View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16629_low_36 (Length: 319)
Name: NF16629_low_36
Description: NF16629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16629_low_36 |
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| [»] chr8 (2 HSPs) |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 82 - 319
Target Start/End: Original strand, 40721538 - 40721777
Alignment:
| Q |
82 |
gaaacagtctaaccaaaatatatgatat--gaaaattcaatatgaaatctgtcttctccatatttgattctgctatagccaggtctgatgtgaaaattct |
179 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
40721538 |
gaaacagtctaaccaaaatatatgatatatgaaaattcaatatgaaatctgtcttctccatatttgattctgctatagccaggtcagatgtgaaaattct |
40721637 |
T |
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| Q |
180 |
ttcaagcagcttcaaatggtagaaaaggataacaatttattctaagagttgtctctagtatacaaataacatgccaatgtcacaactagtatatcggatc |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40721638 |
ttcaagcagcttcaaatggtagaaaaggataacaatttattctaagagttgtctctagtatacaaataacatgccaatgtcacaactagtatatcggatc |
40721737 |
T |
|
| Q |
280 |
ccatcaataccagaagccaacaataatgttggaaaccaaa |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
40721738 |
ccatcaataccagaagccaacaataatgttggaaaccaaa |
40721777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 40721454 - 40721500
Alignment:
| Q |
1 |
ggtttacttcctttttaattaaaattaaaaagcatatcttttgtttt |
47 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40721454 |
ggtttacttcctttttaattaaaattaaaaagcatatcttttgtttt |
40721500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 82 - 319
Target Start/End: Original strand, 26794567 - 26794803
Alignment:
| Q |
82 |
gaaacagtctaaccaaaatatatgatatgaaaattcaatatgaaatctgtcttctccatatttgattctgctatagccaggtctgatgtgaaaattcttt |
181 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26794567 |
gaaacaatctaaccaaaatatatgatatgaaaattcaatatgaaatctgtcttctccatatttgattctgctatagccaggtctgatgtgaaaattctta |
26794666 |
T |
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| Q |
182 |
caagcagcttcaaatggtagaaaaggataacaatttattctaagagttgtctctagtatacaaataacatgccaatgtcacaactagtatatcggatccc |
281 |
Q |
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|||||||||||||||||||| |||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
26794667 |
caagcagcttcaaatggtag-aaaggataccagtttatcctaagagttgtctctagtatacaaataacatgccaatgtcacaactagtatattggatccc |
26794765 |
T |
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| Q |
282 |
atcaataccagaagccaacaataatgttggaaaccaaa |
319 |
Q |
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|||||||||||||||||||||||| ||||||||||||| |
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| T |
26794766 |
atcaataccagaagccaacaataacgttggaaaccaaa |
26794803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 83 - 282
Target Start/End: Original strand, 16003330 - 16003529
Alignment:
| Q |
83 |
aaacagtctaaccaaaatatatgatatgaaaattcaatatgaaatctgtcttctccatatttgattctgctatagccaggtctgatgtgaaaattctttc |
182 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |
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| T |
16003330 |
aaacagtctaaccaaaatatatgatatgaaaattcaatatgaaatctgtcttctccataattgattctgctatagccaggtatgatgtgaaaattctttc |
16003429 |
T |
|
| Q |
183 |
aagcagcttcaaatggtagaaaaggataacaatttattctaagagttgtctctagtatacaaataacatgccaatgtcacaactagtatatcggatccca |
282 |
Q |
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||||||||||||||||||||||| |||| || ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |
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| T |
16003430 |
aagcagcttcaaatggtagaaaatgataccagtttatcctaagagttgtctctagtatataaataacatgccaatgtcacaactagtatattggatccca |
16003529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 135 - 251
Target Start/End: Original strand, 19397621 - 19397742
Alignment:
| Q |
135 |
ctccatatttgattctgctatagccagg-----tctgatgtgaaaattctttcaagcagcttcaaatggtagaaaaggataacaatttattctaagagtt |
229 |
Q |
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|||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| | |||| |||||||| ||||||| | |
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| T |
19397621 |
ctccatatttgattctgctatagccacaatgcatctgatatgaaaattctttcaagcagcttcaaatggtagaataagataccaatttatcctaagagat |
19397720 |
T |
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| Q |
230 |
gtctctagtatacaaataacat |
251 |
Q |
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|||||||||||||||||||||| |
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| T |
19397721 |
gtctctagtatacaaataacat |
19397742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 16003243 - 16003289
Alignment:
| Q |
1 |
ggtttacttcctttttaattaaaattaaaaagcatatcttttgtttt |
47 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
16003243 |
ggttcacttcctttttaattaaaattaaaaagcatatcttttgtttt |
16003289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 26794489 - 26794526
Alignment:
| Q |
9 |
tcctttttaattaaaattaaaaagcatatcttttgttt |
46 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
26794489 |
tcctttttaattaaaattaaaaagcatatcttttgttt |
26794526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 250 - 303
Target Start/End: Complemental strand, 8530906 - 8530853
Alignment:
| Q |
250 |
atgccaatgtcacaactagtatatcggatcccatcaataccagaagccaacaat |
303 |
Q |
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||||||||||||||||||||||||| ||| |||||| ||| ||||| ||||||| |
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| T |
8530906 |
atgccaatgtcacaactagtatatcagattccatcagtactagaagacaacaat |
8530853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 135 - 203
Target Start/End: Complemental strand, 8531078 - 8531005
Alignment:
| Q |
135 |
ctccatatttgattctgctatagccagg-----tctgatgtgaaaattctttcaagcagcttcaaatggtagaa |
203 |
Q |
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|||||||||||||||||||| ||||| |||||| |||||||||||| ||||||||||||||||||||| |
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| T |
8531078 |
ctccatatttgattctgctacagccacaatgcatctgatatgaaaattctttaaagcagcttcaaatggtagaa |
8531005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 250 - 303
Target Start/End: Original strand, 5155332 - 5155385
Alignment:
| Q |
250 |
atgccaatgtcacaactagtatatcggatcccatcaataccagaagccaacaat |
303 |
Q |
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||||||||||||||||||||||||| ||| |||||| ||| ||||| ||||||| |
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| T |
5155332 |
atgccaatgtcacaactagtatatcagattccatcagtactagaagacaacaat |
5155385 |
T |
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