View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16629_low_15 (Length: 464)

Name: NF16629_low_15
Description: NF16629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16629_low_15
NF16629_low_15
[»] chr4 (5 HSPs)
chr4 (15-82)||(52528864-52528931)
chr4 (206-287)||(1678430-1678511)
chr4 (15-86)||(26720573-26720645)
chr4 (240-287)||(14586853-14586900)
chr4 (213-255)||(52529105-52529147)
[»] chr8 (4 HSPs)
chr8 (213-287)||(13863801-13863875)
chr8 (15-82)||(13863560-13863628)
chr8 (190-287)||(22781766-22781864)
chr8 (238-287)||(42313947-42313996)
[»] chr1 (4 HSPs)
chr1 (22-86)||(45118251-45118316)
chr1 (147-277)||(45118420-45118551)
chr1 (208-280)||(19768677-19768750)
chr1 (216-252)||(39076227-39076263)
[»] chr5 (1 HSPs)
chr5 (208-287)||(30463760-30463838)
[»] chr2 (2 HSPs)
chr2 (22-86)||(2985721-2985786)
chr2 (147-277)||(2985484-2985615)
[»] chr7 (1 HSPs)
chr7 (216-287)||(13761791-13761861)
[»] scaffold1095 (1 HSPs)
scaffold1095 (212-285)||(524-595)
[»] scaffold0036 (1 HSPs)
scaffold0036 (209-287)||(97747-97824)
[»] chr6 (2 HSPs)
chr6 (225-287)||(20910682-20910744)
chr6 (225-287)||(20925130-20925192)
[»] scaffold0005 (1 HSPs)
scaffold0005 (240-287)||(230474-230521)
[»] chr3 (1 HSPs)
chr3 (224-287)||(52126895-52126958)


Alignment Details
Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 15 - 82
Target Start/End: Original strand, 52528864 - 52528931
Alignment:
Q  15 cagagagagtagatgggaaggaaaggtgggttgggaaattgagaaggggaaaaaatgacaatagagaa 82  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  52528864 cagagagagtagatgggaaggaaacgtggattgggaaattgagaaggggaaaaaatgacaatagagaa 52528931  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 206 - 287
Target Start/End: Original strand, 1678430 - 1678511
Alignment:
Q  206 ggattcaaatttcaaatttttggagccaattatttaggattagggttatggaattaggggttgcatgtttgctaggattaga 287  Q
    ||||||||||||||||||||  ||||||||| |||||| ||| |||| ||||||||||| ||||||||||||||||||||||    
T  1678430 ggattcaaatttcaaattttgagagccaattttttaggtttaaggttgtggaattagggtttgcatgtttgctaggattaga 1678511  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 15 - 86
Target Start/End: Complemental strand, 26720645 - 26720573
Alignment:
Q  15 cagagagagtagatgggaaggaaaggtgggttgggaaattgagaaggggaa-aaaatgacaatagagaaggat 86  Q
    |||||| ||||||||||||||||| |||| ||||||||||||||||||||| |||||||||| | ||||||||    
T  26720645 cagagaaagtagatgggaaggaaacgtggattgggaaattgagaaggggaaaaaaatgacaacaaagaaggat 26720573  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 287
Target Start/End: Original strand, 14586853 - 14586900
Alignment:
Q  240 taggattagggttatggaattaggggttgcatgtttgctaggattaga 287  Q
    |||| ||||||||||| |||||||  ||||||||||||||||||||||    
T  14586853 taggtttagggttatgcaattaggatttgcatgtttgctaggattaga 14586900  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 255
Target Start/End: Original strand, 52529105 - 52529147
Alignment:
Q  213 aatttcaaatttttggagccaattatttaggattagggttatg 255  Q
    |||||||||||||||||| ||||| |||||| |||||||||||    
T  52529105 aatttcaaatttttggagtcaattttttaggtttagggttatg 52529147  T

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Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 213 - 287
Target Start/End: Original strand, 13863801 - 13863875
Alignment:
Q  213 aatttcaaatttttggagccaattatttaggattagggttatggaattaggggttgcatgtttgctaggattaga 287  Q
    |||||||||||||||||||||||| |||||| |||||||||||||||||||| ||| |||||| |||||||||||    
T  13863801 aatttcaaatttttggagccaattttttaggtttagggttatggaattagggtttgtatgtttcctaggattaga 13863875  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 15 - 82
Target Start/End: Original strand, 13863560 - 13863628
Alignment:
Q  15 cagagagagtagatgggaaggaaaggtgggttgggaaattgagaagggg-aaaaaatgacaatagagaa 82  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||| |||||    
T  13863560 cagagagagtagatgggaaggaaacgtggattgggaaattgagaaggggaaaaaaatgacaattgagaa 13863628  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 190 - 287
Target Start/End: Original strand, 22781766 - 22781864
Alignment:
Q  190 ctcataacgaaaaggtg-gattcaaatttcaaatttttggagccaattatttaggattagggttatggaattaggggttgcatgtttgctaggattaga 287  Q
    ||||||| ||||| ||| ||||||||||| ||||||  |||||||||| |||||| ||| |||| ||||||||||| ||||||||||| ||||||||||    
T  22781766 ctcataatgaaaatgtgagattcaaatttgaaatttcgggagccaattttttaggtttaaggttgtggaattagggtttgcatgtttgttaggattaga 22781864  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 238 - 287
Target Start/End: Original strand, 42313947 - 42313996
Alignment:
Q  238 tttaggattagggttatggaattaggggttgcatgtttgctaggattaga 287  Q
    |||||||||||||||| | |||||||| |||||||||||| |||||||||    
T  42313947 tttaggattagggttaggcaattagggtttgcatgtttgccaggattaga 42313996  T

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Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 45118251 - 45118316
Alignment:
Q  22 agtagatgggaaggaaaggtgggttgggaaattgagaaggggaaaaaa-tgacaatagagaaggat 86  Q
    ||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||    
T  45118251 agtagatgggaaggaaacgtggattgggaaattgagaaggggaaaaaagtgacaatagagaaggat 45118316  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 147 - 277
Target Start/End: Original strand, 45118420 - 45118551
Alignment:
Q  147 caatgttaggagacagtgtaatataccattgggaattggcgagctcataacgaaaaggtgg-attcaaatttcaaatttttggagcc-aattatttagga 244  Q
    ||||||||| ||| |||| |||  | ||||||||||  || ||||||||| ||||| |||| ||| ||||||||||| ||||||||| || | ||||||     
T  45118420 caatgttagaagatagtggaatgcatcattgggaatacgcaagctcataatgaaaatgtgggatttaaatttcaaatatttggagccaaaatttttaggt 45118519  T
Q  245 ttagggttatggaattaggggttgcatgtttgc 277  Q
    |||||||| |||||||||||   ||||||||||    
T  45118520 ttagggtt-tggaattagggtaagcatgtttgc 45118551  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 280
Target Start/End: Complemental strand, 19768750 - 19768677
Alignment:
Q  208 attcaaatttcaaatttttggagcca-attatttaggattagggttatggaattaggggttgcatgtttgctag 280  Q
    |||||||||||||||||||| |||||  || |||||||||||| ||  | |||||||| |||||| ||||||||    
T  19768750 attcaaatttcaaatttttgaagccattttttttaggattaggatttggcaattagggtttgcatatttgctag 19768677  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 252
Target Start/End: Original strand, 39076227 - 39076263
Alignment:
Q  216 ttcaaatttttggagccaattatttaggattagggtt 252  Q
    |||||||||||||||||| || |||||||||||||||    
T  39076227 ttcaaatttttggagccatttttttaggattagggtt 39076263  T

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Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 208 - 287
Target Start/End: Complemental strand, 30463838 - 30463760
Alignment:
Q  208 attcaaatttcaaatttttggagccaattatttaggattagggttatggaattaggggttgcatgtttgctaggattaga 287  Q
    |||||||||||||||||  |||||||||| |||||| ||||| || ||||||||||| ||||||||||||||||||||||    
T  30463838 attcaaatttcaaatttg-ggagccaattttttaggtttaggattgtggaattagggtttgcatgtttgctaggattaga 30463760  T

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Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 2985786 - 2985721
Alignment:
Q  22 agtagatgggaaggaaaggtgggttgggaaattgagaaggggaaaaaa-tgacaatagagaaggat 86  Q
    |||||||||||||||||  ||| ||||||||||||||||||||||||| |||||||||||||||||    
T  2985786 agtagatgggaaggaaacatggattgggaaattgagaaggggaaaaaagtgacaatagagaaggat 2985721  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 147 - 277
Target Start/End: Complemental strand, 2985615 - 2985484
Alignment:
Q  147 caatgttaggagacagtgtaatataccattgggaattggcgagctcataacgaaaaggtgg-attcaaatttcaaatttttggagcc-aattatttagga 244  Q
    ||||||||| ||| |||| |||  | ||||||||||  || ||||||||| ||||| |||| ||| ||||||||||| ||||||||| || | ||||||     
T  2985615 caatgttagaagatagtggaatgcatcattgggaatacgcaagctcataatgaaaatgtgggatttaaatttcaaatatttggagccaaaatttttaggt 2985516  T
Q  245 ttagggttatggaattaggggttgcatgtttgc 277  Q
    |||||||| |||||||||||   ||||||||||    
T  2985515 ttagggtt-tggaattagggtaagcatgtttgc 2985484  T

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Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 216 - 287
Target Start/End: Complemental strand, 13761861 - 13761791
Alignment:
Q  216 ttcaaatttttggagccaattatttaggattagggttatggaattaggggttgcatgtttgctaggattaga 287  Q
    |||||||||||| ||||| || |||||||||||| ||||| |||||||| ||||||||||||||||||||||    
T  13761861 ttcaaatttttgaagccattt-tttaggattaggtttatgcaattagggtttgcatgtttgctaggattaga 13761791  T

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Target: scaffold1095 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold1095
Description:

Target: scaffold1095; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 212 - 285
Target Start/End: Original strand, 524 - 595
Alignment:
Q  212 aaatttcaaatttttggagccaattatttaggattagggttatggaattaggggttgcatgtttgctaggatta 285  Q
    ||||||||||||||  ||||||||| |||| ||||||||||||  |||||||| ||||||||||||||||||||    
T  524 aaatttcaaatttt--gagccaattttttaagattagggttatacaattagggtttgcatgtttgctaggatta 595  T

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Target: scaffold0036 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 209 - 287
Target Start/End: Complemental strand, 97824 - 97747
Alignment:
Q  209 ttcaaatttcaaatttttggagccaattatttaggattagggttatggaattaggggttgcatgtttgctaggattaga 287  Q
    ||||||||||||||||| ||  |||||| |||||| ||| ||||||| |||||||| ||||||||||| ||||||||||    
T  97824 ttcaaatttcaaatttt-ggctccaattttttaggtttacggttatgcaattagggtttgcatgtttgttaggattaga 97747  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 225 - 287
Target Start/End: Original strand, 20910682 - 20910744
Alignment:
Q  225 ttggagccaattatttaggattagggttatggaattaggggttgcatgtttgctaggattaga 287  Q
    ||||||||| || |||||||||||||||| | ||| | || ||||||||||||||||||||||    
T  20910682 ttggagccatttttttaggattagggttaggcaatgaaggtttgcatgtttgctaggattaga 20910744  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 225 - 287
Target Start/End: Original strand, 20925130 - 20925192
Alignment:
Q  225 ttggagccaattatttaggattagggttatggaattaggggttgcatgtttgctaggattaga 287  Q
    ||||||||| || |||||||||||||||| | ||| | || ||||||||||||||||||||||    
T  20925130 ttggagccatttttttaggattagggttaggcaatgaaggtttgcatgtttgctaggattaga 20925192  T

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Target: scaffold0005 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 287
Target Start/End: Complemental strand, 230521 - 230474
Alignment:
Q  240 taggattagggttatggaattaggggttgcatgtttgctaggattaga 287  Q
    |||| ||||||||||| |||||||  ||||||||||||||||||||||    
T  230521 taggtttagggttatgcaattaggatttgcatgtttgctaggattaga 230474  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 287
Target Start/End: Complemental strand, 52126958 - 52126895
Alignment:
Q  224 tttggagccaattatttaggattagggttatggaattaggggttgcatgtttgctaggattaga 287  Q
    |||||||||||  | ||||||||||||||| | ||||||||   ||||||||||||||||||||    
T  52126958 tttggagccaaaaacttaggattagggttaagaaattagggtaagcatgtttgctaggattaga 52126895  T

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