View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16629_high_5 (Length: 628)
Name: NF16629_high_5
Description: NF16629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16629_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 285; Significance: 1e-159; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 318 - 614
Target Start/End: Complemental strand, 32906827 - 32906531
Alignment:
| Q |
318 |
tataagcaatatttcgaaaaagattgagaaacattgcattgattaaaactcaagcaagaaagtgaatttgggtatttttcactaattatgatgcagcgtt |
417 |
Q |
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| T |
32906827 |
tataagcaatatttcgaaaaagattgagaaacattgcattgattaaaactcaagcaagaaagtgaatttgggtatttttcactaattatgatgcagcgtt |
32906728 |
T |
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| Q |
418 |
gcaagtaaagttattgtcgaggggaaaacagcgtaaatccaaatctaatgttccaaatccaaagtaatccaaatttaacatacaatcaaccgtagtaaat |
517 |
Q |
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| T |
32906727 |
gcaagtaaagttattgtcgaggggaaaacagcgtaaaaccaaatctaatgttccaaatccaaagtaatccaaatttaacatacaatcaaccttagtaaat |
32906628 |
T |
|
| Q |
518 |
ttcccaatctatttctaaactcgccaacaaaagtgattcgtaagaatgtagcaaatacaatcttccagaattgaatgccccaaatgatagttaattt |
614 |
Q |
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| T |
32906627 |
ttcccaatctatttctaaactcgccaacaaaagtgattcgtaagaatgtaacaaatacaatcttccagaattgaatgccccaaatgatagttaattt |
32906531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 11 - 296
Target Start/End: Complemental strand, 32907779 - 32907493
Alignment:
| Q |
11 |
aagaaaattagcagtcaacaagaattttgtggccattcatattgatatagtttcaagttgaaggttcttcaaggatgtggttaaaagagacaactggata |
110 |
Q |
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| T |
32907779 |
aagaaaattagcagtcaacaagaattttgtggccattcatattgatatagtttcaagttgaaggttcttcaaggatgtggttaaaagagacaactggata |
32907680 |
T |
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| Q |
111 |
gtatttataaaacacattcttatgcaacatatcaacaatgaactagtaaaacacaataatacaacatagaaaaccagggatagtttgcattacannnnnn |
210 |
Q |
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| T |
32907679 |
gtatttttaaaacacattcttatgcaacatatcaacaatgaactagtaaaacacaataatacaacatagaaaaccagggatagtttgcattaca-ttttt |
32907581 |
T |
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| Q |
211 |
nnaatgac--aatttattagataaggagagaagtacatagagtacttaaaccacaactcaaggaaagtacaaggggtactcgacccac |
296 |
Q |
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| T |
32907580 |
ttaatgacaaaatttattagataaggagagaagtacatagagtacttaaaccacaactcaaggaaagtacaaggggtactagacccac |
32907493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 221 - 288
Target Start/End: Complemental strand, 7441709 - 7441643
Alignment:
| Q |
221 |
tttattagataaggagagaagtacatagagtacttaaaccacaactcaaggaaagtacaaggggtact |
288 |
Q |
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| T |
7441709 |
tttattaga-aaggagagaagtacaaagagtacttaacccgcaactcaggaaaagtataaggggtact |
7441643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 222 - 296
Target Start/End: Complemental strand, 38956564 - 38956490
Alignment:
| Q |
222 |
ttattagataaggagagaagtacatagagtacttaaaccacaactcaaggaaagtacaaggggtactcgacccac |
296 |
Q |
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|||||| |||| ||||||||||| ||||||||||| |||||| ||||| ||| ||||||||||| ||| ||||| |
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| T |
38956564 |
ttattatataataagagaagtacaaagagtacttaacccacaaatcaagaaaaatacaaggggtattcgccccac |
38956490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 222 - 290
Target Start/End: Original strand, 29566509 - 29566577
Alignment:
| Q |
222 |
ttattagataaggagagaagtacatagagtacttaaaccacaactcaaggaaagtacaaggggtactcg |
290 |
Q |
| |
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||||||||||| |||||||||| || |||||||||| |||||| || || ||| |||||||| |||||| |
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| T |
29566509 |
ttattagataatgagagaagtatatggagtacttaacccacaattcgagaaaattacaagggatactcg |
29566577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 217 - 283
Target Start/End: Original strand, 33810558 - 33810624
Alignment:
| Q |
217 |
acaatttattagataaggagagaagtacatagagtacttaaaccacaactcaaggaaagtacaaggg |
283 |
Q |
| |
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|||||||||||||||| ||||||| |||| | ||||||||| |||||| || | |||||||||||| |
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| T |
33810558 |
acaatttattagataaagagagaattacaaaaagtacttaacccacaaatcgggaaaagtacaaggg |
33810624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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