View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16629_low_23 (Length: 407)
Name: NF16629_low_23
Description: NF16629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16629_low_23 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 69 - 386
Target Start/End: Original strand, 21955621 - 21955942
Alignment:
| Q |
69 |
ttataagctgatttggtgtttaggtgaaggaagtggccaatcaatcacgtcatctttgggcagaacacaccgtcagtgtaaagctttttacacactcacc |
168 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
21955621 |
ttataagctgatttggtgtttaggtgaaggaagtggccaatcaatcacgtcatctttgagcagaatacaccgtcagtgtaaagctttttacacactcacc |
21955720 |
T |
|
| Q |
169 |
aacaaaccactaccactatgtacaaagtttcgctgttcatgt----aagtggtagtttactgaaagcgtattagtggaacaacaacaacaatgcgttctc |
264 |
Q |
| |
|
||||||||||| | |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21955721 |
aacaaaccactgcgactatgtaaaaagtttcgctgttcatgtatgtaagtggtagtttactgaaagcgtattagtggaacaacaacaacaatgcgttctc |
21955820 |
T |
|
| Q |
265 |
tcattccctcccaccaccaccgattctccaccgcaatctccgccgcaatcgtcgccaacacaaccaccacaccttccctcccacaatcctacaaaatcca |
364 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
21955821 |
tcattccctcccaccaccaccgattctccaccgcaatctccgccgcaatcgtcgccaacacaaccaccacaccttccctcccacaatcatacaaaatcca |
21955920 |
T |
|
| Q |
365 |
acctccaatcaaaccctggccc |
386 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
21955921 |
acctccaatcaaaccctggccc |
21955942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University