View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16629_low_37 (Length: 318)
Name: NF16629_low_37
Description: NF16629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16629_low_37 |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 32208220 - 32207946
Alignment:
| Q |
1 |
ctcactcttttaatcttatgtaccaaaaatacctttttactcgattgaaagttctattactctctagtaatagttagatttatat-atcttgttcataaa |
99 |
Q |
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| T |
32208220 |
ctcactcttttaatcttatgtaccaaaaatacctttttactcgattgaaagttctattactctctagtcatagttagatttatattatcttgttcataaa |
32208121 |
T |
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| Q |
100 |
gnnnnnnnnattaattaaagttacataaatgatcatttttcgacaatcaccgaggggattcgaaatgagtaccttgaggatacacgactaagctcttacc |
199 |
Q |
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| T |
32208120 |
gttttttttattaattaaagttacactgatggtcattttacgacaatcaccgaggggattcgaaatgagtaccttgaggatacaagactaagctcttacc |
32208021 |
T |
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| Q |
200 |
accgagctagcaactaaagtat----cttgcacataaagtttactagtatttggatataaagttgatttataaaa |
270 |
Q |
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|||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32208020 |
accgagctagcaactaaagtattttgcttccacataaagtttactagtatttggatataaagttgatttataaaa |
32207946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 211
Target Start/End: Original strand, 36198893 - 36198977
Alignment:
| Q |
127 |
aatgatcatttttcgacaatcaccgaggggattcgaaatgagtaccttgaggatacacgactaagctcttaccaccgagctagca |
211 |
Q |
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| T |
36198893 |
aatggtcattttacaaccatccccgaggggatttgaactcagtaccttgaggttacaaggctaagctcttaccactaagctagca |
36198977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 211
Target Start/End: Complemental strand, 50892285 - 50892223
Alignment:
| Q |
149 |
ccgaggggattcgaaatgagtaccttgaggatacacgactaagctcttaccaccgagctagca |
211 |
Q |
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| T |
50892285 |
ccgaggggattagaactcagcaccttgaggttacaaggctaagctcttaccactgagctagca |
50892223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 208
Target Start/End: Original strand, 42183973 - 42184014
Alignment:
| Q |
167 |
agtaccttgaggatacacgactaagctcttaccaccgagcta |
208 |
Q |
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|||||||||||| |||| ||||||||||||||||| |||||| |
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| T |
42183973 |
agtaccttgaggctacaagactaagctcttaccactgagcta |
42184014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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