View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16629_low_1 (Length: 692)

Name: NF16629_low_1
Description: NF16629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16629_low_1
NF16629_low_1
[»] chr5 (9 HSPs)
chr5 (263-682)||(6578837-6579256)
chr5 (18-116)||(6579402-6579499)
chr5 (144-236)||(6579283-6579375)
chr5 (154-233)||(16404582-16404661)
chr5 (155-232)||(7380120-7380197)
chr5 (167-233)||(16397988-16398054)
chr5 (26-54)||(12369619-12369647)
chr5 (66-106)||(16398102-16398142)
chr5 (170-214)||(28117499-28117543)
[»] chr8 (2 HSPs)
chr8 (453-571)||(34241249-34241367)
chr8 (26-54)||(21127431-21127459)
[»] chr1 (4 HSPs)
chr1 (168-217)||(49355087-49355136)
chr1 (197-233)||(14305545-14305581)
chr1 (26-54)||(39935086-39935114)
chr1 (26-54)||(51238062-51238090)
[»] chr4 (2 HSPs)
chr4 (165-224)||(42292053-42292112)
chr4 (165-231)||(37040807-37040871)
[»] chr3 (5 HSPs)
chr3 (50-96)||(47609571-47609617)
chr3 (61-96)||(41400236-41400271)
chr3 (168-233)||(21138829-21138893)
chr3 (26-54)||(8764054-8764082)
chr3 (26-54)||(12998800-12998828)
[»] scaffold0018 (1 HSPs)
scaffold0018 (155-224)||(32131-32200)
[»] chr2 (1 HSPs)
chr2 (162-224)||(37477172-37477234)
[»] chr7 (2 HSPs)
chr7 (27-55)||(22947468-22947496)
chr7 (26-54)||(30538292-30538320)
[»] chr6 (2 HSPs)
chr6 (27-55)||(28039050-28039078)
chr6 (26-54)||(30240667-30240695)


Alignment Details
Target: chr5 (Bit Score: 404; Significance: 0; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 263 - 682
Target Start/End: Complemental strand, 6579256 - 6578837
Alignment:
Q  263 taaaatcccacaacttcaactctgaatacctcatttgtttagtacatattttgctaattacttttgtttactgttgcaggttgtctttcagtttttgtct 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  6579256 taaaatcccacaacttcaactctgaatacctcatttgtttagtacatattttgctaactacttttgtttactgttgcaggttgtctttcagtttttgtct 6579157  T
Q  363 tctatcagtatcattcatctcatgtttgtgttagatatgttgtttccatccaactctttaatcatatacatactaatggttgagattctttgcagcatcg 462  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6579156 tctttcagtatcattcatctcatgtttgtgttagatatgttgtttccatccaactctttaatcatatacatactaatggttgagattctttgcagcatcg 6579057  T
Q  463 cttttaaaagaaaaattgtcagtcttgggttcatctggtgtcctagcagatcatcagcttcaagctcaattgcaagaacatcatttgaaagggtgagttg 562  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6579056 cttttaaaagaaaaattatcagtcttgggttcatctggtgtcctagcagatcatcagcttcaagctcaattgcaagaacatcatttgaaagggtgagttg 6578957  T
Q  563 aaatctgtaactgggtagatgaaaataggtaaccagtattttatggaaaactagtcgttagattatattttgtttatggaaaatatgtaactcattactt 662  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  6578956 aaatctgtaactgggtagatgaaaataggtaaccagtattttatggaaaactagtcgttagattctattttgtttatggaaaatatgtaactcattactt 6578857  T
Q  663 ttgactcttttctccctttg 682  Q
    ||||||||||||||||||||    
T  6578856 ttgactcttttctccctttg 6578837  T

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Target: chr5; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 18 - 116
Target Start/End: Complemental strand, 6579499 - 6579402
Alignment:
Q  18 aatgttccatgaaaatggcctattaggggtgttttcctaggctcactttataattttagagtatcttagattttctctttggattatatcttatataac 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6579499 aatgttccatgaaaatggcctattaggggtgttttcctaggctcactt-ataattttagagtatcttagattttctctttggattatatcttatataac 6579402  T

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Target: chr5; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 144 - 236
Target Start/End: Complemental strand, 6579375 - 6579283
Alignment:
Q  144 cttgatttaaatctatgcattcctataaatagggattagtatttagtgttttgtatcaagtcactatcaagttagtatcaataatattcacgg 236  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6579375 cttgatttaaatctatgcattcctataaataggggttagtatttagtgttttgtatcaagtcactatcaagttagtatcaataatattcacgg 6579283  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 154 - 233
Target Start/End: Complemental strand, 16404661 - 16404582
Alignment:
Q  154 atctatgcattcctataaatagggattagtatttagtgttttgtatcaagtcactatcaagttagtatcaataatattca 233  Q
    ||||||| || || ||||||||||||||||||||||| ||||| ||||||  |||||  ||| || ||||||||||||||    
T  16404661 atctatgtatccccataaatagggattagtatttagtattttgcatcaagctactattcagtcagcatcaataatattca 16404582  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 232
Target Start/End: Original strand, 7380120 - 7380197
Alignment:
Q  155 tctatgcattcctataaatagggattagtatttagtgttttgtatcaagtcactatcaagttagtatcaataatattc 232  Q
    ||||||||| ||||||||||||||||||| |||||| ||| |||||| || | ||| || | | ||||||||||||||    
T  7380120 tctatgcatccctataaatagggattagtgtttagtctttggtatcaggttagtattaactcattatcaataatattc 7380197  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 167 - 233
Target Start/End: Complemental strand, 16398054 - 16397988
Alignment:
Q  167 tataaatagggattagtatttagtgttttgtatcaagtcactatcaagttagtatcaataatattca 233  Q
    |||||||||||||||||||||||| ||| | ||||||  |||||  | |||||||||| ||||||||    
T  16398054 tataaatagggattagtatttagtctttgggatcaagctactattcaattagtatcaacaatattca 16397988  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 26 - 54
Target Start/End: Original strand, 12369619 - 12369647
Alignment:
Q  26 atgaaaatggcctattaggggtgttttcc 54  Q
    |||||||||||||||||||||||||||||    
T  12369619 atgaaaatggcctattaggggtgttttcc 12369647  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 66 - 106
Target Start/End: Complemental strand, 16398142 - 16398102
Alignment:
Q  66 tataattttagagtatcttagattttctctttggattatat 106  Q
    |||||||||||||||||||||| | |||||| |||||||||    
T  16398142 tataattttagagtatcttagaatatctcttaggattatat 16398102  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 170 - 214
Target Start/End: Original strand, 28117499 - 28117543
Alignment:
Q  170 aaatagggattagtatttagtgttttgtatcaagtcactatcaag 214  Q
    |||||| ||||||| |||||| ||||||||||||||| |||||||    
T  28117499 aaatagagattagtgtttagtcttttgtatcaagtcaatatcaag 28117543  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 453 - 571
Target Start/End: Original strand, 34241249 - 34241367
Alignment:
Q  453 tgcagcatcgcttttaaaagaaaaattgtcagtcttgggttcatctggtgtcctagcagatcatcagcttcaagctcaattgcaagaacatcatttgaaa 552  Q
    |||||||||  || |||| |||||| | |||| |||||| |||||||| ||  ||||||| |||||||||||||||||| | ||||| |||||| | |||    
T  34241249 tgcagcatctgttataaaggaaaaactttcagccttgggatcatctggggtgttagcagaccatcagcttcaagctcaactccaagagcatcatctaaaa 34241348  T
Q  553 gggtgagttgaaatctgta 571  Q
    |||||||||  ||||||||    
T  34241349 gggtgagttagaatctgta 34241367  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 26 - 54
Target Start/End: Complemental strand, 21127459 - 21127431
Alignment:
Q  26 atgaaaatggcctattaggggtgttttcc 54  Q
    |||||||||||||||||||||||||||||    
T  21127459 atgaaaatggcctattaggggtgttttcc 21127431  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 168 - 217
Target Start/End: Original strand, 49355087 - 49355136
Alignment:
Q  168 ataaatagggattagtatttagtgttttgtatcaagtcactatcaagtta 217  Q
    ||||||||||||||||||||||| |||||||| |||||| ||||||||||    
T  49355087 ataaatagggattagtatttagtcttttgtattaagtcaatatcaagtta 49355136  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 197 - 233
Target Start/End: Original strand, 14305545 - 14305581
Alignment:
Q  197 tatcaagtcactatcaagttagtatcaataatattca 233  Q
    |||||||||| |||||||||| |||||||||||||||    
T  14305545 tatcaagtcaatatcaagttattatcaataatattca 14305581  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 26 - 54
Target Start/End: Original strand, 39935086 - 39935114
Alignment:
Q  26 atgaaaatggcctattaggggtgttttcc 54  Q
    |||||||||||||||||||||||||||||    
T  39935086 atgaaaatggcctattaggggtgttttcc 39935114  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 26 - 54
Target Start/End: Complemental strand, 51238090 - 51238062
Alignment:
Q  26 atgaaaatggcctattaggggtgttttcc 54  Q
    |||||||||||||||||||||||||||||    
T  51238090 atgaaaatggcctattaggggtgttttcc 51238062  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 165 - 224
Target Start/End: Complemental strand, 42292112 - 42292053
Alignment:
Q  165 cctataaatagggattagtatttagtgttttgtatcaagtcactatcaagttagtatcaa 224  Q
    ||||||||||||| ||||| |||||| ||||||||| ||||| ||| |||||||||||||    
T  42292112 cctataaataggggttagtttttagtcttttgtatctagtcattattaagttagtatcaa 42292053  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 231
Target Start/End: Complemental strand, 37040871 - 37040807
Alignment:
Q  165 cctataaatagggattagtatttagtgttttgtatcaagtcactatcaagttagtatcaataatatt 231  Q
    ||||||||||| ||||||| |||||| ||||||||||||| | ||||||  || |||||||||||||    
T  37040871 cctataaatagagattagtgtttagtcttttgtatcaagttagtatcaa--tattatcaataatatt 37040807  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 96
Target Start/End: Complemental strand, 47609617 - 47609571
Alignment:
Q  50 tttcctaggctcactttataattttagagtatcttagattttctctt 96  Q
    ||||||||| ||| |||||||||||||||||||||||||| ||||||    
T  47609617 tttcctaggatcaatttataattttagagtatcttagattatctctt 47609571  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 96
Target Start/End: Original strand, 41400236 - 41400271
Alignment:
Q  61 cactttataattttagagtatcttagattttctctt 96  Q
    ||||||||||||||||||||||||||||| ||||||    
T  41400236 cactttataattttagagtatcttagattatctctt 41400271  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 233
Target Start/End: Complemental strand, 21138893 - 21138829
Alignment:
Q  168 ataaatagggattagtatttagtgttttgtatcaagtcactatcaagttagtatcaataatattca 233  Q
    |||||||||||||||| || ||| ||||||||||||||  |||||||||| || ||||| ||||||    
T  21138893 ataaatagggattagt-ttcagtcttttgtatcaagtctgtatcaagttattaacaatagtattca 21138829  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 26 - 54
Target Start/End: Original strand, 8764054 - 8764082
Alignment:
Q  26 atgaaaatggcctattaggggtgttttcc 54  Q
    |||||||||||||||||||||||||||||    
T  8764054 atgaaaatggcctattaggggtgttttcc 8764082  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 26 - 54
Target Start/End: Complemental strand, 12998828 - 12998800
Alignment:
Q  26 atgaaaatggcctattaggggtgttttcc 54  Q
    |||||||||||||||||||||||||||||    
T  12998828 atgaaaatggcctattaggggtgttttcc 12998800  T

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Target: scaffold0018 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 224
Target Start/End: Original strand, 32131 - 32200
Alignment:
Q  155 tctatgcattcctataaatagggattagtatttagtgttttgtatcaagtcactatcaagttagtatcaa 224  Q
    |||||| || |||||||||||||||||||||| ||| |||||||||||   |||||||||| | ||||||    
T  32131 tctatgtatccctataaatagggattagtattcagttttttgtatcaacctactatcaagtcattatcaa 32200  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 162 - 224
Target Start/End: Complemental strand, 37477234 - 37477172
Alignment:
Q  162 attcctataaatagggattagtatttagtgttttgtatcaagtcactatcaagttagtatcaa 224  Q
    ||||||||||||||| ||  ||||||||| |||||||| |||  |||||| ||||||||||||    
T  37477234 attcctataaataggaatatgtatttagtcttttgtattaagctactatccagttagtatcaa 37477172  T

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Target: chr7 (Bit Score: 29; Significance: 0.000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 27 - 55
Target Start/End: Complemental strand, 22947496 - 22947468
Alignment:
Q  27 tgaaaatggcctattaggggtgttttcct 55  Q
    |||||||||||||||||||||||||||||    
T  22947496 tgaaaatggcctattaggggtgttttcct 22947468  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 26 - 54
Target Start/End: Original strand, 30538292 - 30538320
Alignment:
Q  26 atgaaaatggcctattaggggtgttttcc 54  Q
    |||||||||||||||||||||||||||||    
T  30538292 atgaaaatggcctattaggggtgttttcc 30538320  T

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Target: chr6 (Bit Score: 29; Significance: 0.000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 27 - 55
Target Start/End: Original strand, 28039050 - 28039078
Alignment:
Q  27 tgaaaatggcctattaggggtgttttcct 55  Q
    |||||||||||||||||||||||||||||    
T  28039050 tgaaaatggcctattaggggtgttttcct 28039078  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 26 - 54
Target Start/End: Complemental strand, 30240695 - 30240667
Alignment:
Q  26 atgaaaatggcctattaggggtgttttcc 54  Q
    |||||||||||||||||||||||||||||    
T  30240695 atgaaaatggcctattaggggtgttttcc 30240667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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