2 (56-220)||(33625608-33625770)
chr2 (79-223)||(14477601-14477741)
chr2 (73-140)||(21938037-21938104)
chr2 (62-163)||(8752584-8752684)
chr2 (56-224)||(44984180-44984351)
chr2 (57-136)||(15967966-15968045)
chr2 (73-140)||(28249823-28249890)
chr2 (56-150)||(13463512-13463606)
chr2 (176-224)||(15804464-15804512)
chr2 (69-152)||(38808735-38808818)
chr2 (57-163)||(9613733-9613839)
chr2 (56-138)||(31063099-31063181)
chr2 (53-138)||(1660205-1660290)
chr2 (59-140)||(5505703-5505783)
chr2 (56-140)||(40910052-40910139)
chr2 (62-138)||(4548994-4549070)
chr2 (106-162)||(18491943-18491999)
chr2 (107-154)||(963953-964000)
chr2 (56-131)||(5946376-5946451)
chr2 (53-140)||(12238211-12238298)
chr2 (77-140)||(21721918-21721981)
chr2 (69-140)||(27863868-27863939)
chr2 (73-134)||(33651167-33651228)
chr2 (69-224)||(39710488-39710643)
[»] chr6 (21 HSPs)
chr6 (53-225)||(9749791-9749959)
chr6 (29-163)||(29052673-29052805)
chr6 (88-223)||(2046043-2046175)
chr6 (60-140)||(34544422-34544502)
chr6 (72-135)||(2748288-2748351)
chr6 (69-206)||(5976707-5976842)
chr6 (106-224)||(9750243-9750355)
chr6 (73-122)||(2255918-2255967)
chr6 (73-154)||(25142249-25142330)
chr6 (50-141)||(8014403-8014494)
chr6 (80-154)||(9195625-9195700)
chr6 (75-137)||(724705-724767)
chr6 (176-225)||(32448150-32448199)
chr6 (86-141)||(27720057-27720112)
chr6 (168-222)||(4405557-4405611)
chr6 (115-153)||(9195838-9195876)
chr6 (62-136)||(32662303-32662377)
chr6 (75-140)||(1288436-1288501)
chr6 (62-139)||(13692520-13692596)
chr6 (74-114)||(7903054-7903094)
chr6 (53-141)||(32560596-32560684)
[»] chr7 (22 HSPs)
chr7 (53-216)||(2525216-2525374)
chr7 (69-223)||(24314160-24314311)
chr7 (81-208)||(87160-87286)
chr7 (119-224)||(2404654-2404756)
chr7 (66-140)||(15050966-15051040)
chr7 (56-154)||(7379537-7379634)
chr7 (56-154)||(31740567-31740664)
chr7 (66-140)||(43911097-43911171)
chr7 (94-224)||(44235370-44235497)
chr7 (56-140)||(13438306-13438390)
chr7 (56-140)||(28175428-28175512)
chr7 (63-121)||(15050624-15050682)
chr7 (106-140)||(36112697-36112731)
chr7 (86-139)||(24171477-24171530)
chr7 (111-224)||(42967801-42967914)
chr7 (76-140)||(25129807-25129871)
chr7 (74-158)||(34267389-34267472)
chr7 (105-140)||(883880-883915)
chr7 (105-140)||(1243209-1243244)
chr7 (88-163)||(28543545-28543620)
chr7 (50-140)||(24847248-24847337)
chr7 (59-99)||(12473022-12473062)
[»] scaffold0040 (1 HSPs)
scaffold0040 (56-224)||(49753-49917)
[»] scaffold0022 (1 HSPs)
scaffold0022 (63-139)||(84838-84914)
[»] scaffold0349 (1 HSPs)
scaffold0349 (86-141)||(9479-9534)
[»] scaffold0027 (1 HSPs)
scaffold0027 (73-140)||(8075-8141)
[»] scaffold0004 (1 HSPs)
scaffold0004 (68-133)||(338912-338977)


Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 21 - 249
Target Start/End: Original strand, 28947268 - 28947496
Alignment:
Q  21 ggtaaaaaatagtgaatagctgataaagctaacttatagcggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttat 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28947268 ggtaaaaaatagtgaatagctgataaagctaacttatagcggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttat 28947367  T
Q  121 aaatatgaaatgacataaaagtgatgtatttaatgaatatttactatttttgttcaattaagattacaatggtaaaattgagataaatgatgataagcta 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28947368 aaatatgaaatgacataaaagtgatgtatttaatgaatatttactatttttgttcaattaagattacaatggtaaaattgagataaatgatgataagcta 28947467  T
Q  221 taagtatttgaaaatgatatggtttaata 249  Q
    |||||||||||||||||||||||||||||    
T  28947468 taagtatttgaaaatgatatggtttaata 28947496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 21 - 140
Target Start/End: Complemental strand, 43408790 - 43408672
Alignment:
Q  21 ggtaaaaaatagtgaatagctgataaagctaacttatagcggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttat 120  Q
    ||||||||||||||||||||||||||  |||  ||||||||||||||||||| ||||||||||| ||||||| |||||||| ||  ||||||||||||||    
T  43408790 ggtaaaaaatagtgaatagctgataat-ctagtttatagcggataagctagccgattgaatttgtagtgtttggtaaaattagtaattgaactagcttat 43408692  T
Q  121 aaatatgaaatgacataaaa 140  Q
    ||||||||||||||| ||||    
T  43408691 aaatatgaaatgacaaaaaa 43408672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 53 - 225
Target Start/End: Original strand, 36049525 - 36049692
Alignment:
Q  53 cttatagcggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaagtgatgtattta 152  Q
    ||||||||  ||||| ||| |||||||||||  ||||||| |||||||| || ||| |||||  |||||||||||||||||||||||| |||| ||||||    
T  36049525 cttatagctaataagttagttgattgaatttatagtgttttgtaaaattagttgtttaactaaattataaatatgaaatgacataaaa-tgatatattta 36049623  T
Q  153 atgaatatttactatttttgttcaattaagattacaatggtaaaattgagataaatgatgataagctataagt 225  Q
    ||||||||| |  | |||| ||  |||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  36049624 atgaatattaa--acttttttt--attaagattacaatggtaaaattgagataaataatgataaactataagt 36049692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 61 - 140
Target Start/End: Complemental strand, 2111092 - 2111013
Alignment:
Q  61 ggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaa 140  Q
    ||||||| || ||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||    
T  2111092 ggataagataactgattgaatttgcagtgtttggtaaaattagcggttgaactagcttataaatatgaaatgacataaaa 2111013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 82 - 224
Target Start/End: Complemental strand, 8407643 - 8407504
Alignment:
Q  82 ttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaagtgatgtatttaatgaatatttactatttttgttcaattaa 181  Q
    ||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||  ||  | |||||| ||||||||  |||||| ||||| |||    
T  8407643 ttgcagtgtttggtaaaattagcggttgaactagcttataaatatgaaatgacataaaaaagagatgtttaattaatattta--attttt-ttcaagtaa 8407547  T
Q  182 gattacaatggtaaaattgagataaatgatgataagctataag 224  Q
    |||| ||  ||||||||||||| |||  |||||||||||||||    
T  8407546 gattccaggggtaaaattgagagaaaaaatgataagctataag 8407504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 62 - 154
Target Start/End: Complemental strand, 35764801 - 35764709
Alignment:
Q  62 gataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaagtgatgtatttaat 154  Q
    ||||| |||| |||||||||||||||||||| |||||||| | ||||||||||| |||||||||||||||||||||||| | || ||||||||    
T  35764801 gataatctagttgattgaatttgcagtgtttggtaaaattagcggttgaactagtttataaatatgaaatgacataaaaataatatatttaat 35764709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 62 - 153
Target Start/End: Complemental strand, 926058 - 925967
Alignment:
Q  62 gataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaagtgatgtatttaa 153  Q
    |||||||||||||||||||||||  |||||| |||||||  |||||||||| |||||||||||||||||||||  |||| |||| |||||||    
T  926058 gataagctagctgattgaatttgttgtgtttggtaaaatgagtggttgaaccagcttataaatatgaaatgacgcaaaaatgatatatttaa 925967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 63 - 224
Target Start/End: Complemental strand, 29861558 - 29861400
Alignment:
Q  63 ataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaagtga-tgtatttaatgaatatt 161  Q
    ||||||||| |||||||||||| ||||||| ||||||||    || ||| |||||| ||||||| ||||||  |||||   | | |||||||| ||||||    
T  29861558 ataagctagttgattgaatttgtagtgtttggtaaaattacctgtagaattagcttttaaatatcaaatgatgtaaaaaaaaatatatttaattaatatt 29861459  T
Q  162 tactatttttgttcaattaagattacaatggtaaaattgagataaatgatgataagctataag 224  Q
    ||  |||||| ||||||||||||||||| ||||||||||||| |||  |||||||||||||||    
T  29861458 ta--attttt-ttcaattaagattacaagggtaaaattgagagaaa-aatgataagctataag 29861400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 80 - 223
Target Start/End: Original strand, 5111518 - 5111659
Alignment:
Q  80 atttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaagtgatgtatttaatgaatatttactatttttgttcaatt 179  Q
    ||||| ||||||| |||||||  | | |||||||||||||| |||||||||||||||| ||  ||| |  ||||| ||||||||  | |||| |||||||    
T  5111518 atttgtagtgtttggtaaaataagcgcttgaactagcttattaatatgaaatgacatagaaacgatatggttaatcaatattta--agtttttttcaatt 5111615  T
Q  180 aagattacaatggtaaaattgagataaatgatgataagctataa 223  Q
    ||||| |||  |||||||| |||| |||  ||||||||||||||    
T  5111616 aagataacatgggtaaaatcgagagaaaaaatgataagctataa 5111659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 90 - 140
Target Start/End: Complemental strand, 4781307 - 4781257
Alignment:
Q  90 tttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaa 140  Q
    |||||||||||| |||||||||||| | |||||||||||||||||||||||    
T  4781307 tttagtaaaattagtggttgaactatcatataaatatgaaatgacataaaa 4781257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 56 - 130
Target Start/End: Complemental strand, 37740830 - 37740756
Alignment:
Q  56 atagcggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaa 130  Q
    |||||| |||||||||||||||||||||| |||||||  || |||| |  ||||||||||||| |||||||||||    
T  37740830 atagcgaataagctagctgattgaatttgtagtgtttgatacaattagctgttgaactagcttttaaatatgaaa 37740756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 94 - 140
Target Start/End: Complemental strand, 14896498 - 14896452
Alignment:
Q  94 gtaaaatttgtggttgaactagcttataaatatgaaatgacataaaa 140  Q
    |||||||| || |||||||||||||||||||||||||| ||||||||    
T  14896498 gtaaaattagttgttgaactagcttataaatatgaaatcacataaaa 14896452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 163
Target Start/End: Complemental strand, 3410369 - 3410259
Alignment:
Q  51 aacttatagcggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaagtgatgtatt 150  Q
    |||||||| ||||||| ||| |  |||| ||||| | |||| ||||||||| ||  ||||||||||| ||||||||||||| |||| ||| |||||| ||    
T  3410369 aacttataacggataaactaacaaattggatttgtaatgttcagtaaaattagttattgaactagctgataaatatgaaattacattaaa-tgatgt-tt 3410272  T
Q  151 taatgaatattta 163  Q
    |||| ||||||||    
T  3410271 taattaatattta 3410259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 96 - 163
Target Start/End: Original strand, 6397168 - 6397235
Alignment:
Q  96 aaaatttgtggttgaactagcttataaatatgaaatgacataaaagtgatgtatttaatgaatattta 163  Q
    ||||||||| ||| ||||| |||| ||||||| |||||||||||| |||| | |||||| ||||||||    
T  6397168 aaaatttgtagttaaactaacttaaaaatatggaatgacataaaaatgatatctttaattaatattta 6397235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 129
Target Start/End: Complemental strand, 17696201 - 17696151
Alignment:
Q  79 aatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaa 129  Q
    |||||| |||||||| ||||||| ||||||||||| | |||||||||||||    
T  17696201 aatttgtagtgtttaataaaattagtggttgaactggtttataaatatgaa 17696151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 138
Target Start/End: Original strand, 38529593 - 38529706
Alignment:
Q  24 aaaaaatagtgaatagctgataaagctaacttatagcggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaa 123  Q
    |||||||||  ||||||| |||| |||| |||||| | |||||||| |  ||||||||||| ||||||| ||| |||| |   |||||||| ||||||||    
T  38529593 aaaaaatagcaaatagcttataa-gctagcttatatcagataagctggtggattgaatttgtagtgtttggtagaattagcaattgaactaccttataaa 38529691  T
Q  124 tatgaaatgacataa 138  Q
    || ||| ||||||||    
T  38529692 taagaattgacataa 38529706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 137
Target Start/End: Complemental strand, 10861121 - 10861092
Alignment:
Q  108 tgaactagcttataaatatgaaatgacata 137  Q
    ||||||||||||||||||||||||||||||    
T  10861121 tgaactagcttataaatatgaaatgacata 10861092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 140
Target Start/End: Original strand, 12524305 - 12524382
Alignment:
Q  63 ataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaa 140  Q
    ||||||||| ||||||| |||| ||| |||  ||||||| |  |||||||||||||||||||| ||| |||| |||||    
T  12524305 ataagctagttgattgagtttgtagtatttgataaaattaggagttgaactagcttataaatacgaattgacgtaaaa 12524382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 78 - 163
Target Start/End: Original strand, 13544014 - 13544098
Alignment:
Q  78 gaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaagtgatgtatttaatgaatattta 163  Q
    ||||||| | |||||||||||||| | ||||||| | | |||||||| | ||||||||||||| |  |||||||||| ||||||||    
T  13544014 gaatttgtaatgtttagtaaaattagcggttgaagttgtttataaatttaaaatgacataaaa-tagtgtatttaattaatattta 13544098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 78 - 163
Target Start/End: Complemental strand, 13680459 - 13680375
Alignment:
Q  78 gaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaagtgatgtatttaatgaatattta 163  Q
    ||||||| | |||||||||||||| | ||||||| | | |||||||| | ||||||||||||| |  |||||||||| ||||||||    
T  13680459 gaatttgtaatgtttagtaaaattagcggttgaagttgtttataaatttaaaatgacataaaa-tagtgtatttaattaatattta 13680375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 222
Target Start/End: Complemental strand, 35764704 - 35764655
Alignment:
Q  173 ttcaattaagattacaatggtaaaattgagataaatgatgataagctata 222  Q
    |||||||| || ||||| ||||||||||| |||||| |||||||||||||    
T  35764704 ttcaattatgaatacaagggtaaaattgaaataaataatgataagctata 35764655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 163
Target Start/End: Original strand, 30485079 - 30485152
Alignment:
Q  89 gtttagtaaaatttgtggttgaactagcttat-aaatatgaaatgacataaaagtgatgtatttaatgaatattta 163  Q
    |||||||||||||   |||||||||| ||||| ||||||||||||| ||||||  ||| |||||||| ||||||||    
T  30485079 gtttagtaaaattaacggttgaactaacttataaaatatgaaatgatataaaa--gatatatttaattaatattta 30485152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 21 - 249
Target Start/End: Original strand, 34812625 - 34812852
Alignment:
Q  21 ggtaaaaaatagtgaatagctgataaagctaacttatagcggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttat 120  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34812625 ggtaaaaaatagtgaatagctgataa-gctaacttatagcggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttat 34812723  T
Q  121 aaatatgaaatgacataaaagtgatgtatttaatgaatatttactatttttgttcaattaagattacaatggtaaaattgagataaatgatgataagcta 220  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||    
T  34812724 aaatatgaaatgacataaaagtgatgtatttaatgaatatttgctatttttgttcaattaagattacaatggtaaaattgagataaacgatgataaccta 34812823  T
Q  221 taagtatttgaaaatgatatggtttaata 249  Q
    |||||||||||||||||||||||||||||    
T  34812824 taagtatttgaaaatgatatggtttaata 34812852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 77 - 224
Target Start/End: Original strand, 44555579 - 44555723
Alignment:
Q  77 tgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaagtgatgtatttaatgaatatttactatttttgttca 176  Q
    ||||| || ||||||| |||||||| | |||| ||||| |||||||||||||||||||||||||||||| |||||||||| |||   | | |||| ||||    
T  44555579 tgaatctgtagtgtttggtaaaattagcggttaaactaccttataaatatgaaatgacataaaagtgatatatttaatgattat---cgaatttttttca 44555675  T
Q  177 attaagattacaatggtaaaattgagataaatgatgataagctataag 224  Q
    |||||||||| ||  |||||||||||||||||||||||||||||||||    
T  44555676 attaagattaaaagagtaaaattgagataaatgatgataagctataag 44555723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 63 - 140
Target Start/End: Complemental strand, 39276588 - 39276511
Alignment:
Q  63 ataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaa 140  Q
    |||| ||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||| | |||||||||||||    
T  39276588 ataacctagctgattgaatttgtagtgtttggtaaaattagtggttgaactagcttataaatcttaaatgacataaaa 39276511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 53 - 140
Target Start/End: Original strand, 2103179 - 2103266
Alignment:
Q  53 cttatagcggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaa 140  Q
    |||||||| |||||||||||| |||||||||| ||||||| ||||||||  ||||||||| | ||||||||||| |||||||||||||    
T  2103179 cttatagcagataagctagcttattgaatttgtagtgtttggtaaaattaatggttgaacaaacttataaatataaaatgacataaaa 2103266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 120 - 216
Target Start/End: Complemental strand, 44567077 - 44566985
Alignment:
Q  120 taaatatgaaatgacataaaagtgatgtatttaatgaatatttactatttttgttcaattaagattacaatggtaaaattgagataaatgatgataa 216  Q
    ||||||||||||||||||||| ||||||||||||||||||||||  |||||| |||| ||||||||| || | |||||||||||| |||||||||||    
T  44567077 taaatatgaaatgacataaaaatgatgtatttaatgaatattta--attttt-ttcagttaagattataaggataaaattgagat-aatgatgataa 44566985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 52327516 - 52327445
Alignment:
Q  58 agcggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaa 129  Q
    ||||||||||||||||| ||||||||| ||||||| |||||||| |  ||||||||||||||||||||||||    
T  52327516 agcggataagctagctggttgaatttgtagtgtttggtaaaattagcagttgaactagcttataaatatgaa 52327445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 53 - 163
Target Start/End: Complemental strand, 4149138 - 4149028
Alignment:
Q  53 cttatagcggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaagtgatgtattta 152  Q
    ||||||| |||||| ||| | ||||||||||||||||||| ||||||||  ||||||| |||  |||||||||||| |||||||||||| |||   ||||    
T  4149138 cttatagtggataaactaaccgattgaatttgcagtgtttggtaaaattactggttgagctaatttataaatatgagatgacataaaagagatacgttta 4149039  T
Q  153 atgaatattta 163  Q
    || ||||||||    
T  4149038 attaatattta 4149028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 56 - 154
Target Start/End: Complemental strand, 30802509 - 30802412
Alignment:
Q  56 atagcggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaagtgatgtatttaat 154  Q
    |||||||||||| ||||| |||||||||| ||||||| ||||||||   | ||||| || ||||||||||||||||||||||||| |||| ||||||||    
T  30802509 atagcggataagttagcttattgaatttgtagtgtttggtaaaattac-gattgaattaacttataaatatgaaatgacataaaactgatatatttaat 30802412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 54 - 224
Target Start/End: Complemental strand, 21501851 - 21501676
Alignment:
Q  54 ttatagcggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaagtgatgtatttaa 153  Q
    ||||||||||||| |||||||||| |||| | ||||||| ||| |||| | |||| ||||||||||||| |||||||||| | |||   ||| |||||||    
T  21501851 ttatagcggataaactagctgattaaattcgtagtgtttggtagaattagcggttaaactagcttataagtatgaaatgatacaaataagatatatttaa 21501752  T
Q  154 tgaatattta------ctatttttgttcaattaagattacaatggtaaaattgagataaatgatgataagctataag 224  Q
    | ||||||||       ||||||| |||||||||| |||||| || ||||||| ||||||  || ||||||||||||    
T  21501751 ttaatatttaatatatatattttttttcaattaaggttacaaggggaaaattgggataaa-aattataagctataag 21501676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 56 - 224
Target Start/End: Original strand, 47789355 - 47789520
Alignment:
Q  56 atagcggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaa-gtgatgtatttaat 154  Q
    ||||||||||||||| |||||||| |||| ||||||| |||||||| | ||||||| | |||| |||||| |||||||| |||||  |  || |||||||    
T  47789355 atagcggataagctaactgattgattttgtagtgtttggtaaaattagcggttgaagttgcttctaaatacgaaatgacctaaaatattgtgcatttaat 47789454  T
Q  155 gaatatttactatttttgttcaattaagattacaatggtaaaattgagataaatgatgataagctataag 224  Q
     ||||||||    |||  ||||||||||||| ||  ||| |||| |||||||||  ||||||||||||||    
T  47789455 taatattta----tttctttcaattaagattgcaggggttaaatggagataaatagtgataagctataag 47789520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 53 - 140
Target Start/End: Complemental strand, 28856500 - 28856413
Alignment:
Q  53 cttatagcggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaa 140  Q
    |||||| |||||||| ||| |||||||||||||||||||||  | |||| || || ||||||||||||||||||| ||||||| ||||    
T  28856500 cttatatcggataagatagttgattgaatttgcagtgtttaacagaattagttgtggaactagcttataaatatgtaatgacaaaaaa 28856413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 62 - 140
Target Start/End: Original strand, 6323841 - 6323919
Alignment:
Q  62 gataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaa 140  Q
    ||||| |||| |||||||||| | ||||||| |||||||| |||| |||||| ||| ||||||||||||||||||||||    
T  6323841 gataaactagttgattgaattcgtagtgttttgtaaaattagtggctgaacttgctgataaatatgaaatgacataaaa 6323919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 124 - 223
Target Start/End: Complemental strand, 31404700 - 31404605
Alignment:
Q  124 tatgaaatgacataaaagtgatgtatttaatgaatatttactatttttgttcaattaagattacaatggtaaaattgagataaatgatgataagctataa 223  Q
    |||| |||||||||||| |||| ||||||| ||||||| |  ||||||  |||||||||||||||| | ||||||||||||||||||| ||||| |||||    
T  31404700 tatgcaatgacataaaaatgatatatttaaagaatattaa--attttt--tcaattaagattacaaggataaaattgagataaatgattataagttataa 31404605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 62 - 131
Target Start/End: Complemental strand, 466813 - 466743
Alignment:
Q  62 gataagctagctgattgaatttgcagtgttta-gtaaaatttgtggttgaactagcttataaatatgaaat 131  Q
    |||||||||| |||||||||||| |||||||  ||||| || ||||||||||| |||||||||||||||||    
T  466813 gataagctagttgattgaatttgaagtgtttttgtaaatttagtggttgaacttgcttataaatatgaaat 466743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 75 - 137
Target Start/End: Original strand, 53431404 - 53431466
Alignment:
Q  75 attgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacata 137  Q
    |||||||||||| ||||| |||||||| || |||||||||  |||||||||||||||||||||    
T  53431404 attgaatttgcaatgtttcgtaaaattagtcgttgaactaatttataaatatgaaatgacata 53431466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 125 - 224
Target Start/End: Complemental strand, 30070313 - 30070216
Alignment:
Q  125 atgaaatgacataaaagtgatgtatttaatgaatatttactatttttgttcaattaagattacaatggtaaaattgagataaatgatgataagctataag 224  Q
    ||||||| |||||||| |||| |||||||| ||||||||  ||| || ||||||||||||| ||  | |||||||||||| ||| ||||||||| |||||    
T  30070313 atgaaatcacataaaaatgatatatttaattaatattta--attgtttttcaattaagatttcatggataaaattgagatcaataatgataagccataag 30070216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 64 - 140
Target Start/End: Complemental strand, 37713527 - 37713451
Alignment:
Q  64 taagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaa 140  Q
    |||||||||  |||||||||| | ||||  |||||||| || |  ||||||||||||||||||||||||||||||||    
T  37713527 taagctagcaaattgaatttgtaatgttgggtaaaattagttgcggaactagcttataaatatgaaatgacataaaa 37713451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 69 - 141
Target Start/End: Complemental strand, 39033705 - 39033633
Alignment:
Q  69 tagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaag 141  Q
    |||||||||||||||| |||||||  |||||||   |||| ||||| |||| |||||||||||||||||||||    
T  39033705 tagctgattgaatttgtagtgtttgataaaattatcggttaaactaacttaaaaatatgaaatgacataaaag 39033633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 141
Target Start/End: Complemental strand, 22431516 - 22431461
Alignment:
Q  86 agtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaag 141  Q
    ||||||| |||||||| |||||| ||||| ||||||||||| ||||||||||||||    
T  22431516 agtgtttggtaaaattagtggttcaactaacttataaatataaaatgacataaaag 22431461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 138
Target Start/End: Complemental strand, 41173990 - 41173915
Alignment:
Q  63 ataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataa 138  Q
    ||||| ||| |||||||||||| | ||||| ||||||||   | |||||||||||| |||||||||||||||||||    
T  41173990 ataagttagttgattgaatttgtattgtttggtaaaattatcgattgaactagcttgtaaatatgaaatgacataa 41173915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 53 - 123
Target Start/End: Original strand, 8130274 - 8130344
Alignment:
Q  53 cttatagcggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaa 123  Q
    |||||||||||||||||||||||||||||||| ||| |||  ||||  | |  ||||||||||||||||||    
T  8130274 cttatagcggataagctagctgattgaatttgtagtatttgataaagctagcagttgaactagcttataaa 8130344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 86 - 136
Target Start/End: Original strand, 17425592 - 17425642
Alignment:
Q  86 agtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacat 136  Q
    ||||||| |||||||| ||||||||| || |||||||||||||||||||||    
T  17425592 agtgtttggtaaaattagtggttgaagtaacttataaatatgaaatgacat 17425642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 75 - 224
Target Start/End: Original strand, 24418112 - 24418256
Alignment:
Q  75 attgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaagtg-atgtatttaatgaatatttactatttttgt 173  Q
    |||||||||| ||||||| ||||| || || ||| || ||||||||||||||||||||||||||||  | | | ||||||| ||||||||     ||| |    
T  24418112 attgaatttgtagtgtttggtaaa-ttagttgttcaagtagcttataaatatgaaatgacataaaaaagtaagcatttaattaatattta-----ttttt 24418205  T
Q  174 tcaattaagattacaatggtaaaattgagataaatgatgataagctataag 224  Q
    | |||||||||| ||  ||||||||  |||||||  |||||||||||||||    
T  24418206 taaattaagattgcaggggtaaaataaagataaaaaatgataagctataag 24418256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 94 - 140
Target Start/End: Complemental strand, 25886165 - 25886119
Alignment:
Q  94 gtaaaatttgtggttgaactagcttataaatatgaaatgacataaaa 140  Q
    ||||||||  |||||||||||||||||| ||||||||||||||||||    
T  25886165 gtaaaattaatggttgaactagcttatagatatgaaatgacataaaa 25886119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 54 - 140
Target Start/End: Complemental strand, 46881089 - 46881003
Alignment:
Q  54 ttatagcggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaa 140  Q
    |||||||| ||||||||| ||||| |||||  |||||||| |||||||   || ||||||| ||||||||||| |||||||| ||||    
T  46881089 ttatagcgaataagctagttgattaaatttatagtgtttaataaaattaacggctgaactaacttataaatataaaatgacaaaaaa 46881003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 224
Target Start/End: Original strand, 20988675 - 20988831
Alignment:
Q  59 gcggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaagtgatgtatttaatgaat 158  Q
    |||||||| ||| |||||||||||| | |||| | || |||| || | |||||||| ||||||||||| ||||||| || ||  ||| |||||||| |||    
T  20988675 gcggataaactaactgattgaatttacggtgtctggtgaaatctgcgattgaactaacttataaatataaaatgacgtataaaagatatatttaattaat 20988774  T
Q  159 atttactatttttgttcaattaagattacaatggtaaaattgagataaatgatgataagctataag 224  Q
    ||||    ||||     ||||||||||| |  | |||||||||||||||  |||||||||||||||    
T  20988775 attt----tttt-----aattaagattaaagggttaaaattgagataaaaaatgataagctataag 20988831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 153
Target Start/End: Complemental strand, 50812975 - 50812927
Alignment:
Q  105 ggttgaactagcttataaatatgaaatgacataaaagtgatgtatttaa 153  Q
    |||||||||| ||||||||||| ||||||||||||||| || |||||||    
T  50812975 ggttgaactatcttataaatataaaatgacataaaagtaatatatttaa 50812927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 86 - 141
Target Start/End: Complemental strand, 17716403 - 17716348
Alignment:
Q  86 agtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaag 141  Q
    ||||||| |||||||| |||||| ||||| ||||||||| | ||||||||||||||    
T  17716403 agtgtttggtaaaattagtggttcaactaacttataaatgtaaaatgacataaaag 17716348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 214
Target Start/End: Complemental strand, 41581416 - 41581314
Alignment:
Q  107 ttgaactagcttataaatatgaaatgacataaaagtgatgtatttaatgaatatttactatttttgttcaattaagattacaatggtaaaattgagataa 206  Q
    ||||| |||||||||| ||| ||||||||||||| | || |||||||| ||||||||     ||| ||||||||||||   | | |||||||||||||||    
T  41581416 ttgaattagcttataagtataaaatgacataaaaataatatatttaatcaatattta-----ttttttcaattaagatcgtagttgtaaaattgagataa 41581322  T
Q  207 atgatgat 214  Q
    || |||||    
T  41581321 ataatgat 41581314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 86 - 141
Target Start/End: Original strand, 56269503 - 56269558
Alignment:
Q  86 agtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaag 141  Q
    |||||||||||||||| | |||| ||||||||||||||  | ||||||||||||||    
T  56269503 agtgtttagtaaaattagcggttcaactagcttataaacgtaaaatgacataaaag 56269558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 150
Target Start/End: Complemental strand, 1162440 - 1162346
Alignment:
Q  56 atagcggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaagtgatgtatt 150  Q
    ||||||||||| ||||||||||||||||| | | ||| ||||||||  | |||  |||| ||||||| ||| ||||| ||||||| |||| ||||    
T  1162440 atagcggataatctagctgattgaatttgtaatatttggtaaaattaatcgttagactatcttataattataaaatgccataaaaatgatatatt 1162346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 232
Target Start/End: Complemental strand, 37713398 - 37713245
Alignment:
Q  75 attgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaagtgatgtatttaatgaatatttactatttttgtt 174  Q
    |||||||||| | ||||  |||||||| || |  ||||||||||||||||||||||||||| ||||   ||  |||| || |||||   |||||||| ||    
T  37713398 attgaatttgtaatgttgggtaaaattagttgcggaactagcttataaatatgaaatgacaaaaaa--tatacatttgattaatat---ctattttt-tt 37713305  T
Q  175 caattaagattacaatggtaaaattgaga-taaatgatgataagctataag-tatttgaa 232  Q
    |||||||||| |||  |||||||||||||  |||  ||||||||||||||| ||||||||    
T  37713304 caattaagatcacaggggtaaaattgagagaaaaaaatgataagctataagctatttgaa 37713245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 56 - 101
Target Start/End: Complemental strand, 30070376 - 30070331
Alignment:
Q  56 atagcggataagctagctgattgaatttgcagtgtttagtaaaatt 101  Q
    |||| ||||||||||||| |||||||||| ||||||| ||||||||    
T  30070376 atagtggataagctagctaattgaatttgtagtgtttggtaaaatt 30070331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 136
Target Start/End: Complemental strand, 42617805 - 42617745
Alignment:
Q  75 attgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacat 136  Q
    |||||||||| ||||||||||||| ||   ||||||||||  ||||||||||||||||||||    
T  42617805 attgaatttgtagtgtttagtaaa-ttaacggttgaactaatttataaatatgaaatgacat 42617745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 74 - 139
Target Start/End: Original strand, 52986362 - 52986427
Alignment:
Q  74 gattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaa 139  Q
    |||| |||||| ||||| | |||||||| | ||||||| |||||| ||||||||||||||| ||||    
T  52986362 gattaaatttgtagtgtatggtaaaattagcggttgaagtagcttctaaatatgaaatgacctaaa 52986427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 163
Target Start/End: Complemental strand, 12637804 - 12637716
Alignment:
Q  75 attgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaagtgatgtatttaatgaatattta 163  Q
    |||||||| | | ||||| |||||||| |  ||| |||| ||||||||||||||||||||  |||| |||| || ||||| ||||||||    
T  12637804 attgaattagtaatgtttggtaaaattagctgtttaacttgcttataaatatgaaatgactaaaaaatgatatagttaattaatattta 12637716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 120
Target Start/End: Original strand, 27611812 - 27611868
Alignment:
Q  64 taagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttat 120  Q
    |||||||| |||||||||||| ||||||| |||||||| |  ||||||||| |||||    
T  27611812 taagctagttgattgaatttgtagtgtttggtaaaattagcagttgaactaacttat 27611868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 232
Target Start/End: Original strand, 37392968 - 37393008
Alignment:
Q  192 gtaaaattgagataaatgatgataagctataagtatttgaa 232  Q
    ||||||||||||||||| ||||||||||||| ||| |||||    
T  37392968 gtaaaattgagataaataatgataagctatatgtacttgaa 37393008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 136
Target Start/End: Complemental strand, 50133335 - 50133287
Alignment:
Q  88 tgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacat 136  Q
    ||||| |||||||| |  ||||||||||||||||||||| |||||||||    
T  50133335 tgtttggtaaaattagatgttgaactagcttataaatatcaaatgacat 50133287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 106; Significance: 4e-53; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 56 - 224
Target Start/End: Complemental strand, 2942151 - 2941985
Alignment:
Q  56 atagcggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaagtgatgtatttaatg 155  Q
    |||||||||||||||| || ||||||||| || |||| |||||||| |||||||||||| ||||||||||| |||||||||||||||||| |||||||||    
T  2942151 atagcggataagctagttggttgaatttgtagggtttggtaaaattagtggttgaactaacttataaatataaaatgacataaaagtgatatatttaatg 2942052  T
Q  156 aatatttactatttttgttcaattaagattacaatggtaaaattgagataaatgatgataagctataag 224  Q
    ||||||||  |||||| ||||||||||||||||| ||||||||||||||||| ||||||||||| ||||    
T  2942051 aatattta--attttttttcaattaagattacaagggtaaaattgagataaaggatgataagctctaag 2941985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 56 - 204
Target Start/End: Original strand, 31806577 - 31806722
Alignment:
Q  56 atagcggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaagtgatgtatttaatg 155  Q
    ||||||||||||||||| ||||||||||| | ||||| ||||||||   | |||||||| |||||||||||||||||||||||||||||| |||||||||    
T  31806577 atagcggataagctagcagattgaatttgtattgtttggtaaaattaaggattgaactatcttataaatatgaaatgacataaaagtgatatatttaatg 31806676  T
Q  156 aatatttactatttttgttcaattaagattacaatggtaaaattgagat 204  Q
    ||||||||  |||| | ||||||| |||||||||| |||||||||||||    
T  31806677 aatattta--atttgttttcaattgagattacaat-gtaaaattgagat 31806722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 62 - 224
Target Start/End: Original strand, 6462239 - 6462398
Alignment:
Q  62 gataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaagtgatgtatttaatgaatatt 161  Q
    ||||||||||||||||||||||| |||||||||||||||| | || | |  ||| ||||||||||||||||||| | || || | |||||||| ||||||    
T  6462239 gataagctagctgattgaatttgtagtgtttagtaaaattagcggctcat-taggttataaatatgaaatgacagacaaatgctatatttaattaatatt 6462337  T
Q  162 tactatttttgttcaattaagattacaatggtaaaattgagataaatgatgataagctataag 224  Q
    || | |||||  ||||| |||||| ||  |||||||||||||||||| |||||||||||||||    
T  6462338 tagttttttt--tcaatcaagattgcaggggtaaaattgagataaataatgataagctataag 6462398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 69 - 223
Target Start/End: Complemental strand, 17259676 - 17259525
Alignment:
Q  69 tagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaagtgatgtatttaatgaatatttactatt 168  Q
    ||||||||||||||||||||| ||||||||||| | |||||||||||||||||| |||||||||||||||||  ||| |||||||| |||| |||  |||    
T  17259676 tagctgattgaatttgcagtggttagtaaaattagcggttgaactagcttataagtatgaaatgacataaaaaagatatatttaattaatactta--att 17259579  T
Q  169 tttgttcaattaagattacaatggtaaaattgagataaatgatgataagctataa 223  Q
    ||| ||||||||||  |||||  ||||| ||||||| ||  |||||||| |||||    
T  17259578 ttt-ttcaattaaggctacaagtgtaaatttgagatgaaaaatgataagttataa 17259525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 63 - 225
Target Start/End: Complemental strand, 6588555 - 6588396
Alignment:
Q  63 ataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaagtgatgtatttaatgaatattt 162  Q
    ||||| |||||| ||||||||| | ||||   |||||||   || ||||||| ||||||| ||||||||||||| |||||||| ||||||||||||||||    
T  6588555 ataagttagctggttgaatttgaattgttggataaaattaacggatgaactaacttataa-tatgaaatgacattaaagtgatatatttaatgaatattt 6588457  T
Q  163 actatttttgttcaattaagattacaatggtaaaattgagataaatgatgataagctataagt 225  Q
    | |  |||| |  ||||||||||||||  ||||||||||||||||| ||||||| ||||||||    
T  6588456 atttatttttt--aattaagattacaagagtaaaattgagataaattatgataaactataagt 6588396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 53 - 140
Target Start/End: Original strand, 43315523 - 43315609
Alignment:
Q  53 cttatagcggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaa 140  Q
    ||||||||||||| ||||| |||||||||||| |||||| |  |||||| |||||||||||||||||||||||||||||| |||||||    
T  43315523 cttatagcggata-gctagttgattgaatttgtagtgttgatcaaaattagtggttgaactagcttataaatatgaaatgtcataaaa 43315609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 63 - 136
Target Start/End: Complemental strand, 31677369 - 31677296
Alignment:
Q  63 ataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacat 136  Q
    ||||||||||||||||||||| |||||||| |||||| | | ||||||||||||||| ||||||||||||||||    
T  31677369 ataagctagctgattgaatttacagtgtttggtaaaactagcggttgaactagcttacaaatatgaaatgacat 31677296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 94 - 224
Target Start/End: Original strand, 1621439 - 1621567
Alignment:
Q  94 gtaaaatttgtggttgaactagcttataaatatgaaatgacataaaagtgatgtat--ttaatgaatatttactatttttgttcaattaagattacaatg 191  Q
    |||||||| | ||||||| ||||||||||||||||||||||||||||   ||||||   |||| ||||||||    |||| ||||||||||||| ||| |    
T  1621439 gtaaaattagcggttgaagtagcttataaatatgaaatgacataaaaaaaatgtatacataattaatattta----tttttttcaattaagattgcaagg 1621534  T
Q  192 gtaaaattgagataaatgatgataagctataag 224  Q
    ||||||||||||||||   ||||||||||||||    
T  1621535 gtaaaattgagataaaaactgataagctataag 1621567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 56 - 140
Target Start/End: Complemental strand, 34640261 - 34640177
Alignment:
Q  56 atagcggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaa 140  Q
    |||||||||||||||||| |||||||||| | ||||| |||||||| ||||||    ||||||||||||||||||||||||||||    
T  34640261 atagcggataagctagcttattgaatttgtaatgtttggtaaaattagtggttattgtagcttataaatatgaaatgacataaaa 34640177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 53 - 140
Target Start/End: Complemental strand, 22572778 - 22572690
Alignment:
Q  53 cttatagcggataagctagctgattgaatttgcagtgtttag-taaaatttgtggttgaactagcttataaatatgaaatgacataaaa 140  Q
    ||||||||||||||  |||| |||||||||||||  |||| | ||||||| | | ||||||||||||||||||||||||||||||||||    
T  22572778 cttatagcggataaattagccgattgaatttgcaacgttttgataaaattagagattgaactagcttataaatatgaaatgacataaaa 22572690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 140
Target Start/End: Complemental strand, 17902904 - 17902786
Alignment:
Q  21 ggtaaaaaatagtgaatagctgataaagctaacttatagcggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttat 120  Q
    |||||||||||| |  || ||||||| |||| ||||||| |||||| |||| ||||| |||||| ||||||| |||||| | |  |||||||||||||||    
T  17902904 ggtaaaaaatagcgcttatctgataa-gctagcttatagaggataaactagttgattaaatttgtagtgtttggtaaaactagcagttgaactagcttat 17902806  T
Q  121 aaatatgaaatgacataaaa 140  Q
    ||||||| | ||||||||||    
T  17902805 aaatatgtattgacataaaa 17902786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 51 - 140
Target Start/End: Complemental strand, 4283342 - 4283259
Alignment:
Q  51 aacttatagcggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaa 140  Q
    ||||||| |||||||||||||||||||||||||| |||||||  ||      | |||||||||||||||| |||||||||| ||||||||    
T  4283342 aacttatggcggataagctagctgattgaatttgtagtgtttgata------gcggttgaactagcttatgaatatgaaataacataaaa 4283259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 158 - 216
Target Start/End: Original strand, 5657064 - 5657122
Alignment:
Q  158 tatttactatttttgttcaattaagattacaatggtaaaattgagataaatgatgataa 216  Q
    |||||||  |||||||||||||||||| ||||||||||||||||||||||  |||||||    
T  5657064 tatttacattttttgttcaattaagataacaatggtaaaattgagataaaaaatgataa 5657122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 57 - 139
Target Start/End: Complemental strand, 28363621 - 28363539
Alignment:
Q  57 tagcggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaa 139  Q
    ||||||| || ||| ||||||||||||| ||||||| |||| ||| |  |||||||||| |||||| ||||||||||||||||    
T  28363621 tagcggagaaactatctgattgaatttgtagtgtttggtaatattagctgttgaactagtttataagtatgaaatgacataaa 28363539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 203
Target Start/End: Original strand, 41892767 - 41892898
Alignment:
Q  69 tagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaagtgatgta-tttaatgaatatttactat 167  Q
    |||||||||||||||| ||||||| ||| ||||   |||| ||||||||||||||||||||||  |||||||   || || |||||| ||||||||  ||    
T  41892767 tagctgattgaatttgtagtgtttggtataattaacggttaaactagcttataaatatgaaataccataaaaaatatatattttaattaatattta--at 41892864  T
Q  168 ttttgttcaattaagattacaatggtaaaattgaga 203  Q
    |||  || |||||||||||||  |||||||||||||    
T  41892865 ttt--ttgaattaagattacaggggtaaaattgaga 41892898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 62 - 136
Target Start/End: Original strand, 17903107 - 17903181
Alignment:
Q  62 gataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacat 136  Q
    ||||| |||| ||||||||| ||| |||||| |||||||| |||||||||||| ||||||||  ||||| |||||    
T  17903107 gataaactagttgattgaatgtgccgtgtttggtaaaattagtggttgaactaacttataaacttgaaaagacat 17903181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 74 - 132
Target Start/End: Complemental strand, 32046974 - 32046916
Alignment:
Q  74 gattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatg 132  Q
    ||||||||||| ||||||| |||| ||| | |||||||||||||| |||||||||||||    
T  32046974 gattgaatttggagtgtttggtaatattagcggttgaactagcttttaaatatgaaatg 32046916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 108 - 207
Target Start/End: Complemental strand, 32882898 - 32882804
Alignment:
Q  108 tgaactagcttataaatatgaaatgacataaaagtgatgtatttaatgaatatttactatttttgttcaattaagattacaatggtaaaattgagataaa 207  Q
    |||| ||||||||||||||||||||||||||||  | | || ||||| ||||||||    |||| ||||||||||||| ||  |||||||||||||||||    
T  32882898 tgaagtagcttataaatatgaaatgacataaaaagggtata-ttaattaatattta----tttttttcaattaagattgcaggggtaaaattgagataaa 32882804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 54 - 124
Target Start/End: Complemental strand, 36909674 - 36909604
Alignment:
Q  54 ttatagcggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaat 124  Q
    ||||||||||||||||||   |||||||||| |||||||  ||||||| | ||||||||||||| ||||||    
T  36909674 ttatagcggataagctagtgaattgaatttgaagtgtttgataaaattggcggttgaactagctgataaat 36909604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 138
Target Start/End: Complemental strand, 8173513 - 8173405
Alignment:
Q  29 atagtgaatagctgataaagctaacttatagcggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatga 128  Q
    ||||||||||||| |||| |||| |||| || ||||||||| |||  ||||||||| ||  |||  ||||||| | || ||||||| | |||||||||||    
T  8173513 atagtgaatagcttataa-gctagcttaaagtggataagcttgctatttgaatttgtagcttttgataaaattagcggatgaactaacctataaatatga 8173415  T
Q  129 aatgacataa 138  Q
    ||||||||||    
T  8173414 aatgacataa 8173405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 222
Target Start/End: Original strand, 7153700 - 7153803
Alignment:
Q  117 ttataaatatgaaatgacataaaagtg-atgtatttaatgaatatttactatttttgttcaattaagattacaatggtaaaattgagataaatgatgata 215  Q
    ||||||||||||||||||||||||    |||| |||||| |||||||| |||||||   ||||||| ||||||  | | |||||||||||||| |||| |    
T  7153700 ttataaatatgaaatgacataaaaaaatatgtttttaattaatatttagtattttt---caattaatattacagggatgaaattgagataaataatgaga 7153796  T
Q  216 agctata 222  Q
    |||||||    
T  7153797 agctata 7153803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 31812211 - 31812167
Alignment:
Q  57 tagcggataagctagctgattgaatttgcagtgtttagtaaaatt 101  Q
    ||||| |||||||||||||||||||||| ||||||| ||||||||    
T  31812211 tagcgaataagctagctgattgaatttgtagtgtttggtaaaatt 31812167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 154
Target Start/End: Complemental strand, 11489065 - 11489018
Alignment:
Q  107 ttgaactagcttataaatatgaaatgacataaaagtgatgtatttaat 154  Q
    |||||||| ||||||||||| ||||||||||||| |||| ||||||||    
T  11489065 ttgaactatcttataaatataaaatgacataaaactgatatatttaat 11489018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 31677255 - 31677204
Alignment:
Q  173 ttcaattaagattacaatggtaaaattgagataaatgatgataagctataag 224  Q
    |||||||||||||| |  |||||||||||||||||  |||||||||||||||    
T  31677255 ttcaattaagattagaggggtaaaattgagataaacaatgataagctataag 31677204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 140
Target Start/End: Original strand, 1786868 - 1786946
Alignment:
Q  62 gataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaa 140  Q
    ||||| |||||||||| | |||| ||||||| | |||||   ||||||||||||   ||||||||||||||||||||||    
T  1786868 gataaactagctgattaagtttgtagtgtttggcaaaatcaatggttgaactagtcgataaatatgaaatgacataaaa 1786946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 135
Target Start/End: Complemental strand, 9005401 - 9005331
Alignment:
Q  65 aagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgaca 135  Q
    |||||| ||||||||||||| ||||||||||| ||||    |||||| ||||||| || ||||||||||||    
T  9005401 aagctaactgattgaatttgtagtgtttagtacaattaacagttgaagtagcttaaaagtatgaaatgaca 9005331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 140
Target Start/End: Complemental strand, 1015118 - 1015041
Alignment:
Q  63 ataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaa 140  Q
    |||||||| |||||| ||||||  ||||||  |||||||  || ||||| ||||| ||| ||||||||||||||||||    
T  1015118 ataagctaactgattaaatttgttgtgtttgataaaattaatgtttgaagtagctcatagatatgaaatgacataaaa 1015041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 69 - 224
Target Start/End: Complemental strand, 22028917 - 22028767
Alignment:
Q  69 tagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaagtgatgtatttaatgaatatttactatt 168  Q
    |||| ||||||||||  ||||||| |||||||  || ||||||||||||||||| ||||||||| ||| ||   ||| |||| ||| ||||||||  |||    
T  22028917 tagcggattgaatttatagtgtttcgtaaaata-gtcgttgaactagcttataagtatgaaatggcatgaataagatatattcaattaatattta--att 22028821  T
Q  169 tttgttcaattaagattacaatggtaaaattgagataaatgatgataagctataag 224  Q
    ||  ||| ||||||  ||||| ||||||| |||||||||  ||| |||| ||||||    
T  22028820 tt--ttctattaaggctacaaaggtaaaactgagataaaaaatgttaagttataag 22028767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 92
Target Start/End: Original strand, 16869847 - 16869883
Alignment:
Q  56 atagcggataagctagctgattgaatttgcagtgttt 92  Q
    |||||||||||||||  ||||||||||||||||||||    
T  16869847 atagcggataagctatttgattgaatttgcagtgttt 16869883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 53 - 222
Target Start/End: Complemental strand, 166824 - 166651
Alignment:
Q  53 cttatagcggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaagtgatgtattta 152  Q
    ||||||||  |||||||||||||||||||||| ||||||| |||||||| | ||||||||||||||||||||||||||||||||| || |||| ||||||    
T  166824 cttatagcaaataagctagctgattgaatttgtagtgtttggtaaaattagcggttgaactagcttataaatatgaaatgacatagaaatgatatattta 166725  T
Q  153 atgaatattta----ctatttttgttcaattaagattacaatggtaaaattgagataaatgatgataagctata 222  Q
    |||||| ||||     ||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  166724 atgaatgtttaatttttattttttttcaattaagattacaagggtaaaatagagataaatgatgataagctata 166651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 39)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 56 - 224
Target Start/End: Original strand, 23908807 - 23908973
Alignment:
Q  56 atagcggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaagtgatgtatttaatg 155  Q
    |||||| |||||||| | ||| ||||||| | ||||| || ||||| |||||||||||||||||||||||||||||||||||||| |||| ||| |||||    
T  23908807 atagcgaataagctaaccgatcgaatttgtaatgtttggtgaaattagtggttgaactagcttataaatatgaaatgacataaaaatgatatatctaatg 23908906  T
Q  156 aatatttactatttttgttcaattaagattacaatggtaaaattgagataaatgatgataagctataag 224  Q
    ||||||||  |||||| | |||||||||||| |   ||||||||||||||||| |||||||||| ||||    
T  23908907 aatattta--atttttttccaattaagattataggcgtaaaattgagataaataatgataagctttaag 23908973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 56 - 218
Target Start/End: Original strand, 31795336 - 31795495
Alignment:
Q  56 atagcggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaagtgatgtatttaatg 155  Q
    ||||||||||| ||  || |||||||||| ||||||| |||||| |   ||||||||||||||||||||||||||  ||||  ||||||| |||||||||    
T  31795336 atagcggataaactgactaattgaatttgtagtgtttggtaaaactaacggttgaactagcttataaatatgaaacaacatggaagtgatatatttaatg 31795435  T
Q  156 aatatttactatttttgttcaattaagattacaatggtaaaattgagataaatgatgataagc 218  Q
    |||||||  | ||||||   ||||||||||| |  |||||| ||||||||||| |||||||||    
T  31795436 aatatttcatttttttg---aattaagattataggggtaaacttgagataaataatgataagc 31795495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 56 - 137
Target Start/End: Original strand, 21516493 - 21516574
Alignment:
Q  56 atagcggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacata 137  Q
    |||| ||||||||||||||||||||||||  |||||| |||||||| ||||||||| |||||| ||||||||||||||||||    
T  21516493 atagtggataagctagctgattgaatttgttgtgtttggtaaaattagtggttgaaatagcttttaaatatgaaatgacata 21516574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 63 - 224
Target Start/End: Original strand, 31117590 - 31117746
Alignment:
Q  63 ataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaagtgatgtatttaatgaatattt 162  Q
    |||||||||||||||||||||| |||||||  ||||||| | | ||||| |||| |||||||||||||||||| |||| || | |||||||| |||||||    
T  31117590 ataagctagctgattgaatttgtagtgtttgataaaattagcgattgaaatagcatataaatatgaaatgacaaaaaaatg-tatatttaattaatattt 31117688  T
Q  163 actatttttgttcaattaagattacaatggtaaaattgagataaatgatgataagctataag 224  Q
    |    |||| |||||||||||||  |  |||||||||||||||||   ||||| ||||||||    
T  31117689 a----tttttttcaattaagattgtaggggtaaaattgagataaaaattgataggctataag 31117746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 63 - 140
Target Start/End: Complemental strand, 3161064 - 3160987
Alignment:
Q  63 ataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaa 140  Q
    |||||||||||||||||||||| ||||||| ||||||||   | |||||||||| |||||||||||||||||||||||    
T  3161064 ataagctagctgattgaatttgtagtgtttggtaaaattaacgtttgaactagcatataaatatgaaatgacataaaa 3160987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 56 - 129
Target Start/End: Complemental strand, 32603022 - 32602949
Alignment:
Q  56 atagcggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaa 129  Q
    |||||| ||||  |||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||    
T  32603022 atagcgaataaattagctgattgaatttgtagtgtttagtaaaattagtggttgaagtagcttataaatatgaa 32602949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 62 - 137
Target Start/End: Complemental strand, 32348482 - 32348407
Alignment:
Q  62 gataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacata 137  Q
    |||||||||| |||||||||||| ||||||| |||||||| | |||||| ||||||||||||| ||||||||||||    
T  32348482 gataagctagttgattgaatttgtagtgtttggtaaaattagcggttgagctagcttataaatttgaaatgacata 32348407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 67 - 135
Target Start/End: Original strand, 35926513 - 35926583
Alignment:
Q  67 gctagctgattgaatttg--cagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgaca 135  Q
    ||||||||||||||||||  |||||||| |||||||| |||||||||||||||||||| ||||||||||||    
T  35926513 gctagctgattgaatttgtacagtgtttggtaaaattagtggttgaactagcttataagtatgaaatgaca 35926583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 70 - 140
Target Start/End: Complemental strand, 35058753 - 35058683
Alignment:
Q  70 agctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaa 140  Q
    |||||||| |||||| ||||||| |||||||| | |||||||||| |||||||||||||||||||||||||    
T  35058753 agctgattaaatttgtagtgtttggtaaaattagcggttgaactaccttataaatatgaaatgacataaaa 35058683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 62 - 127
Target Start/End: Complemental strand, 5923930 - 5923865
Alignment:
Q  62 gataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatg 127  Q
    ||||||||||||||||||||||  ||||||| ||||||||  ||||||||||||||||||||||||    
T  5923930 gataagctagctgattgaatttttagtgtttggtaaaattaatggttgaactagcttataaatatg 5923865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 62 - 163
Target Start/End: Original strand, 11337228 - 11337329
Alignment:
Q  62 gataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaagtgatgtatttaatgaatatt 161  Q
    ||||| |||||  |||||||||||||||||| ||||||||||  |||||||||| |||| |||| |||||||||||||| |||| | |||||  ||||||    
T  11337228 gataaactagccaattgaatttgcagtgtttggtaaaatttgcagttgaactagtttattaatacgaaatgacataaaaatgatatttttaagtaatatt 11337327  T
Q  162 ta 163  Q
    ||    
T  11337328 ta 11337329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 62 - 163
Target Start/End: Original strand, 11495247 - 11495348
Alignment:
Q  62 gataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaagtgatgtatttaatgaatatt 161  Q
    ||||| |||||  |||||||||||||||||| ||||||||||  |||||||||| |||| |||| |||||||||||||| |||| | |||||  ||||||    
T  11495247 gataaactagccaattgaatttgcagtgtttggtaaaatttgcagttgaactagtttattaatacgaaatgacataaaaatgatatttttaagtaatatt 11495346  T
Q  162 ta 163  Q
    ||    
T  11495347 ta 11495348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 56 - 163
Target Start/End: Original strand, 28870456 - 28870563
Alignment:
Q  56 atagcggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaagtgatgtatttaatg 155  Q
    |||||||||||||||| | |||||||||  ||||||| ||||||||    |||||||||||||||||| ||||||| ||||||||  ||| | || ||||    
T  28870456 atagcggataagctagtttattgaatttttagtgtttggtaaaattaacagttgaactagcttataaaaatgaaattacataaaaaagatatgttcaatg 28870555  T
Q  156 aatattta 163  Q
    ||||||||    
T  28870556 aatattta 28870563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 56 - 154
Target Start/End: Complemental strand, 15801369 - 15801273
Alignment:
Q  56 atagcggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaagtgatgtatttaat 154  Q
    |||| ||||||| |||||||||||||||||| ||||| ||||||||   | ||||| || ||||||||||||||||||||||||| |||| ||||||||    
T  15801369 atagtggataagttagctgattgaatttgcaatgtttggtaaaattac-gattgaa-taacttataaatatgaaatgacataaaactgatatatttaat 15801273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 63 - 140
Target Start/End: Original strand, 1714030 - 1714107
Alignment:
Q  63 ataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaa 140  Q
    |||||||| ||||||||||||| ||||||| ||||||||    |||||| ||| ||||||||||||||||||||||||    
T  1714030 ataagctaactgattgaatttgtagtgtttggtaaaattaaccgttgaagtagtttataaatatgaaatgacataaaa 1714107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 71 - 140
Target Start/End: Original strand, 3949637 - 3949706
Alignment:
Q  71 gctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaa 140  Q
    |||||||||||||| ||||||| |||||||| | | ||||||||  ||||||||||||||||||||||||    
T  3949637 gctgattgaatttgtagtgtttggtaaaattagcgtttgaactaatttataaatatgaaatgacataaaa 3949706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 62 - 203
Target Start/End: Complemental strand, 7460328 - 7460189
Alignment:
Q  62 gataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacat--aaaagtgatgtatttaatgaata 159  Q
    |||||||||| |||||||||||| ||||||| ||||| || | |||| |||||||||||| ||||||||||||||  ||||   || |||||||| ||||    
T  7460328 gataagctagatgattgaatttgtagtgttt-gtaaacttagcggttaaactagcttatatatatgaaatgacatgaaaaatatatatatttaattaata 7460230  T
Q  160 tttactatttttgttcaattaagattacaatggtaaaattgaga 203  Q
    | ||  |||||| ||||||| |||||| || |||||||||||||    
T  7460229 tata--attttt-ttcaatttagattataagggtaaaattgaga 7460189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 135
Target Start/End: Original strand, 35272476 - 35272552
Alignment:
Q  60 cggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagctt-ataaatatgaaatgaca 135  Q
    ||||||||||||||||||||||||| ||||||||||||||||   ||||||| || ||| | |||||||||||||||    
T  35272476 cggataagctagctgattgaatttgtagtgtttagtaaaattatcggttgaagtatcttaaaaaatatgaaatgaca 35272552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 132 - 221
Target Start/End: Original strand, 5799165 - 5799251
Alignment:
Q  132 gacataaaagtgatgtatttaatgaatatttactatttttgttcaattaagattacaatggtaaaattgagataaatgatgataagctat 221  Q
    ||||||||  ||||||||||||||||||||||   ||||| | | ||||| |||||||||||||||||||||||||| || |||| ||||    
T  5799165 gacataaacttgatgtatttaatgaatattta---tttttttacgattaatattacaatggtaaaattgagataaattattataaactat 5799251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 111 - 224
Target Start/End: Original strand, 22593547 - 22593657
Alignment:
Q  111 actagcttataaatatgaaatgacataaaagtgatgtatttaatgaatatttactatttttgttcaattaagattacaatggtaaaattgagataaatga 210  Q
    ||||||||||||||||||||||||||||||   || |||||||| ||||||   || |||| ||||||||||||||    |||||||||  ||||||  |    
T  22593547 actagcttataaatatgaaatgacataaaaaatatatatttaattaatatt---taattttcttcaattaagattagtggggtaaaattaggataaaaaa 22593643  T
Q  211 tgataagctataag 224  Q
    ||||||||||||||    
T  22593644 tgataagctataag 22593657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 163
Target Start/End: Complemental strand, 1415958 - 1415860
Alignment:
Q  66 agctagctgattgaatttgcagtgtttag-taaaatttgtggttgaactagcttataaatatgaaatgacataaaagtgatgtatttaatgaatattta 163  Q
    |||||| ||||| | |||| ||||||| | ||||||| | |||| ||||||||||||||| |||||||||||||||  ||| |||||||||||| ||||    
T  1415958 agctaggtgatttagtttgtagtgttttgataaaattagcggttaaactagcttataaatgtgaaatgacataaaaaagatatatttaatgaatgttta 1415860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 75 - 163
Target Start/End: Original strand, 30173402 - 30173490
Alignment:
Q  75 attgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaagtgatgtatttaatgaatattta 163  Q
    |||||||||| | |||||  ||||||| | ||||||| ||| |||||||||||||||||||||||| | || |||||||| ||| ||||    
T  30173402 attgaatttgtaatgtttgttaaaattagcggttgaagtagtttataaatatgaaatgacataaaaataatatatttaattaatcttta 30173490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 73 - 163
Target Start/End: Original strand, 15601980 - 15602069
Alignment:
Q  73 tgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaagtgatgtatttaatgaatattta 163  Q
    |||||||||||  || ||||| ||||||| ||||||||||||| |||| |||||||||||||| |||| |||| |||| |||  |||||||    
T  15601980 tgattgaatttatagcgtttattaaaattagtggttgaactagtttat-aatatgaaatgacacaaaaatgatttattgaattgatattta 15602069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 142 - 216
Target Start/End: Original strand, 33644649 - 33644722
Alignment:
Q  142 tgatgtatttaatgaatatttactatttttgttcaattaagattacaatggtaaaattgagataaatgatgataa 216  Q
    |||| |||| |||||||||||| |||  || ||||||||||| ||||| ||||||||||| ||||||||||||||    
T  33644649 tgatatattgaatgaatatttattatcatt-ttcaattaagaatacaagggtaaaattgaaataaatgatgataa 33644722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 197
Target Start/End: Original strand, 15942390 - 15942479
Alignment:
Q  105 ggttgaactagcttataaatatgaaatgacataaaagtgatgtatttaatgaatatttactatttttgttcaattaagattacaatggtaaaa 197  Q
    |||||||||||||||||||||||||||||||| | |   |  |||||||| |||||||||||||||  ||||||||||  ||||| |||||||    
T  15942390 ggttgaactagcttataaatatgaaatgacat-agatacaaatatttaatcaatatttactatttt--ttcaattaaggctacaagggtaaaa 15942479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 140
Target Start/End: Complemental strand, 32359401 - 32359316
Alignment:
Q  56 atagcggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttat-aaatatgaaatgacataaaa 140  Q
    ||||| ||||| ||||||||||||||||| | ||||| |||||||| | | ||||| |||||||| ||| ||||||||||| ||||    
T  32359401 atagcagataaactagctgattgaatttgtaatgtttggtaaaattagcgtttgaagtagcttataaaagatgaaatgacaaaaaa 32359316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 86 - 141
Target Start/End: Complemental strand, 34319270 - 34319215
Alignment:
Q  86 agtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaag 141  Q
    ||||||| |||||||| |||||| ||||| ||||||||| | ||||||||||||||    
T  34319270 agtgtttggtaaaattagtggttcaactaacttataaatgtaaaatgacataaaag 34319215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 35926612 - 35926663
Alignment:
Q  173 ttcaattaagattacaatggtaaaattgagataaatgatgataagctataag 224  Q
    |||||||||| |||||||||||||||||||||||   ||||||||| |||||    
T  35926612 ttcaattaaggttacaatggtaaaattgagataacaaatgataagccataag 35926663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 92
Target Start/End: Complemental strand, 20004388 - 20004346
Alignment:
Q  50 taacttatagcggataagctagctgattgaatttgcagtgttt 92  Q
    ||||||||||||||||| ||| ||||||||||||| |||||||    
T  20004388 taacttatagcggataatctaactgattgaatttgtagtgttt 20004346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 130
Target Start/End: Original strand, 20791808 - 20791874
Alignment:
Q  64 taagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaa 130  Q
    |||||||||| | |||||||| ||||||| |||||||| | | ||||| |||||||||||| |||||    
T  20791808 taagctagctaactgaatttgtagtgtttggtaaaattggcgattgaagtagcttataaatgtgaaa 20791874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 140
Target Start/End: Original strand, 38321948 - 38322042
Alignment:
Q  46 aagctaacttatagcggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaa 140  Q
    ||||||||| |||| |||||| |||| || ||||||||| ||||||| ||||||||   ||  || ||| || |||||||||||| |||||||||    
T  38321948 aagctaactgatagtggataaactagttgtttgaatttgtagtgtttggtaaaattaacggccgacctaactgataaatatgaaaagacataaaa 38322042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 140
Target Start/End: Complemental strand, 39583702 - 39583648
Alignment:
Q  86 agtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaa 140  Q
    |||||||||||||| | |||||| |||||||| |||||| | |||||||||||||    
T  39583702 agtgtttagtaaaaatagtggttcaactagctgataaatgtaaaatgacataaaa 39583648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 136
Target Start/End: Original strand, 4372804 - 4372865
Alignment:
Q  75 attgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacat 136  Q
    |||||| ||| |||||||  ||| ||| | |||||||||| |||||||||||||||||||||    
T  4372804 attgaacttggagtgttttctaagattagcggttgaactaacttataaatatgaaatgacat 4372865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 51 - 92
Target Start/End: Complemental strand, 7274766 - 7274725
Alignment:
Q  51 aacttatagcggataagctagctgattgaatttgcagtgttt 92  Q
    ||||||||||||| || ||||||||||||||||| |||||||    
T  7274766 aacttatagcggagaaactagctgattgaatttgtagtgttt 7274725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 140
Target Start/End: Original strand, 40856631 - 40856676
Alignment:
Q  95 taaaatttgtggttgaactagcttataaatatgaaatgacataaaa 140  Q
    ||||||| | |||||||||| |||||||||||||||||| ||||||    
T  40856631 taaaattagcggttgaactaacttataaatatgaaatgatataaaa 40856676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 140
Target Start/End: Complemental strand, 40942483 - 40942418
Alignment:
Q  75 attgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaa 140  Q
    |||||||||| | ||||| |||||||| | |||||||||| || | |||||| |||||||||||||    
T  40942483 attgaatttgaattgtttggtaaaattagcggttgaactaactgacaaatataaaatgacataaaa 40942418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 122
Target Start/End: Complemental strand, 4373315 - 4373243
Alignment:
Q  50 taacttatagcggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataa 122  Q
    ||||| ||||||||| |||||| || ||||||||  ||||||  |||||||| || |||||||||||| ||||    
T  4373315 taactgatagcggatgagctagttggttgaatttatagtgttcggtaaaattagttgttgaactagctgataa 4373243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 130
Target Start/End: Complemental strand, 30418533 - 30418497
Alignment:
Q  94 gtaaaatttgtggttgaactagcttataaatatgaaa 130  Q
    |||||||| ||||||||||||||||||||| ||||||    
T  30418533 gtaaaattagtggttgaactagcttataaacatgaaa 30418497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 140
Target Start/End: Complemental strand, 36021318 - 36021204
Alignment:
Q  24 aaaaaatagtgaatagctgataaagctaacttatagcggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaa 123  Q
    ||||||||| |||||||| |||| | || ||||||   ||||| | ||||| ||||||||| ||||||  |||| ||| | ||| || ||||||||||||    
T  36021318 aaaaaatagagaatagcttataagg-tagcttataatagataaaccagctggttgaatttgtagtgttcggtaacattagcggt-gagctagcttataaa 36021221  T
Q  124 tatgaaatgacataaaa 140  Q
    || ||||||||||||||    
T  36021220 tacgaaatgacataaaa 36021204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 8e-36; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 56 - 224
Target Start/End: Original strand, 32325994 - 32326164
Alignment:
Q  56 atagcggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagc----ttataaatatgaaatgacataaaagtgatgtattt 151  Q
    |||| ||||||||||| |||| ||||||| ||||||| |||||||| || |||||||||||    |||||| ||||||||||||||||| |||| |||||    
T  32325994 atagtggataagctagttgatggaatttgtagtgtttggtaaaattagtagttgaactagcttatttataattatgaaatgacataaaaatgatatattt 32326093  T
Q  152 aatgaatatttactatttttgttcaattaagattacaatggtaaaattgagataaatgatgataagctataag 224  Q
    ||| ||||||||  |||||| ||||||||||||| ||  ||||||||||| |||||| |||||||||||||||    
T  32326094 aattaatattta--attttttttcaattaagattgcaggggtaaaattgatataaataatgataagctataag 32326164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 36 - 162
Target Start/End: Original strand, 9198013 - 9198138
Alignment:
Q  36 atagctgataaagctaacttatagcggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgaca 135  Q
    ||||||||||| |||||||||||||||||||| ||| ||||||||| || ||||||| |||||||| || |||||||||| || ||||||||||||||||    
T  9198013 atagctgataa-gctaacttatagcggataagttagttgattgaatctgtagtgtttggtaaaattagttgttgaactagtttgtaaatatgaaatgaca 9198111  T
Q  136 taaaagtgatgtatttaatgaatattt 162  Q
    ||||| | || |||||||| |||||||    
T  9198112 taaaaataatatatttaattaatattt 9198138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 56 - 154
Target Start/End: Original strand, 18084864 - 18084961
Alignment:
Q  56 atagcggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaagtgatgtatttaat 154  Q
    |||||||||||| |||||||||||||||||||||||| |||||| ||  | ||||| || ||||||||||| ||||||||||||| |||| ||||||||    
T  18084864 atagcggataagttagctgattgaatttgcagtgtttggtaaaa-ttacgattgaattaacttataaatataaaatgacataaaactgatatatttaat 18084961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 56 - 224
Target Start/End: Original strand, 33282296 - 33282460
Alignment:
Q  56 atagcggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaagtgatgtatttaatg 155  Q
    ||||| |||||| ||| |||||||||||  |   ||| |||||||| |  |||||| ||  ||| ||||||||||||||||||||||||| ||||||||     
T  33282296 atagcagataagttagttgattgaatttatatgatttggtaaaattagctgttgaattaagttacaaatatgaaatgacataaaagtgatatatttaatt 33282395  T
Q  156 aatatttactatttttgttcaattaagattacaatggtaaaattgagataaatgatgataagctataag 224  Q
    ||| |||    ||||| || |||||||||||||| | ||||||  ||||||||||||||||| ||||||    
T  33282396 aattttt----tttttttttaattaagattacaaagctaaaatcaagataaatgatgataagatataag 33282460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 29 - 224
Target Start/End: Complemental strand, 37084096 - 37083906
Alignment:
Q  29 atagtgaatagctgataaagctaacttatagcggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatga 128  Q
    |||||| ||||||||||| |||| ||||  || |||||||||| |||||||||||  |||||||  ||  ||| ||||||||||||| |||||| |||||    
T  37084096 atagtggatagctgataa-gctagctta--gcagataagctagatgattgaatttt-agtgtttgatagcattagtggttgaactagtttataagtatga 37084001  T
Q  129 aatgacataaaagtgatgtatttaatgaatatttactatttttgttcaattaagattacaatggtaaaattgagat-aaatgatgataagctataag 224  Q
    |||||||||||   ||| |||||||| ||| ||||  ||| || ||||||||||  ||||| |||||||||| ||| |||  |||||||||||||||    
T  37084000 aatgacataaataagatatatttaattaatgttta--attatttttcaattaaggctacaagggtaaaattgtgataaaaatatgataagctataag 37083906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 77 - 223
Target Start/End: Complemental strand, 31029 - 30885
Alignment:
Q  77 tgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaagtgatgtatttaatgaatatttactatttttgttca 176  Q
    |||||||| ||| |||| ||||||| |||||| || ||  ||  |||||||||||||||||||| |||| |||||||  ||||||||  |||||| ||||    
T  31029 tgaatttgtagtatttaataaaattagtggttaaattaattttaaaatatgaaatgacataaaaatgatatatttaaataatattta--attttt-ttca 30933  T
Q  177 attaagattac-aatggtaaaattgagataaatgatgataagctataa 223  Q
    |||||  |||| ||| ||||||||||||||||| ||||||| ||||||    
T  30932 attaaagttactaatagtaaaattgagataaataatgataaactataa 30885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 70 - 158
Target Start/End: Complemental strand, 32109960 - 32109872
Alignment:
Q  70 agctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaagtgatgtatttaatgaat 158  Q
    |||||||||||||   ||||||| |||||||| |||| | |||||||||||| ||||||||||||||||||  ||| ||||||||||||    
T  32109960 agctgattgaattcatagtgtttggtaaaattagtggcttaactagcttatatatatgaaatgacataaaaaagatatatttaatgaat 32109872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 63 - 225
Target Start/End: Original strand, 20873056 - 20873217
Alignment:
Q  63 ataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaagtgat---gtatttaatgaata 159  Q
    ||||| ||||| |||||||||  ||||||| |||||||  | ||||||| || |||||| |||||||||||||||||| | ||    |||||||| ||||    
T  20873056 ataagttagcttattgaatttttagtgtttggtaaaatcagcggttgaagtaacttatacatatgaaatgacataaaaataataacatatttaattaata 20873155  T
Q  160 tttactatttttgttcaattaagattacaatggtaaaattgagataaatgatgataagctataagt 225  Q
    |||| ||||    ||||||| | ||||||  || ||||||| ||||||| ||||||||||||||||    
T  20873156 tttaatatt----ttcaattgaaattacatgggcaaaattgggataaataatgataagctataagt 20873217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 56 - 162
Target Start/End: Original strand, 36878892 - 36878997
Alignment:
Q  56 atagcggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaagtgatgtatttaatg 155  Q
    |||||||||||| ||||||||||||  |||||||||| ||||| ||||   ||||| |||||||| |||||||||||||||||||   || ||||||||     
T  36878892 atagcggataaggtagctgattgaacatgcagtgtttggtaaa-tttgcaattgaattagcttatcaatatgaaatgacataaaaaatatatatttaatt 36878990  T
Q  156 aatattt 162  Q
    |||||||    
T  36878991 aatattt 36878997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 62 - 140
Target Start/End: Complemental strand, 38053660 - 38053582
Alignment:
Q  62 gataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaa 140  Q
    |||||||||||| || |||| || |||||||||||||||| |  |||||  ||||||||||||||||||||||||||||    
T  38053660 gataagctagctaatcgaatatggagtgtttagtaaaattagcagttgagatagcttataaatatgaaatgacataaaa 38053582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 104 - 160
Target Start/End: Original strand, 25290161 - 25290217
Alignment:
Q  104 tggttgaactagcttataaatatgaaatgacataaaagtgatgtatttaatgaatat 160  Q
    |||||||| || |||||||||||||||||||||||||||||| ||||| ||||||||    
T  25290161 tggttgaagtaacttataaatatgaaatgacataaaagtgatatattttatgaatat 25290217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 154
Target Start/End: Complemental strand, 32118040 - 32117944
Alignment:
Q  58 agcggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaagtgatgtatttaat 154  Q
    |||||||||||||||||| |||||||  ||||||| |||| ||| |  | |||||||||||||||||||||||| |||| |||  ||| ||||||||    
T  32118040 agcggataagctagctgactgaatttttagtgtttggtaagattagcagctgaactagcttataaatatgaaataacatgaaaaagatatatttaat 32117944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 62 - 208
Target Start/End: Original strand, 33674390 - 33674533
Alignment:
Q  62 gataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaagtgatgtatttaatgaatatt 161  Q
    |||||||||||| |||||||||| |||||||  ||||||  |  |||||||||||| ||||||||||| |||| | ||| |||| |||||||| ||||      
T  33674390 gataagctagctcattgaatttgtagtgtttgctaaaatcagcagttgaactagctcataaatatgaagtgacgtgaaaatgatatatttaattaata-- 33674487  T
Q  162 tactatttttgttcaattaagattacaatggtaaaattgagataaat 208  Q
     | | ||||| ||||||||||||   |  ||||||||||||||||||    
T  33674488 -atttttttttttcaattaagatggtaggggtaaaattgagataaat 33674533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 69 - 223
Target Start/End: Original strand, 13799886 - 13800038
Alignment:
Q  69 tagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaagtgatgtatttaatgaatatttactatt 168  Q
    ||||||||||||||| ||||| ||  ||||||| | ||||||| || |||||||||  |||||  |||||||    | |||||||| |||| |||  |||    
T  13799886 tagctgattgaatttacagtgcttgataaaattagcggttgaagtaccttataaattcgaaatagcataaaaaaagtatatttaattaatactta--att 13799983  T
Q  169 tttgttcaattaagattacaatggtaaaattgagataaatgatgataagctataa 223  Q
    ||| ||||||||||||| ||  |||||||||||||||||   |||||||||||||    
T  13799984 ttttttcaattaagattgcaggggtaaaattgagataaaaagtgataagctataa 13800038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 224
Target Start/End: Complemental strand, 32582676 - 32582513
Alignment:
Q  56 atagcggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacat-aaaagtgatgtatttaat 154  Q
    ||||| ||||| |||| |||||||||||| ||||||| |||||||| |  | |||| |||||||||| ||||||||||||| ||||| | |  | ||||     
T  32582676 atagctgataacctagttgattgaatttgtagtgtttggtaaaattagccg-tgaagtagcttataagtatgaaatgacataaaaagaggttcaattaag 32582578  T
Q  155 gaatatttactatttttgttcaattaagattacaatggtaaaattgagataaatgatgataagctataag 224  Q
     || |||||     ||| ||||||||||||| ||| |||||||||||||||||   ||||||||||||||    
T  32582577 taacattta-----ttttttcaattaagattgcaagggtaaaattgagataaaaagtgataagctataag 32582513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 160
Target Start/End: Complemental strand, 1742880 - 1742789
Alignment:
Q  69 tagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaagtgatgtatttaatgaatat 160  Q
    ||||||||| |||||| | |||||  | ||||| ||||||||||||  ||||||||||||||||| |||||| | || |||||||| |||||    
T  1742880 tagctgattaaatttgtaatgtttgatgaaattggtggttgaactaatttataaatatgaaatgatataaaaatcatatatttaattaatat 1742789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 132
Target Start/End: Complemental strand, 11042121 - 11042063
Alignment:
Q  73 tgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatg 132  Q
    ||||||||||||  |||||| |||||||| |||||||||||| |||||||||||||||||    
T  11042121 tgattgaatttgt-gtgtttggtaaaattagtggttgaactaacttataaatatgaaatg 11042063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 140
Target Start/End: Complemental strand, 22838342 - 22838259
Alignment:
Q  57 tagcggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaa 140  Q
    ||||||||||| ||||| |||||||||| ||| |||  ||||||| | |||||||| | |||||||||||||| | ||||||||    
T  22838342 tagcggataagttagcttattgaatttgtagtctttgataaaattagcggttgaacaaacttataaatatgaagtcacataaaa 22838259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 133
Target Start/End: Complemental strand, 32645955 - 32645876
Alignment:
Q  54 ttatagcggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatga 133  Q
    ||||||||||||||||| | | ||||||||| | ||||| ||||| || ||||||||| ||||||||| |||||| ||||    
T  32645955 ttatagcggataagctaaccggttgaatttgtaatgtttggtaaatttagtggttgaagtagcttatatatatgacatga 32645876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 112
Target Start/End: Complemental strand, 35696696 - 35696637
Alignment:
Q  53 cttatagcggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaac 112  Q
    ||||||| |||||||||||| ||||||||||| ||||||| |||||||| ||| ||||||    
T  35696696 cttatagtggataagctagcagattgaatttgtagtgtttggtaaaattagtgattgaac 35696637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 117
Target Start/End: Complemental strand, 44560406 - 44560335
Alignment:
Q  46 aagctaacttatagcggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagct 117  Q
    |||||| || ||| ||||||||||| |||||||||| || ||||||| || ||||| |||||||||||||||    
T  44560406 aagctagctgataacggataagctaactgattgaatctgtagtgtttggtcaaattagtggttgaactagct 44560335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 101
Target Start/End: Original strand, 45021310 - 45021381
Alignment:
Q  24 aaaaaatagtgaatagctgataaagctaacttatagcggataagctagctgattgaatttgcagtgtttagtaaaatt 101  Q
    ||||||||||| ||||||||||| |||| |||||||||||||     |||||||||||||| ||||||| ||||||||    
T  45021310 aaaaaatagtggatagctgataa-gctagcttatagcggata-----gctgattgaatttgtagtgtttggtaaaatt 45021381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 137
Target Start/End: Complemental strand, 3729927 - 3729863
Alignment:
Q  73 tgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacata 137  Q
    |||||||||||| ||||||| |||  ||| | ||||||||| ||||||||||||||||| |||||    
T  3729927 tgattgaatttgtagtgtttggtatgattagcggttgaactggcttataaatatgaaataacata 3729863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 62 - 203
Target Start/End: Complemental strand, 22827885 - 22827749
Alignment:
Q  62 gataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaagtgatgtatttaatgaatatt 161  Q
    |||||| |||||| ||||||||| ||| ||   ||||||| | |||||||||| |||||||||||||||| || || ||   || | |||||||||||||    
T  22827885 gataagttagctggttgaatttgtagtcttgtataaaattagcggttgaactaacttataaatatgaaatcacttacaa--aatatgtttaatgaatatt 22827788  T
Q  162 tactatttttgttcaattaagattacaatggtaaaattgaga 203  Q
    ||  |||||| ||||| |||||| |||| ||||||| |||||    
T  22827787 ta--attttt-ttcaagtaagatgacaagggtaaaagtgaga 22827749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 86 - 141
Target Start/End: Original strand, 32025669 - 32025724
Alignment:
Q  86 agtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaag 141  Q
    ||||||| |||||||| |||||| ||||| ||||||||| | ||||||||||||||    
T  32025669 agtgtttggtaaaattagtggttcaactaacttataaatgtaaaatgacataaaag 32025724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 57 - 136
Target Start/End: Complemental strand, 37334713 - 37334634
Alignment:
Q  57 tagcggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacat 136  Q
    |||| |||||||||| ||||||||| ||||||||||  ||||||| | |  | || |||| |||||||||||||||||||    
T  37334713 tagcagataagctagttgattgaatatgcagtgtttgataaaattagcgactaaagtagcatataaatatgaaatgacat 37334634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 103 - 154
Target Start/End: Complemental strand, 41236181 - 41236131
Alignment:
Q  103 gtggttgaactagcttataaatatgaaatgacataaaagtgatgtatttaat 154  Q
    ||||||||| || ||||||||||||||||||||||||| |||| ||||||||    
T  41236181 gtggttgaattaacttataaatatgaaatgacataaaa-tgatatatttaat 41236131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 86 - 141
Target Start/End: Complemental strand, 42218337 - 42218282
Alignment:
Q  86 agtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaag 141  Q
    ||||||| |||||||| | ||||||||||||| |||||| | ||||||||||||||    
T  42218337 agtgtttggtaaaattagcggttgaactagctgataaatgtaaaatgacataaaag 42218282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 125
Target Start/End: Complemental strand, 50882514 - 50882420
Alignment:
Q  30 tagtgaatagctgataaagctaacttatagcggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaata 125  Q
    |||||||||||| |||| |||| |||||||   ||| ||||| ||||| |||||| |||| || |||||||| | || ||||||||||||||||||    
T  50882514 tagtgaatagcttataa-gctagcttatagtacataggctagttgatttaatttgtagtgattggtaaaattagcggctgaactagcttataaata 50882420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 62 - 135
Target Start/End: Original strand, 9780485 - 9780558
Alignment:
Q  62 gataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgaca 135  Q
    |||||| || ||||||| ||||| | ||||| ||||||||   ||||||||||| ||||||||| |||||||||    
T  9780485 gataagttaactgattggatttgtaatgtttggtaaaattaacggttgaactagtttataaatacgaaatgaca 9780558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 140
Target Start/End: Complemental strand, 36618166 - 36618086
Alignment:
Q  57 tagcggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaa 140  Q
    |||| |||||||||||  |||||||||| ||||||  |||||||| |    ||||||||||||| |||| ||||||||||||||    
T  36618166 tagctgataagctagccaattgaatttgtagtgttcggtaaaattagc---tgaactagcttatcaatacgaaatgacataaaa 36618086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 78 - 139
Target Start/End: Complemental strand, 38148023 - 38147962
Alignment:
Q  78 gaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaa 139  Q
    ||||||| ||| |||||||||||| | | ||||||||  ||||||||||||||||| |||||    
T  38148023 gaatttgtagtatttagtaaaattagcgattgaactaaattataaatatgaaatgatataaa 38147962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 131
Target Start/End: Complemental strand, 35682716 - 35682648
Alignment:
Q  63 ataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaat 131  Q
    ||||||||  |||||||||||| ||||||| |||||| | | | || || |||||||||||||||||||    
T  35682716 ataagctaattgattgaatttgtagtgtttggtaaaactagagatttaattagcttataaatatgaaat 35682648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 129
Target Start/End: Original strand, 42603847 - 42603903
Alignment:
Q  73 tgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaa 129  Q
    |||||||||||| |||||||| ||||||| | ||||||| ||| ||| |||||||||    
T  42603847 tgattgaatttgtagtgtttaataaaattagcggttgaagtagattaaaaatatgaa 42603903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 56 - 223
Target Start/End: Complemental strand, 42139607 - 42139444
Alignment:
Q  56 atagcggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaagtgatgtatttaatg 155  Q
    ||||||||||| ||||||  || |||||| ||||||| |||||||| |  |||||||||||||||||||||||||||| ||||||||| |  |||||||     
T  42139607 atagcggataatctagcttgttcaatttgtagtgtttggtaaaattagcagttgaactagcttataaatatgaaatgatataaaagtgctacatttaatt 42139508  T
Q  156 aatatttactatttttgttcaattaagattacaatggtaaaattgagataaatgatgataagctataa 223  Q
    ||||||||  |||||  |||||||||||||| |  |||||||||||||||||| ||||||||||||||    
T  42139507 aatattta--atttt--ttcaattaagattagaggggtaaaattgagataaataatgataagctataa 42139444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 69 - 224
Target Start/End: Complemental strand, 27679299 - 27679146
Alignment:
Q  69 tagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaagtgatgtatttaatgaatatttactatt 168  Q
    ||||||||||| |||  ||||| | |||||||| | ||||||||||||||||||||||||||||||||||||   ||  ||||||| |||||||| ||||    
T  27679299 tagctgattga-tttatagtgtctggtaaaattagcggttgaactagcttataaatatgaaatgacataaaaaaaat--atttaattaatatttattatt 27679203  T
Q  169 -tttgttcaattaagattacaatggtaaaattgagataaatgatgataagctataag 224  Q
     ||| ||| ||||||||||||  |||||||||||||||||| |||||||||||||||    
T  27679202 attttttcgattaagattacatgggtaaaattgagataaataatgataagctataag 27679146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 117 - 207
Target Start/End: Original strand, 38808816 - 38808903
Alignment:
Q  117 ttataaatatgaaatgacataaaagtgatgtatttaatgaatatttactatttttgttcaattaagattacaatggtaaaattgagataaa 207  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||  |||||  ||||||||||||||||| | | |||||||||||||    
T  38808816 ttataaatatgaaatgacataaaagtgatatatttaatgaatattta-aatttt--ttcaattaagattacaaggatgaaattgagataaa 38808903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 58 - 207
Target Start/End: Complemental strand, 44810281 - 44810135
Alignment:
Q  58 agcggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaagtgatgtatttaatgaa 157  Q
    ||||||||||||||||||||||||||| ||  ||| |||||| | | ||| |||||||||||||| |||| ||||| || |||  |||  ||||||| ||    
T  44810281 agcggataagctagctgattgaatttgtagcatttggtaaaactagcggt-gaactagcttataagtatgcaatgatatgaaaaagataaatttaatcaa 44810183  T
Q  158 tatttactatttttgttcaattaagattacaatggtaaaattgagataaa 207  Q
    |||||  ||||||  |||||||||| |||||| |||||||||||||||||    
T  44810182 tattt--tattttctttcaattaaggttacaagggtaaaattgagataaa 44810135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 51 - 140
Target Start/End: Original strand, 5946548 - 5946637
Alignment:
Q  51 aacttatagcggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaa 140  Q
    |||||||| ||||||||||| |||||||||| || |||| ||||| ||||| || |||||| |||||| |||||||||||||||||||||    
T  5946548 aacttataccggataagctaactgattgaatatgtagtgcttagtcaaattagttgttgaagtagcttgtaaatatgaaatgacataaaa 5946637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 53 - 136
Target Start/End: Original strand, 30804358 - 30804441
Alignment:
Q  53 cttatagcggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacat 136  Q
    |||||||| ||||||||| || |||||||||| ||||||| |||||||| | ||||||||||| |||||| |||||||||||||    
T  30804358 cttatagcagataagctaactaattgaatttgtagtgtttcgtaaaattagcggttgaactagattataagtatgaaatgacat 30804441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 56 - 220
Target Start/End: Complemental strand, 33625770 - 33625608
Alignment:
Q  56 atagcggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagctt-ataaatatgaaatgacataaaagtgatgtatttaat 154  Q
    ||||| || |||||||||| ||||||||| ||||||| ||| |||| | |  |||| |||||| ||||||||||||||| ||  ||||||| ||||||||    
T  33625770 atagctgacaagctagctggttgaatttgtagtgtttggtataattagcgactgaattagctttataaatatgaaatgatattgaagtgatatatttaat 33625671  T
Q  155 gaatatttactatttttgttcaattaagattacaatggtaaaattgagataaatgatgataagcta 220  Q
    | ||||| || |   ||   ||||||||||||||| | |||||||||||||||| |||||||||||    
T  33625670 gcatattaacaaaaatt---caattaagattacaaggttaaaattgagataaattatgataagcta 33625608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 79 - 223
Target Start/End: Original strand, 14477601 - 14477741
Alignment:
Q  79 aatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaagtgatgtatttaatgaatatttactatttttgttcaat 178  Q
    |||||||||||||||||||||     |||||||| | ||||||||||||||||||||||||| | || |||||| | ||| ||   ||||||| ||||||    
T  14477601 aatttgcagtgtttagtaaaacgaacggttgaacaaacttataaatatgaaatgacataaaa-ttatatatttagttaatgtt---tattttttttcaat 14477696  T
Q  179 taagattacaatggtaaaattgagataaatgatgataagctataa 223  Q
    ||||||| ||  ||| ||||||| |||||| ||||||||||||||    
T  14477697 taagattgcagaggttaaattgaaataaataatgataagctataa 14477741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 73 - 140
Target Start/End: Complemental strand, 21938104 - 21938037
Alignment:
Q  73 tgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaa 140  Q
    |||||||||||||||||||||||||||||   ||||||| || ||||||||||| |||||||||||||    
T  21938104 tgattgaatttgcagtgtttagtaaaattaacggttgaaatatcttataaatataaaatgacataaaa 21938037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 62 - 163
Target Start/End: Complemental strand, 8752684 - 8752584
Alignment:
Q  62 gataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaagtgatgtatttaatgaatatt 161  Q
    ||||||||| || |||||||||| ||| ||| ||||||| ||   ||||| |||||||||||||||||||||||||||| |||| | |||||| ||||||    
T  8752684 gataagctaactaattgaatttgtagt-tttggtaaaatctgcatttgaattagcttataaatatgaaatgacataaaaatgatatgtttaattaatatt 8752586  T
Q  162 ta 163  Q
    ||    
T  8752585 ta 8752584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 224
Target Start/End: Original strand, 44984180 - 44984351
Alignment:
Q  56 atagcggataagctagctgattgaatttgcagtgtttagtaa---aatttgtggttgaactagcttataaatatgaaatgacataaaagtgatgt--att 150  Q
    |||| |||||||||||| |||| |||||| ||||||| ||||   |||| | |||| || || |||||||||||||||||||||||||   ||||  |||    
T  44984180 atagtggataagctagcagattcaatttgtagtgttttgtaataaaattagcggttaaagtaccttataaatatgaaatgacataaaaaa-atgtgcatt 44984278  T
Q  151 taatgaatatttactatttttgttcaattaagattacaatggtaaaattgagataaatgatgataagctataag 224  Q
    |||| |||||||| |  |||| ||| ||||||||||| | |||||||||||||||||   |||||| |||||||    
T  44984279 taattaatatttatttatttt-ttcgattaagattactagggtaaaattgagataaaaagtgataacctataag 44984351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 57 - 136
Target Start/End: Complemental strand, 15968045 - 15967966
Alignment:
Q  57 tagcggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacat 136  Q
    ||||||| || ||| || ||| |||||| |||| || |||||||| | ||||||||||||||||||||||||||||||||    
T  15968045 tagcggacaaactaactaattcaatttgtagtgcttggtaaaattagcggttgaactagcttataaatatgaaatgacat 15967966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 73 - 140
Target Start/End: Original strand, 28249823 - 28249890
Alignment:
Q  73 tgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaa 140  Q
    ||||| |||||| ||||| ||||||||||  ||||||| ||| |||||||||||||||||||||||||    
T  28249823 tgattaaatttgtagtgtgtagtaaaattaatggttgatctaacttataaatatgaaatgacataaaa 28249890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 56 - 150
Target Start/End: Complemental strand, 13463606 - 13463512
Alignment:
Q  56 atagcggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaagtgatgtatt 150  Q
    |||| ||||||||||| |||||||||||  | | ||||||||||||  | |||| ||||  |||||||||||||||| |||||||||||| ||||    
T  13463606 atagtggataagctagttgattgaatttatattatttagtaaaattaatagttggactatattataaatatgaaatggcataaaagtgatatatt 13463512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 176 - 224
Target Start/End: Complemental strand, 15804512 - 15804464
Alignment:
Q  176 aattaagattacaatggtaaaattgagataaatgatgataagctataag 224  Q
    ||||||||||| || |||||||||||||||||| |||||||||||||||    
T  15804512 aattaagattagaagggtaaaattgagataaataatgataagctataag 15804464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 152
Target Start/End: Original strand, 38808735 - 38808818
Alignment:
Q  69 tagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaagtgatgtattta 152  Q
    |||||||||||| ||||| ||||| ||||||||  || |||||||| |||| ||||||||| |||| |||| ||||| ||||||    
T  38808735 tagctgattgaacttgcactgtttggtaaaattaatgtttgaactaacttaaaaatatgaactgacttaaaggtgatatattta 38808818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 57 - 163
Target Start/End: Complemental strand, 9613839 - 9613733
Alignment:
Q  57 tagcggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaagtgatgtatttaatga 156  Q
    ||||| |||||||| || |||||||||  | ||||| |||||||   ||| ||||||| ||||||||||||||||||||| ||| | || | |||||| |    
T  9613839 tagcgaataagctaactaattgaatttatattgtttggtaaaatcaatggctgaactatcttataaatatgaaatgacatgaaaataatatgtttaatta 9613740  T
Q  157 atattta 163  Q
    |||||||    
T  9613739 atattta 9613733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 138
Target Start/End: Complemental strand, 31063181 - 31063099
Alignment:
Q  56 atagcggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataa 138  Q
    ||||||||||| ||| | ||||||||||| |||||||  ||| ||| | ||||||| ||  ||||||||||||||||||||||    
T  31063181 atagcggataaactaacagattgaatttgtagtgtttgataagattagcggttgaagtaatttataaatatgaaatgacataa 31063099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 53 - 138
Target Start/End: Original strand, 1660205 - 1660290
Alignment:
Q  53 cttatagcggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataa 138  Q
    |||||||||||| || ||| |||||||||||| ||||||| ||  ||||   ||||||||| | ||||||||||||||| ||||||    
T  1660205 cttatagcggatgagatagttgattgaatttgtagtgtttggtggaattaagggttgaacttgtttataaatatgaaataacataa 1660290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 140
Target Start/End: Complemental strand, 5505783 - 5505703
Alignment:
Q  59 gcggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaa 140  Q
    |||||||||| || ||||| |||||| | ||||||||||| || | ||||||| ||||||| ||||||||||||||| ||||    
T  5505783 gcggataagccagttgattaaatttgtactgtttagtaaacttggcggttgaattagctta-aaatatgaaatgacaaaaaa 5505703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 140
Target Start/End: Complemental strand, 40910139 - 40910052
Alignment:
Q  56 atagcggataagctagctgattgaatttgcagtgtttagtaa---aatttgtggttgaactagcttataaatatgaaatgacataaaa 140  Q
    |||| |||||||||||| |||| |||||| ||||||| ||||   |||| | |||| || || |||||||||||||||||||||||||    
T  40910139 atagtggataagctagcagattcaatttgtagtgttttgtaataaaattagcggttaaagtaccttataaatatgaaatgacataaaa 40910052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 138
Target Start/End: Complemental strand, 4549070 - 4548994
Alignment:
Q  62 gataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataa 138  Q
    ||||||||| || |||||||||| | ||||| |||||||| | ||| | ||| | ||||||||||||||||||||||    
T  4549070 gataagctaactcattgaatttgtattgtttggtaaaattggcggtcggactggtttataaatatgaaatgacataa 4548994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 162
Target Start/End: Complemental strand, 18491999 - 18491943
Alignment:
Q  106 gttgaactagcttataaatatgaaatgacataaaagtgatgtatttaatgaatattt 162  Q
    ||||||||| ||||| |||||||||||||||||||  ||| |||||||| |||||||    
T  18491999 gttgaactaacttattaatatgaaatgacataaaaaagatatatttaattaatattt 18491943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 154
Target Start/End: Original strand, 963953 - 964000
Alignment:
Q  107 ttgaactagcttataaatatgaaatgacataaaagtgatgtatttaat 154  Q
    |||||||| ||||||||||| ||||||||||||| |||| ||||||||    
T  963953 ttgaactatcttataaatataaaatgacataaaactgatatatttaat 964000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 56 - 131
Target Start/End: Complemental strand, 5946451 - 5946376
Alignment:
Q  56 atagcggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaat 131  Q
    |||||||||||| |||||||||||||||  | ||||| ||||| || |  | ||||||||||| ||||||||||||    
T  5946451 atagcggataaggtagctgattgaatttataatgtttggtaaagttggccgctgaactagcttgtaaatatgaaat 5946376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 53 - 140
Target Start/End: Original strand, 12238211 - 12238298
Alignment:
Q  53 cttatagcggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaa 140  Q
    |||||| | |||||||||  |||||||||||| ||||||| |||||||| |  ||| || || |||||| ||||||||| ||||||||    
T  12238211 cttataacagataagctaattgattgaatttgtagtgttttgtaaaattagcagttaaattaacttatatatatgaaataacataaaa 12238298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 77 - 140
Target Start/End: Complemental strand, 21721981 - 21721918
Alignment:
Q  77 tgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaa 140  Q
    |||||||| || |||| |||||||| |  |||||| |||||||||||||| |||||||||||||    
T  21721981 tgaatttgtagagtttggtaaaattagcagttgaaatagcttataaatataaaatgacataaaa 21721918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 69 - 140
Target Start/End: Complemental strand, 27863939 - 27863868
Alignment:
Q  69 tagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaa 140  Q
    |||||||||||||||| |||||||  |||||||   ||||||  |||||||||||| |||||||||| ||||    
T  27863939 tagctgattgaatttgtagtgtttgataaaattaccggttgaggtagcttataaatgtgaaatgacaaaaaa 27863868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 73 - 134
Target Start/End: Original strand, 33651167 - 33651228
Alignment:
Q  73 tgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgac 134  Q
    ||||| |||||| ||| |||||||||||| |  ||||||||| |||| ||||||||||||||    
T  33651167 tgatttaatttgtagtttttagtaaaattagcagttgaactaacttacaaatatgaaatgac 33651228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 224
Target Start/End: Complemental strand, 39710643 - 39710488
Alignment:
Q  69 tagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaagtgatgtatttaatgaatatttactatt 168  Q
    |||||||||||||||  | ||| |  |||||||  |||||||| ||||| || ||||||||||||||||||   ||| | |||||| |||||||| | |     
T  39710643 tagctgattgaatttataatgtatgataaaattaatggttgaagtagctgatgaatatgaaatgacataaacaagatatgtttaattaatattta-ttta 39710545  T
Q  169 tttgttcaattaagattacaatggtaaaattgaga-taaatgatgataagctataag 224  Q
    ||| || ||||||||| |||  |||||||| ||||  |||  |||||||||||||||    
T  39710544 tttttttaattaagataacaggggtaaaatggagagaaaaaaatgataagctataag 39710488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 5e-28; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 53 - 225
Target Start/End: Original strand, 9749791 - 9749959
Alignment:
Q  53 cttatagcggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaagtgatgtattta 152  Q
    ||||||||| ||||||||||||||| |||||| ||||||| |||||||| ||||||||| |||  |||||||||||| | |||| ||| | || ||||||    
T  9749791 cttatagcgcataagctagctgatttaatttgtagtgtttggtaaaattagtggttgaagtagtgtataaatatgaagtaacatgaaaataatatattta 9749890  T
Q  153 atgaatatttactatttttgttcaattaagattacaatggtaaaattgagataaatgatgataagctataagt 225  Q
    || |||||| |  | |    ||||||||||||| ||  |||||||||||||||||| ||||||||||||||||    
T  9749891 attaatattaaaaaat----ttcaattaagattgcaggggtaaaattgagataaataatgataagctataagt 9749959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 29 - 163
Target Start/End: Complemental strand, 29052805 - 29052673
Alignment:
Q  29 atagtgaatagctgataaagctaacttatagcggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatga 128  Q
    |||||| |||| |||||| |||| ||||||  |||||||||||||||||||||||||||||||| |||||||  | |||| | |||||||||||||||||    
T  29052805 atagtggatagttgataa-gctagcttatataggataagctagctgattgaatttgcagtgtttggtaaaataagcggttcacctagcttataaatatga 29052707  T
Q  129 aatgacataaaagtgatgtatttaatgaatattta 163  Q
    |||||||||||| | || |||||||| ||||||||    
T  29052706 aatgacataaaaat-atatatttaattaatattta 29052673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 88 - 223
Target Start/End: Original strand, 2046043 - 2046175
Alignment:
Q  88 tgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaagtgatgtatttaatgaatatttactatttttgttcaattaagattac 187  Q
    ||||| |||||||| |  |||||| || |||||||||||||||| ||||| || |||| |||||||||||||| || ||||||  ||||||||||||| |    
T  2046043 tgtttggtaaaattagctgttgaattaacttataaatatgaaataacatagaattgatatatttaatgaatatata-tatttt--ttcaattaagatttc 2046139  T
Q  188 aatggtaaaattgagataaatgatgataagctataa 223  Q
    || |||||||||||||| ||| ||||||| ||||||    
T  2046140 aagggtaaaattgagatgaataatgataaactataa 2046175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 60 - 140
Target Start/End: Complemental strand, 34544502 - 34544422
Alignment:
Q  60 cggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaa 140  Q
    ||||||||||||| | ||||||||| |||||||  || |||| ||||||||||||||||||||||||||||||||||||||    
T  34544502 cggataagctagcgggttgaatttgtagtgtttgatacaattagtggttgaactagcttataaatatgaaatgacataaaa 34544422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 72 - 135
Target Start/End: Original strand, 2748288 - 2748351
Alignment:
Q  72 ctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgaca 135  Q
    |||||||||||| ||||||||| |||||||   ||||||||||| |||||||||||||||||||    
T  2748288 ctgattgaatttacagtgtttaataaaattaacggttgaactagtttataaatatgaaatgaca 2748351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 69 - 206
Target Start/End: Complemental strand, 5976842 - 5976707
Alignment:
Q  69 tagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaagtgatgt--atttaatgaatatttacta 166  Q
    ||||| ||||||| |||| ||||| ||||||||||  |||||| || ||||||||||| |||||||||||||   ||||  ||||||| ||||||||       
T  5976842 tagctcattgaatctgcaatgtttggtaaaatttgcagttgaagtaacttataaatataaaatgacataaaaaaaatgtacatttaattaatattta--- 5976746  T
Q  167 tttttgttcaattaagattacaatggtaaaattgagataa 206  Q
      ||| ||||||| ||||| ||| ||||||||||||||||    
T  5976745 -gttttttcaatttagattgcaagggtaaaattgagataa 5976707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 106 - 224
Target Start/End: Complemental strand, 9750355 - 9750243
Alignment:
Q  106 gttgaactagcttataaatatgaaatgacataaaagtgatgtatttaatgaatatttactatttttgttcaattaagattacaatggtaaaattgagata 205  Q
    |||||||||||||||||||||||||| ||||||||  ||| | |||| |      ||  ||||||| ||||||||||||  ||| |||||||||||||||    
T  9750355 gttgaactagcttataaatatgaaatcacataaaaaggatatgtttatt------tttttattttttttcaattaagatagcaaaggtaaaattgagata 9750262  T
Q  206 aatgatgataagctataag 224  Q
    ||  |||||||||||||||    
T  9750261 aaatatgataagctataag 9750243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 122
Target Start/End: Complemental strand, 2255967 - 2255918
Alignment:
Q  73 tgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataa 122  Q
    |||||||||||| |||||||| ||||||| ||||||||||||||||||||    
T  2255967 tgattgaatttgtagtgtttaataaaattagtggttgaactagcttataa 2255918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 154
Target Start/End: Original strand, 25142249 - 25142330
Alignment:
Q  73 tgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaagtgatgtatttaat 154  Q
    |||||||||||| | | |||  |||||||  |||||||||||  ||||||||||||||||| ||||||||||| ||||||||    
T  25142249 tgattgaatttgtaatatttgataaaattaatggttgaactattttataaatatgaaatgatataaaagtgatatatttaat 25142330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 141
Target Start/End: Original strand, 8014403 - 8014494
Alignment:
Q  50 taacttatagcggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaag 141  Q
    |||||||||| |||||| |||   ||||||||||  ||||||| |||||||| |  || ||||||||||||||| ||||||||||| |||||    
T  8014403 taacttatagtggataaactacaggattgaatttatagtgtttggtaaaattagcagtcgaactagcttataaacatgaaatgacaaaaaag 8014494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 154
Target Start/End: Complemental strand, 9195700 - 9195625
Alignment:
Q  80 atttgcagtgtttagtaaaatttgtgg-ttgaactagcttataaatatgaaatgacataaaagtgatgtatttaat 154  Q
    ||||||||||||| ||||||||   || ||||||| |||||||||||||||||||||||||| || | ||||||||    
T  9195700 atttgcagtgtttggtaaaattaaaggattgaactcgcttataaatatgaaatgacataaaaatggtatatttaat 9195625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 75 - 137
Target Start/End: Complemental strand, 724767 - 724705
Alignment:
Q  75 attgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacata 137  Q
    |||||||||| |||||||  ||||||| ||||||||| |||||||||||||| |||| |||||    
T  724767 attgaatttgtagtgtttgataaaattagtggttgaagtagcttataaatataaaataacata 724705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 176 - 225
Target Start/End: Original strand, 32448150 - 32448199
Alignment:
Q  176 aattaagattacaatggtaaaattgagataaatgatgataagctataagt 225  Q
    ||||||||| |||| |||||||||||||||||||||| |||| |||||||    
T  32448150 aattaagataacaagggtaaaattgagataaatgatggtaagatataagt 32448199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 86 - 141
Target Start/End: Original strand, 27720057 - 27720112
Alignment:
Q  86 agtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaag 141  Q
    ||||||| |||||||| | |||| ||||||||||||||| | ||||||||||||||    
T  27720057 agtgtttggtaaaattagcggttcaactagcttataaatgtaaaatgacataaaag 27720112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 4405557 - 4405611
Alignment:
Q  168 ttttgttcaattaagattacaatggtaaaattgagataaatgatgataagctata 222  Q
    |||| |||||||||||| |||| ||||||||||||| |||  |||||||||||||    
T  4405557 tttttttcaattaagataacaaaggtaaaattgagagaaaaaatgataagctata 4405611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 153
Target Start/End: Complemental strand, 9195876 - 9195838
Alignment:
Q  115 gcttataaatatgaaatgacataaaagtgatgtatttaa 153  Q
    |||||||||||||||||||||||||| |||| |||||||    
T  9195876 gcttataaatatgaaatgacataaaaatgatatatttaa 9195838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 136
Target Start/End: Complemental strand, 32662377 - 32662303
Alignment:
Q  62 gataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacat 136  Q
    ||||| ||| ||||||||| ||  |||||| |||| |||| | | |||||||| |||||||||||||||||||||    
T  32662377 gataaactaactgattgaacttctagtgttaagtacaattagcgattgaactaacttataaatatgaaatgacat 32662303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 140
Target Start/End: Complemental strand, 1288501 - 1288436
Alignment:
Q  75 attgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaa 140  Q
    ||||| |||| |||||||  |||||||   ||||||| || |||||||||||||||||||||||||    
T  1288501 attgattttgtagtgtttgataaaattaacggttgaaataacttataaatatgaaatgacataaaa 1288436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 62 - 139
Target Start/End: Complemental strand, 13692596 - 13692520
Alignment:
Q  62 gataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaa 139  Q
    |||||| |||||||| ||||| | ||| |||  ||||||| ||||||||| ||| | |||||||||||||||||||||    
T  13692596 gataagttagctgatagaatt-gtagtatttgataaaattagtggttgaagtagttaataaatatgaaatgacataaa 13692520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 114
Target Start/End: Complemental strand, 7903094 - 7903054
Alignment:
Q  74 gattgaatttgcagtgtttagtaaaatttgtggttgaacta 114  Q
    ||||||||||| ||||||| ||||||||| |||||||||||    
T  7903094 gattgaatttgaagtgtttggtaaaatttatggttgaacta 7903054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 141
Target Start/End: Complemental strand, 32560684 - 32560596
Alignment:
Q  53 cttatagcggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaag 141  Q
    |||||||| || ||| ||| | ||| || ||| ||||||| |||||||| || |||||| | ||| |||||||| ||||||||||||||    
T  32560684 cttatagctgaaaagatagtttattaaaattgaagtgtttggtaaaattagttgttgaagtggctgataaatataaaatgacataaaag 32560596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 7e-27; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 53 - 216
Target Start/End: Complemental strand, 2525374 - 2525216
Alignment:
Q  53 cttatagcggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaagtgatgtattta 152  Q
    |||||||||||||||||||||||||||||||| | ||||| |||||||| |  | ||||||||||||||||||||||||  ||||||| || | ||||||    
T  2525374 cttatagcggataagctagctgattgaatttgtattgtttggtaaaattagcagctgaactagcttataaatatgaaattgcataaaaatg-tatattta 2525276  T
Q  153 atgaatatttactatttttgttcaattaagattacaatggtaaaattgagataaatgatgataa 216  Q
     ||||||||||  |||||  |||||| |||| ||||| ||||||||||||| |||  |||||||    
T  2525275 ttgaatattta--atttt--ttcaatcaagactacaagggtaaaattgagagaaaaaatgataa 2525216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 69 - 223
Target Start/End: Original strand, 24314160 - 24314311
Alignment:
Q  69 tagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaagtgatgtatttaatgaatatttactatt 168  Q
    |||||||||||||||| ||| ||| ||||||||   ||||||| ||| || ||||||||||||| |||||||||||| |||||||||||||||||  |||    
T  24314160 tagctgattgaatttgtagt-tttggtaaaattaacggttgaattagtttgtaaatatgaaatggcataaaagtgatatatttaatgaatattta--att 24314256  T
Q  169 tttgttcaa-ttaagattacaatg-gtaaaattgagataaatgatgataagctataa 223  Q
    ||  ||||| |||||||||||| | |||||||||||||||| ||||||||| |||||    
T  24314257 tt--ttcaatttaagattacaaagagtaaaattgagataaacgatgataagttataa 24314311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 81 - 208
Target Start/End: Original strand, 87160 - 87286
Alignment:
Q  81 tttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaagtgatgtatttaatgaatatttactatttttgttcaatta 180  Q
    |||| ||||||| |||||||| | ||||||| ||| || ||||||||||||||||||||| ||||  ||||||  |||||||| | ||||| ||||||||    
T  87160 tttgtagtgttttgtaaaattagcggttgaattagattgtaaatatgaaatgacataaaaatgattcatttaaataatatttaatcttttt-ttcaatta 87258  T
Q  181 agattacaatggtaaaattgagataaat 208  Q
    |||||| |  ||||||||||||||||||    
T  87259 agattagaggggtaaaattgagataaat 87286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 119 - 224
Target Start/End: Original strand, 2404654 - 2404756
Alignment:
Q  119 ataaatatgaaatgacataaaagtgatgtatttaatgaatatttactatttttgttcaattaagattacaatggtaaaattgagataaatgatgataagc 218  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||  | ||||  |||||||||||||||| | |||||||||| || |||||||||| |    
T  2404654 ataaatatgaaatgatataaaagtgatatatttaatgaatattta--actttt-ctcaattaagattacaaggataaaattgaggtacatgatgataaac 2404750  T
Q  219 tataag 224  Q
    ||||||    
T  2404751 tataag 2404756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 66 - 140
Target Start/End: Complemental strand, 15051040 - 15050966
Alignment:
Q  66 agctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaa 140  Q
    ||||||||||||||||||  ||||||| |||||||| |||||||||||||||||| | |||||||||||||||||    
T  15051040 agctagctgattgaatttagagtgtttggtaaaattagtggttgaactagcttatgagtatgaaatgacataaaa 15050966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 56 - 154
Target Start/End: Complemental strand, 7379634 - 7379537
Alignment:
Q  56 atagcggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaagtgatgtatttaat 154  Q
    |||| ||||||| ||||||||||| |||||| ||||| ||||||||   | ||||| || ||||||||||| ||||||||||||| |||| ||||||||    
T  7379634 atagtggataagttagctgattgagtttgcaatgtttggtaaaattac-gattgaattaacttataaatataaaatgacataaaattgatatatttaat 7379537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 56 - 154
Target Start/End: Complemental strand, 31740664 - 31740567
Alignment:
Q  56 atagcggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaagtgatgtatttaat 154  Q
    ||||| |||||| ||||| |||||||||||||||||| |||||| ||  | ||||| || |||||||||||||||| |||||||| | || ||||||||    
T  31740664 atagcagataagttagcttattgaatttgcagtgtttggtaaaa-ttacgattgaattaacttataaatatgaaataacataaaactaatatatttaat 31740567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 140
Target Start/End: Original strand, 43911097 - 43911171
Alignment:
Q  66 agctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaa 140  Q
    |||||| |||||||||||| ||| ||| |||||||  |||||||||||| |||||||| ||||||||| ||||||    
T  43911097 agctagatgattgaatttgtagtatttggtaaaatcagtggttgaactaacttataaacatgaaatgatataaaa 43911171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 94 - 224
Target Start/End: Original strand, 44235370 - 44235497
Alignment:
Q  94 gtaaaatttgtggttgaactagcttataaatatgaaatgacat-aaaagtgatgtatttaatgaatatttactatttttgttcaattaagattacaatgg 192  Q
    |||||||| | ||||||| ||| |||||||||||||||||||| |||| || | |||||||| ||||||||    | || | ||||||||||||||  ||    
T  44235370 gtaaaattagcggttgaagtagtttataaatatgaaatgacataaaaaatggtatatttaattaatattta----tgttttccaattaagattacatggg 44235465  T
Q  193 taaaattgagataaatgatgataagctataag 224  Q
    ||||||| ||||||| || |||||| ||||||    
T  44235466 taaaattcagataaaagaggataagttataag 44235497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 56 - 140
Target Start/End: Original strand, 13438306 - 13438390
Alignment:
Q  56 atagcggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaa 140  Q
    ||||| ||| |||||||| ||| |||||| ||||||| || ||||| | |||| ||||| ||||||||||| |||||||||||||    
T  13438306 atagctgatgagctagcttattaaatttgtagtgtttggttaaattagcggttaaactaacttataaatataaaatgacataaaa 13438390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 56 - 140
Target Start/End: Original strand, 28175428 - 28175512
Alignment:
Q  56 atagcggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaa 140  Q
    ||||||||| |||||| ||  |||||||| |||||||  || |||| | ||||||| ||||||| ||||||||||||||||||||    
T  28175428 atagcggatcagctagttggctgaatttgtagtgtttgatataattagcggttgaagtagcttacaaatatgaaatgacataaaa 28175512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 63 - 121
Target Start/End: Complemental strand, 15050682 - 15050624
Alignment:
Q  63 ataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttata 121  Q
    ||||||||||| ||||||| ||||||||||||||||||| |  ||||||||| ||||||    
T  15050682 ataagctagcttattgaatctgcagtgtttagtaaaattagcagttgaactaacttata 15050624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 106 - 140
Target Start/End: Original strand, 36112697 - 36112731
Alignment:
Q  106 gttgaactagcttataaatatgaaatgacataaaa 140  Q
    |||||||||||||||||||||||||||||||||||    
T  36112697 gttgaactagcttataaatatgaaatgacataaaa 36112731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 139
Target Start/End: Complemental strand, 24171530 - 24171477
Alignment:
Q  86 agtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaa 139  Q
    ||||||| |||||||| |||||| |||||||| |||||||| ||||||||||||    
T  24171530 agtgtttggtaaaattagtggttcaactagctgataaatataaaatgacataaa 24171477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 224
Target Start/End: Complemental strand, 42967914 - 42967801
Alignment:
Q  111 actagcttataaatatgaaatgacataaaagtgatgtatttaatgaatatttactatttttgttcaattaagattacaatggtaaaattgagataaatga 210  Q
    |||||||||||||||||||||||||||||  | || |||||| | ||||| |  | ||||| ||||||||||| ||||  |||||||||   ||||||      
T  42967914 actagcttataaatatgaaatgacataaagataatatatttagttaatatatttttttttttttcaattaagaatacatgggtaaaatttgaataaatag 42967815  T
Q  211 tgataagctataag 224  Q
    ||||||||| ||||    
T  42967814 tgataagctttaag 42967801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 140
Target Start/End: Original strand, 25129807 - 25129871
Alignment:
Q  76 ttgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaa 140  Q
    ||||||||| ||||||| ||||||||||||   ||||||| |||||| ||||||||||| |||||    
T  25129807 ttgaatttgtagtgtttggtaaaatttgtgaccgaactaggttataactatgaaatgacgtaaaa 25129871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 158
Target Start/End: Complemental strand, 34267472 - 34267389
Alignment:
Q  74 gattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaagtgatgtatttaatgaat 158  Q
    ||||||||||| | |||||| || ||||||  |||||| || ||||||||||||||||  | |||||||||| ||||||||||||    
T  34267472 gattgaatttgtattgtttaatataatttgaagttgaatta-cttataaatatgaaatagcgtaaaagtgatatatttaatgaat 34267389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 105 - 140
Target Start/End: Complemental strand, 883915 - 883880
Alignment:
Q  105 ggttgaactagcttataaatatgaaatgacataaaa 140  Q
    ||||||| ||||||||||||||||||||||||||||    
T  883915 ggttgaagtagcttataaatatgaaatgacataaaa 883880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 105 - 140
Target Start/End: Complemental strand, 1243244 - 1243209
Alignment:
Q  105 ggttgaactagcttataaatatgaaatgacataaaa 140  Q
    ||||||| ||||||||||||||||||||||||||||    
T  1243244 ggttgaagtagcttataaatatgaaatgacataaaa 1243209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 88 - 163
Target Start/End: Original strand, 28543545 - 28543620
Alignment:
Q  88 tgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaagtgatgtatttaatgaatattta 163  Q
    ||||| |||||||| ||| ||||| ||| ||||||||||||||| || |||||   ||||||||||| ||||||||    
T  28543545 tgtttggtaaaattagtgattgaaatagtttataaatatgaaataacttaaaaaatatgtatttaattaatattta 28543620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 140
Target Start/End: Complemental strand, 24847337 - 24847248
Alignment:
Q  50 taacttatagcggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaa 140  Q
    |||||| |||| ||||||||||| |||| |||||| |||||||  |||||||   |||| ||| |||||||||||| ||||| ||||||||    
T  24847337 taacttgtagcagataagctagccgattaaatttgaagtgtttgataaaattaacggtt-aacgagcttataaataagaaataacataaaa 24847248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 12473022 - 12473062
Alignment:
Q  59 gcggataagctagctgattgaatttgcagtgtttagtaaaa 99  Q
    ||||||||| |||||||||||||||| ||||||| ||||||    
T  12473022 gcggataagttagctgattgaatttgtagtgttttgtaaaa 12473062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 56 - 224
Target Start/End: Original strand, 49753 - 49917
Alignment:
Q  56 atagcggataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaagtgatgtatttaatg 155  Q
    |||| |||||| |||| |||||| ||||| ||| ||| |||||||| |||| |||  ||| | |||||||||||||||||| |||    ||  ||||||     
T  49753 atagtggataaactagttgattggatttgtagtatttggtaaaattagtggctgacttagttgataaatatgaaatgacatgaaaaatttgcttttaatt 49852  T
Q  156 aatatttactatttttgttcaattaagattacaatggtaaaattgagataaatgatgataagctataag 224  Q
     |||||||    |||| ||||||||||||| ||| |||||||||||||||||   ||||||||||||||    
T  49853 gatattta----tttttttcaattaagattgcaagggtaaaattgagataaaaagtgataagctataag 49917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 139
Target Start/End: Original strand, 84838 - 84914
Alignment:
Q  63 ataagctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaa 139  Q
    ||||||||||| ||||| |||| ||| |||  ||||||| |  |||||| ||||||||| |||||||||||||||||    
T  84838 ataagctagcttattgattttgtagtatttgttaaaattagcagttgaagtagcttatagatatgaaatgacataaa 84914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 86 - 141
Target Start/End: Original strand, 9479 - 9534
Alignment:
Q  86 agtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaag 141  Q
    ||||||| |||||||| | |||| ||||||||||||||| | ||||||||||||||    
T  9479 agtgtttggtaaaattagcggttcaactagcttataaatgtaaaatgacataaaag 9534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 73 - 140
Target Start/End: Complemental strand, 8141 - 8075
Alignment:
Q  73 tgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatgacataaaa 140  Q
    |||||||||||| |||||||  ||||||| || |||| |||| |||| ||||||||||||||||||||    
T  8141 tgattgaatttgtagtgtttgataaaattagttgttgcactacctta-aaatatgaaatgacataaaa 8075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 68 - 133
Target Start/End: Original strand, 338912 - 338977
Alignment:
Q  68 ctagctgattgaatttgcagtgtttagtaaaatttgtggttgaactagcttataaatatgaaatga 133  Q
    ||||||||||||||||| |||||||  || | || | ||||||| |||||||||||||| ||||||    
T  338912 ctagctgattgaatttgtagtgtttgatatagttagcggttgaagtagcttataaatataaaatga 338977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University