View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16629_low_12 (Length: 483)
Name: NF16629_low_12
Description: NF16629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16629_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 19 - 466
Target Start/End: Original strand, 36621301 - 36621749
Alignment:
| Q |
19 |
gtaaactgtaattcatcacggaaagaaattgaactatagttgcagagatcattgaccgaactgtatgaacaaagactatacctcgtcttcttttatattt |
118 |
Q |
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| T |
36621301 |
gtaaactgtaattcatcacggaaagaaattgaactatagttgcagagatcattgaccgaactgtatgaacaaagactatacctcatcttcttttatattt |
36621400 |
T |
|
| Q |
119 |
ctatattggtttctcttattacaagctcaggtggaggagtgaaacccagattagagggtctaatttatgaacttctaatgaatgaatacattaaacaatt |
218 |
Q |
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| T |
36621401 |
ttatattggtttctcttattacaagctcaggtggaggagtgaaacccagattagagggtctagtttatgaacttctaataaatgaatacattaaacaatt |
36621500 |
T |
|
| Q |
219 |
tccaacaatttgatgggtaattatctttcact-nnnnnnnnctgcacttaaggaaatatgttggcgataatttttataaatatttgtcaatgacttgata |
317 |
Q |
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| T |
36621501 |
tccaacaatttgatgggtaattatctttcactaaaaaaaaactgcacttaaggaaatatgttggcgataatttttataaatatttgtcaatgacttgata |
36621600 |
T |
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| Q |
318 |
attgttttggtttgtttgtgtctctcatagcagaatgaaaatatgtttcactatttgttgattaattaccttataatgtcttaattagaaaaatatcatt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36621601 |
attgttttggtttgtttgtgtctctcatagcagaatgaaaatatgtttcactatttgttgattaattaccttataatgtcttaattagaaaaatatcatt |
36621700 |
T |
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| Q |
418 |
caactactagtccatcaaaacaaaatcatgcaactacatgtactatatt |
466 |
Q |
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| T |
36621701 |
caactactagtccatcaaaacaaaatcatgcaactacatgtgctatatt |
36621749 |
T |
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