View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16629_low_14 (Length: 468)
Name: NF16629_low_14
Description: NF16629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16629_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 421; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 1 - 457
Target Start/End: Original strand, 31727002 - 31727458
Alignment:
| Q |
1 |
ttgggtggatcattgttccttgtcaaattgttttgatggtttgattgatgttgttcatggatcaacggctgttactatttctaataattatatgacccgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31727002 |
ttgggtggatcattgttccttgtcaaattgttttgatggtttcattgatgttgttcatggatcaacggctgttactatttctaataattatatgacccgt |
31727101 |
T |
|
| Q |
101 |
cataacaaagttatgctctttggtcatattgattcctatgaagaggacaaaaatatgcaagctactatagcttttaaccattttggagaagggcttgggg |
200 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31727102 |
cataacaaagttatgctctttggtcatagtgattcctatgaagaggacaaaaatatgcaagctactatagcttttaaccattttggagaagggcttgggg |
31727201 |
T |
|
| Q |
201 |
gaagaatgccaaggtaggtttattagttaatttttctctgccacaataattaagccctacttgccatttgttatatatttttactcttattcctaacagt |
300 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31727202 |
gaagaatgccaaggtaggtttattagttaatttttctctgccacagtaattaagccctacttgccatttgttatatatttttactcttattcctaacagt |
31727301 |
T |
|
| Q |
301 |
ttgaaattttttctacacaaatgttgctgatgcaggttcggatactttcatgtggtgaacaatgattacacacattggcgacaatatgcaatcagtggaa |
400 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
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| T |
31727302 |
ttgaaattttttctacacgaatgttgcagatgcaggttcggatactttcatgtggtgaacaatgattacacacattggcaacaatatgcaatcggtggaa |
31727401 |
T |
|
| Q |
401 |
gttcgtccccaactatttttagtcaaggcaatagatttctaactccagatgatgatg |
457 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
31727402 |
gttcgtcccgaactatttttagtcaaggcaatagatttctagctccagatgatgatg |
31727458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 457
Target Start/End: Original strand, 39082365 - 39082835
Alignment:
| Q |
1 |
ttgggtggatcattgttccttgtcaaattgttttgatggtttgattgatgttgttcatggatcaacggctgttactatttctaataattatatgacccgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
39082365 |
ttgggtggatcattgttccttgtcaaattgttttgacggtttgattgatgttgttcatggatcaacggctgttactatttctaataattatatgacacgt |
39082464 |
T |
|
| Q |
101 |
cataacaaagttatgctctttggtcatattgattcctatgaagaggacaaaaatatgcaagctactatagcttttaaccattttggagaagggcttgggg |
200 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39082465 |
cataacaaagttatgctctttggtcatagtgattcctatgaaggggacaaaaatatgcaagctactatagcttttaaccattttggagaagggcttgggg |
39082564 |
T |
|
| Q |
201 |
gaagaatgccaaggtaggtttattagttaatttttctctgccacaataattaagccctacttgccatttgttatatatttttactc-------------- |
286 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39082565 |
gaagaatgccaaggtttgtaaattagttaatttttctctgccacaataattaagccctacttgccatttgttatatatttttactctttattttgagaga |
39082664 |
T |
|
| Q |
287 |
ttattcctaacagtttgaaattttttctacacaaatgttgctgatgcaggttcggatactttcatgtggtgaacaatgattacacacattggcgacaata |
386 |
Q |
| |
|
||| ||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||| |||||||||| |||||| |
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|
| T |
39082665 |
ttagtcctaacagtttgaatatttttctacacaaatgttgcaggtgcaggttcggatactttcatgtggtcaacaatgattatacacattggcaacaata |
39082764 |
T |
|
| Q |
387 |
tgcaatcagtggaagttcgtccccaactatttttagtcaaggcaatagatttctaactccagatgatgatg |
457 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
39082765 |
tgcaattggtggaagttcgtccccaactatttttagtcaaggcaatagatttctagctccagatgatgatg |
39082835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 34 - 133
Target Start/End: Original strand, 39075949 - 39076048
Alignment:
| Q |
34 |
tgatggtttgattgatgttgttcatggatcaacggctgttactatttctaataattatatgacccgtcataacaaagttatgctctttggtcatattgat |
133 |
Q |
| |
|
|||||| || ||||||||| |||||||||| || ||| |||||||||||||||||| ||||| | |||||| || |||||||| || ||||||| |||| |
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|
| T |
39075949 |
tgatggattaattgatgttattcatggatctacagctattactatttctaataatttcatgactcatcataataaggttatgcttttgggtcatagtgat |
39076048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 378
Target Start/End: Original strand, 39076217 - 39076255
Alignment:
| Q |
340 |
ggatactttcatgtggtgaacaatgattacacacattgg |
378 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||| |
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|
| T |
39076217 |
ggatattttcatgtggtgaacaatgactacacacattgg |
39076255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 8 - 216
Target Start/End: Complemental strand, 7593460 - 7593252
Alignment:
| Q |
8 |
gatcattgttccttgtcaaattgttttgatggtttgattgatgttgttcatggatcaacggctgttactatttctaataattatatgacccgtcataaca |
107 |
Q |
| |
|
||||||||||| ||||| |||||| ||||||| | ||||||||| | |||||||| | ||| |||||||||| ||||| |||||||| | |||| ||| |
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|
| T |
7593460 |
gatcattgttctttgtctaattgtcgtgatggtcttattgatgttatacatggatctaatgctattactatttcaaataactatatgactcatcatgaca |
7593361 |
T |
|
| Q |
108 |
aagttatgctctttggtcatattgattcctatgaagaggacaaaaatatgcaagctactatagcttttaaccattttggagaagggcttgggggaagaat |
207 |
Q |
| |
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|||||||||| || || |||| |||||| ||| | | ||||| | ||||||| |||||| |||||||| |||||||| |||||||||| |||||| |
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|
| T |
7593360 |
aagttatgcttttgggacatagtgattcttatacacaagacaaggacatgcaagttactattgcttttaatcattttggtgaagggcttgtccaaagaat |
7593261 |
T |
|
| Q |
208 |
gccaaggta |
216 |
Q |
| |
|
||||||||| |
|
|
| T |
7593260 |
gccaaggta |
7593252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 346 - 378
Target Start/End: Complemental strand, 7592294 - 7592262
Alignment:
| Q |
346 |
tttcatgtggtgaacaatgattacacacattgg |
378 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
7592294 |
tttcatgtggtgaacaatgattacacacattgg |
7592262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 43131350 - 43131565
Alignment:
| Q |
1 |
ttgggtggatcattgttccttgtcaaattgttttgatggtttgattgatgttgttcatggatcaacggctgttactatttctaataattatatgacccgt |
100 |
Q |
| |
|
|||||||||||||||||| ||||| || ||| ||||||||||||||||| | ||||||| || || || |||| || ||||| ||||||||||| | |
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|
| T |
43131350 |
ttgggtggatcattgttctttgtctaactgtaatgatggtttgattgatgctattcatgggtccactgcaattaccatctctaacaattatatgactcac |
43131449 |
T |
|
| Q |
101 |
cataacaaagttatgctctttggtcatattgattcctatgaagaggacaaaaatatgcaagctactatagcttttaaccattttggagaagggcttgggg |
200 |
Q |
| |
|
||| | ||||||||||| || ||||||| |||| | ||| | ||||| || ||||||| |||||| |||||||| || ||||| ||||| |||| |
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|
| T |
43131450 |
catgataaagttatgcttttgggtcatagtgatacttatactcaagacaagaacatgcaagttactattgcttttaatcactttggtgaaggccttgttc |
43131549 |
T |
|
| Q |
201 |
gaagaatgccaaggta |
216 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
43131550 |
aaagaatgccaaggta |
43131565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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