View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16629_low_10 (Length: 499)
Name: NF16629_low_10
Description: NF16629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16629_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 91 - 418
Target Start/End: Original strand, 6112766 - 6113093
Alignment:
| Q |
91 |
ttcattgattcttcgatttcaatcgcttaatcgttaatcatatttgtattttcgcgatttcgcaattcatatgtatattttctgtttcatttacctttct |
190 |
Q |
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| T |
6112766 |
ttcattgattcttcaatttcaatcgcttaatccttaatcatattcgtattttcgcgatttcgcaattcatatgtatattttctgtttcatttacctttct |
6112865 |
T |
|
| Q |
191 |
aggtttttcattcaattttatcgatttcgtcctatatttcgatatttataatcataatcgtcagaaaaacgattattctttgttttcgattatttagatt |
290 |
Q |
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| T |
6112866 |
aggtttttcattcaattttatcgatttcttactatatttcgatatttataatcataatcgtcagaaaaactgttgttctttgttttcgatgattcagatt |
6112965 |
T |
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| Q |
291 |
tcacatgagctcgtgtgtttgtttatatattttagtgtttctaagtttcttgtttatttgatttagcgtacttaaggtcttttgtttaattgttatcctt |
390 |
Q |
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||||||| ||| ||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
6112966 |
tcacatgcactcatgtgtttgtttatgtattatcgtgtttctaagtttcttgtttatttgatttagcgtacttaaggtcttttgtttaactggtatcctt |
6113065 |
T |
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| Q |
391 |
atccgtccattcattttttaaatttatt |
418 |
Q |
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|||| ||||||||||| ||||||||||| |
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| T |
6113066 |
atccttccattcatttgttaaatttatt |
6113093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 77 - 203
Target Start/End: Original strand, 28918938 - 28919076
Alignment:
| Q |
77 |
gccgctacggtactttcattgattcttcgatttcaatcgcttaat---cgttaatcatatttgtattttcgcgat--------ttcgcaattcatatgta |
165 |
Q |
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| T |
28918938 |
gccgctacggtaatttcatcgattcttcaatttcaattgcttaataatcgttaataatattcgtattttcgcgatttcgcaaattcgcaatttatatgta |
28919037 |
T |
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| Q |
166 |
ta-ttttctgtttcatttacctttctaggtttttcattc |
203 |
Q |
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| T |
28919038 |
tatttttttgtttgatttacctttctaggtttttgattc |
28919076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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