View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16629_low_13 (Length: 478)
Name: NF16629_low_13
Description: NF16629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16629_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 410; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 13 - 459
Target Start/End: Original strand, 4709982 - 4710430
Alignment:
| Q |
13 |
atgaatgttcaagtattaacatgagaatgaatcagagttatgagtatacaattcttatgcattaaaaatctgaaaaatcatgtgcatgatttaaatcaca |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4709982 |
atgaatgttcaagtattaacatgagaatgaatcagagttatgagtatacaattcttatgcattaaaaatctgaaaaatcatgtgcatgatttaaatcaca |
4710081 |
T |
|
| Q |
113 |
ttattaggtggattcgaataatcattttttatcaagttgatttgagtcacattacgtggtcgatttaaattatgactctctgatgaagaaacatgatcca |
212 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
4710082 |
ttattaggtggattcgaataatcactttttatcaagttgatttgagtcacattacgtggtcgatttaaattatgactctctgattaagaaacatgatcca |
4710181 |
T |
|
| Q |
213 |
aaaatacaaaggtgatttgaatcgctaactaggttgattcgaatcacaactttttggtttatataggagtgttatgccagtatagatgcacactctaatt |
312 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |
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| T |
4710182 |
aaaatacaaaggtgatttgaatcgctaactaggttgattcgaatcacaactttttggtttatataggagtgtgatgccagtatagatgggcactctaatt |
4710281 |
T |
|
| Q |
313 |
tcgtaaatgaataattt--tatccaaatgtataaaggcatgcgcagatctatgaaaaagagatgttgtgcaagtatctacaagacctagattattaatag |
410 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4710282 |
tcgtaaatgaataattttgtatccaaatgtataaaggcatgcgcggatctatgaaaaagagatgttgtgcaagtatctacaagacctagattattaatag |
4710381 |
T |
|
| Q |
411 |
gccctccaagcataatgaaaattccatctagggttgctcccctggatag |
459 |
Q |
| |
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| T |
4710382 |
gtcctccaagcataatgaaaattccatctagggttgctcccctggatag |
4710430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 338 - 450
Target Start/End: Complemental strand, 6949012 - 6948900
Alignment:
| Q |
338 |
tgtataaaggcatgcgcagatctatgaaaaagagatgttgtgcaagtatctacaagacctagattattaataggccctccaagcataatgaaaattccat |
437 |
Q |
| |
|
|||||||||||| |||| |||||||||| | |||| ||||| | |||||||||| |||||| ||||| ||||||| ||||||||| ||||||||| | |
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|
| T |
6949012 |
tgtataaaggcaggcgcggatctatgaataggagaggttgtcccagtatctacaggacctaaattatcaataggctctccaagcacgttgaaaattcgac |
6948913 |
T |
|
| Q |
438 |
ctagggttgctcc |
450 |
Q |
| |
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||||||||||||| |
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| T |
6948912 |
ctagggttgctcc |
6948900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 338 - 450
Target Start/End: Original strand, 12335723 - 12335835
Alignment:
| Q |
338 |
tgtataaaggcatgcgcagatctatgaaaaagagatgttgtgcaagtatctacaagacctagattattaataggccctccaagcataatgaaaattccat |
437 |
Q |
| |
|
|||||||||||| | ||||||||||||| | |||| ||||||| |||||||||| ||||| ||||| ||||||| ||||||||| ||||||||| | |
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|
| T |
12335723 |
tgtataaaggcacgtgcagatctatgaataggagaggttgtgccagtatctacagtacctaaattatcaataggctctccaagcacgttgaaaattcgac |
12335822 |
T |
|
| Q |
438 |
ctagggttgctcc |
450 |
Q |
| |
|
||||||||||||| |
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|
| T |
12335823 |
ctagggttgctcc |
12335835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 338 - 450
Target Start/End: Original strand, 12339909 - 12340021
Alignment:
| Q |
338 |
tgtataaaggcatgcgcagatctatgaaaaagagatgttgtgcaagtatctacaagacctagattattaataggccctccaagcataatgaaaattccat |
437 |
Q |
| |
|
|||||||||||| |||| |||||||||| | |||| ||||| | |||||||||| |||||| ||||| ||||||| ||||||||| ||||||||| | |
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|
| T |
12339909 |
tgtataaaggcaggcgcggatctatgaataggagaggttgtcccagtatctacaggacctaaattatcaataggctctccaagcacgttgaaaattcgac |
12340008 |
T |
|
| Q |
438 |
ctagggttgctcc |
450 |
Q |
| |
|
||||||||||||| |
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|
| T |
12340009 |
ctagggttgctcc |
12340021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 338 - 450
Target Start/End: Original strand, 48938688 - 48938800
Alignment:
| Q |
338 |
tgtataaaggcatgcgcagatctatgaaaaagagatgttgtgcaagtatctacaagacctagattattaataggccctccaagcataatgaaaattccat |
437 |
Q |
| |
|
|||||||||||| |||| |||||||||| | |||| ||||| | |||||||||| |||||| ||||| ||||||| ||||||||| ||||||||| | |
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|
| T |
48938688 |
tgtataaaggcaggcgcggatctatgaataggagaggttgtcccagtatctacaggacctaaattatcaataggctctccaagcacgttgaaaattcgac |
48938787 |
T |
|
| Q |
438 |
ctagggttgctcc |
450 |
Q |
| |
|
||||||||||||| |
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|
| T |
48938788 |
ctagggttgctcc |
48938800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 338 - 450
Target Start/End: Complemental strand, 19679440 - 19679328
Alignment:
| Q |
338 |
tgtataaaggcatgcgcagatctatgaaaaagagatgttgtgcaagtatctacaagacctagattattaataggccctccaagcataatgaaaattccat |
437 |
Q |
| |
|
|||||||||||| |||| |||||||||| | |||| ||||| | |||||||||| |||||| ||||| ||||||| ||||||||| ||||||||| | |
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|
| T |
19679440 |
tgtataaaggcaggcgcggatctatgaataggagaggttgtcccagtatctacaggacctaaattatcaataggctctccaagcacgttgaaaattcgac |
19679341 |
T |
|
| Q |
438 |
ctagggttgctcc |
450 |
Q |
| |
|
||||||||||||| |
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|
| T |
19679340 |
ctagggttgctcc |
19679328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 338 - 450
Target Start/End: Original strand, 2549876 - 2549988
Alignment:
| Q |
338 |
tgtataaaggcatgcgcagatctatgaaaaagagatgttgtgcaagtatctacaagacctagattattaataggccctccaagcataatgaaaattccat |
437 |
Q |
| |
|
|||||||||||| |||| |||||||||| | |||| ||||| | |||||||||| |||||| ||||| ||||||| ||||||||| ||||||||| | |
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|
| T |
2549876 |
tgtataaaggcaggcgcggatctatgaataggagaggttgtcccagtatctacaggacctaaattatcaataggctctccaagcacgttgaaaattcgac |
2549975 |
T |
|
| Q |
438 |
ctagggttgctcc |
450 |
Q |
| |
|
||||||||||||| |
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|
| T |
2549976 |
ctagggttgctcc |
2549988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 338 - 450
Target Start/End: Original strand, 18189077 - 18189189
Alignment:
| Q |
338 |
tgtataaaggcatgcgcagatctatgaaaaagagatgttgtgcaagtatctacaagacctagattattaataggccctccaagcataatgaaaattccat |
437 |
Q |
| |
|
|||||||||||| |||| |||||||||| | |||| ||||| | |||||||||| |||||| ||||| ||||||| ||||||||| ||||||||| | |
|
|
| T |
18189077 |
tgtataaaggcaggcgcggatctatgaataggagaggttgtcccagtatctacaggacctaaattatcaataggctctccaagcacgttgaaaattcgac |
18189176 |
T |
|
| Q |
438 |
ctagggttgctcc |
450 |
Q |
| |
|
||||||||||||| |
|
|
| T |
18189177 |
ctagggttgctcc |
18189189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 338 - 450
Target Start/End: Complemental strand, 13239852 - 13239740
Alignment:
| Q |
338 |
tgtataaaggcatgcgcagatctatgaaaaagagatgttgtgcaagtatctacaagacctagattattaataggccctccaagcataatgaaaattccat |
437 |
Q |
| |
|
|||||||||||| |||| |||||||||| | |||| ||||| | |||||||||| |||||| ||||| ||||||| ||||||||| ||||||||| | |
|
|
| T |
13239852 |
tgtataaaggcaggcgcggatctatgaataggagaggttgtcccagtatctacaggacctaaattatcaataggctctccaagcacgttgaaaattcgac |
13239753 |
T |
|
| Q |
438 |
ctagggttgctcc |
450 |
Q |
| |
|
||||||||||||| |
|
|
| T |
13239752 |
ctagggttgctcc |
13239740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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