View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16629_low_33 (Length: 339)
Name: NF16629_low_33
Description: NF16629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16629_low_33 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 17 - 339
Target Start/End: Original strand, 35373292 - 35373614
Alignment:
| Q |
17 |
ccatttatgctatttaaatttaagatgttttgaaattactactaaaagtgaatggttactttcattttatatctcaatttatcgatattacttgagcgat |
116 |
Q |
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| T |
35373292 |
ccatgtatgctatttaaatttaagatgttttgaaattactactaaaagtgaatggttactttcattttatatctcgatttatcgatattacttgatcgat |
35373391 |
T |
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| Q |
117 |
taatttttgtcaataacttttcgacatttctatataaggcaataactagcaattttagtttgtgttcaattt---tagtctctttgaaattttatattct |
213 |
Q |
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| T |
35373392 |
taatttttgtcaataacttttcgacatttctatataaggc---aactagcaattttagtttgtgttcaaaataaaaaatgtccctgaaattttatattct |
35373488 |
T |
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| Q |
214 |
ttcatttctagtctctttgaaattttgtagtgtcaatttgttgtttgtgaattttgttgtgcacaagttcgtcgagtggagatttttgattgccatgaga |
313 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35373489 |
ttcatttttagtctctttgaaattttgtagtgtcaatttgttgtttgtgaattttgttgtgcacaagttcgtcgagtggagatttttgattgccatgaga |
35373588 |
T |
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| Q |
314 |
gttagcttagtgattccaacaatttc |
339 |
Q |
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|||||||||||||||||||||||||| |
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| T |
35373589 |
gttagcttagtgattccaacaatttc |
35373614 |
T |
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