View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16629_low_31 (Length: 347)
Name: NF16629_low_31
Description: NF16629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16629_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 15807268 - 15806943
Alignment:
| Q |
1 |
ttggatgggtagttttgtgtcctagttgtgggttgaagattgatgattataatttctacgaaaatcaaacaggatctccatctcctctgccaaatccagg |
100 |
Q |
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| T |
15807268 |
ttggatgggtagttttgtgtcctagttgtgggttgaagattgatgattataatttctacgaacaacaaacaggatctccatctcctttgccaaatccagg |
15807169 |
T |
|
| Q |
101 |
taatattaattgtttgtttttcaatttggatgcctttcaattttgtaaattgcagactcatcaatcttaggaaagataattaattagttgcttgaggcac |
200 |
Q |
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| T |
15807168 |
taatattaattgtttgttttttaatttggatgcctttcaatgttgtaaattgcagactcatcaatcttaggaaagataattaattagttgcttgaggcac |
15807069 |
T |
|
| Q |
201 |
acttgtaggagatgtctcaagtcgcaattccaacgaattgagatgtttagacatcttcagatcttcactagctcctcttcataagccggcacgtcagagc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
15807068 |
acttgtaggagatgtctcaagtcgcaattccaacgaattgagatgtttagacatcttcagatcttcactagctcctcttcataagccggcacgtcagacc |
15806969 |
T |
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| Q |
301 |
aatgatgtaaatgcggaaatcagtgg |
326 |
Q |
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| T |
15806968 |
aatgatgtaaatgcggaaatcagtgg |
15806943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 15793850 - 15793744
Alignment:
| Q |
1 |
ttggatgggtagttttgtgtcctagttgtgggttgaagattgatgattataatttctacgaaaatcaaacaggatctccatctcctctgccaaatccagg |
100 |
Q |
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|||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||| | | |||||||||||||| |||||| ||||||||||||| |
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| T |
15793850 |
ttggatgggtagttgtgtctcctagttgtgggatgaagattgatgattataatttctacggacaacaaacaggatctccttctcctttgccaaatccagg |
15793751 |
T |
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| Q |
101 |
taatatt |
107 |
Q |
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| T |
15793750 |
taatatt |
15793744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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