View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16629_high_51 (Length: 255)
Name: NF16629_high_51
Description: NF16629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16629_high_51 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 10 - 237
Target Start/End: Complemental strand, 38521762 - 38521534
Alignment:
| Q |
10 |
attattctaatcaaatactcgaaggagattgtctctannnnnnn-ctctgaagtgtgatctttactatccattataaaagtgaaagaaggtgtttttaat |
108 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38521762 |
attattctaatgaaatactcgaaggagattgtctctattttttttctctcaagtgtgatctttactatccattataaaagtgaaagaaggtgtttttaat |
38521663 |
T |
|
| Q |
109 |
gttatgannnnnnnnnnnntataattaagggtttggatgccagcacaacaacaaaaactgctagagaagttcctctcctgtaaatgcattctcctnnnnn |
208 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
38521662 |
gttatgaaaagagagagagtataattaagggtttagatgccagcacaacaacaaaaactgctagagaagttcctctcctttaaatgcattctcctaaaaa |
38521563 |
T |
|
| Q |
209 |
nntgtaaatacactctatcaagtgctttg |
237 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
38521562 |
aatgtaaatacactctatcaagtgctttg |
38521534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 112
Target Start/End: Original strand, 36695972 - 36696025
Alignment:
| Q |
59 |
aagtgtgatctttactatccattataaaagtgaaagaaggtgtttttaatgtta |
112 |
Q |
| |
|
|||||||||||| | |||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
36695972 |
aagtgtgatcttcgccgtccattataaaagtgagagaatgtgtttttaatgtta |
36696025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 112
Target Start/End: Original strand, 36712073 - 36712126
Alignment:
| Q |
59 |
aagtgtgatctttactatccattataaaagtgaaagaaggtgtttttaatgtta |
112 |
Q |
| |
|
|||||||||||| | |||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
36712073 |
aagtgtgatcttcgccgtccattataaaagtgagagaatgtgtttttaatgtta |
36712126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University