View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16629_high_55 (Length: 249)
Name: NF16629_high_55
Description: NF16629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16629_high_55 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 83 - 191
Target Start/End: Original strand, 35241264 - 35241373
Alignment:
| Q |
83 |
aaattagagtatatagcaatcttaaaattgaaagtagactaaatatagggaaattacaattgacta-ttttttcctgataacattaagtgccataatctg |
181 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||| | || ||||||||||||||| | ||||| ||||||| |||| ||||||| | |||||||||| |
|
|
| T |
35241264 |
aaattagagtatataacaatcttaaaattggaagtaagcaaagtatagggaaattacagtcgactatttttttcttgattacattaaatcccataatctg |
35241363 |
T |
|
| Q |
182 |
gatttggtac |
191 |
Q |
| |
|
||||||||| |
|
|
| T |
35241364 |
aatttggtac |
35241373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 214 - 249
Target Start/End: Complemental strand, 24820293 - 24820258
Alignment:
| Q |
214 |
cacactatcaaagactttactcattttaaaagaaaa |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
24820293 |
cacactatcaaagactttactcattttaaaagaaaa |
24820258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University