View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16629_high_9 (Length: 500)
Name: NF16629_high_9
Description: NF16629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16629_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 390; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 13 - 430
Target Start/End: Complemental strand, 18168752 - 18168335
Alignment:
| Q |
13 |
atgaagaaactaaatttgatggtagctatgttgagaatgattcattaaggaaaagatgtggcaacaagttgaagaaagctaagttgtcagaaaagtttga |
112 |
Q |
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| T |
18168752 |
atgaagaaactaaatttgatggtagctatgttgagaatgattcattaaggaaaagatgtggcaacaagttgaagaaagctaagttgtcagaaaagtttga |
18168653 |
T |
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| Q |
113 |
cttgaatagacaatgtcagaatgacatggaatcaacaagttcaaaaatgctattagacttaaattgcagtttaaacttttgtgaaccatgaagatggttt |
212 |
Q |
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| T |
18168652 |
cttgaatagacaatgtcagaatgacatggaatcaacaagttcaaaaatgctattagacttaaattgcagtttaaacttttgtgaaccatgaagatggttt |
18168553 |
T |
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| Q |
213 |
atataatttatagatcaaattacatgaaagtatgtagcacaatatcataattataaaagaaaaaatttcatatagtttgtactatattttattaatcttt |
312 |
Q |
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| T |
18168552 |
atataatttatagatcaaattacatgaaagtatgtagcacaatatcataatcataaaagaaaaaatttcatatagtttgtactatattttattaatcttt |
18168453 |
T |
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| Q |
313 |
tcttctcattgtaattgtcacttttagatttcttttattttctgtcttaatataaacgtcactttgtaatataaatgcaacatttattgaatttcacgct |
412 |
Q |
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| T |
18168452 |
tcttcttattgtaattgtcacttttaaatttcttttattttctgtcttaatataaccgtcactttataatacaaatgcaatatttattgaatttcacgct |
18168353 |
T |
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| Q |
413 |
acttgactattctaccaa |
430 |
Q |
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| T |
18168352 |
acttgactattctaccaa |
18168335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 429 - 485
Target Start/End: Complemental strand, 18168135 - 18168079
Alignment:
| Q |
429 |
aaaagagggttatcttatccacttgtttaattagttataattcttaaatgttaatgc |
485 |
Q |
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| T |
18168135 |
aaaagagggttatcttatccacttgtttaattagttatcattcttaaatgttaatgc |
18168079 |
T |
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