View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16629_low_34 (Length: 333)
Name: NF16629_low_34
Description: NF16629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16629_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 15 - 230
Target Start/End: Complemental strand, 11148148 - 11147930
Alignment:
| Q |
15 |
aaaaagaagggacaatgagtcgtgaatggctcctagaaaaggctcgtggttgatgtgtgagaacattattaccattgaggtgtgaaaattgaccgaataa |
114 |
Q |
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| T |
11148148 |
aaaaagaagggacaatgagtcgtgaatggctcctagaaaaggcttgtggttgatgtgtgagaacattattaccattgaggtgtgaaaattgaccgaataa |
11148049 |
T |
|
| Q |
115 |
aacaaggtccaaatagtaccactaca---atcgtgctactcggctaagtggaccccataaaagccaaccacacgaatcgatgttgctcattgtcactcaa |
211 |
Q |
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||||||||||||||||||| |||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11148048 |
aacaaggtccaaatagtactactatacatatcgtgctactcgtataagtggaccccataaaagccaaccacacgaatcgatgttgctcattgtcactcaa |
11147949 |
T |
|
| Q |
212 |
tgaaatccattgtatctta |
230 |
Q |
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||||||||||||||||||| |
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| T |
11147948 |
tgaaatccattgtatctta |
11147930 |
T |
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