View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16629_low_24 (Length: 404)
Name: NF16629_low_24
Description: NF16629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16629_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Complemental strand, 41697933 - 41697538
Alignment:
| Q |
1 |
gcagcacacaatgaggatgcaaatgttgttcttgttggtcacacgtaagcgtttgtattcatattcatattttgttctcgaattcaaataaaattgcttt |
100 |
Q |
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| T |
41697933 |
gcagcacacaatgaggatgcaaatgttgttcttgttggtcacacgtaagcgtttgtattcatattcatattttgttctcgaattcaaataaaattgcttt |
41697834 |
T |
|
| Q |
101 |
ataagtattctttccttttttggtctttatgttatgcagctacttaattaaaggaagattgccaaatgggctattctttgttgcttatacatatgctggg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41697833 |
ataagtattctttccttttttggtctttatgttatgcagctacttaattaaaggaatattgccaaatgggctattctttgttgcttatacatatgctggg |
41697734 |
T |
|
| Q |
201 |
gagcttccaagctctgcatttgcatttaatagcaatggattggtaaaaattccctattatttcaaatgatctcttaatattaaagtaagtattaagaaca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41697733 |
gagcttccaagctctgcatttgcatttaatagcaatggattggtaaaaattccctattatttcaaatgatctcttaatattaaagtaagtattaagaaca |
41697634 |
T |
|
| Q |
301 |
aaattttctttatgatcattaggcattcactctaaattcagtaccaccagctgaagatgaaattgtagctggtgggattgggcgcaacttcatttc |
396 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41697633 |
aaatttgctttatgatcattaggcattcactctaaattcagtaccaccagctgaagatgaaattgtagctggtgggattgggcgcaacttcatttc |
41697538 |
T |
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