View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16629_low_38 (Length: 297)
Name: NF16629_low_38
Description: NF16629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16629_low_38 |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 16 - 288
Target Start/End: Complemental strand, 27093976 - 27093704
Alignment:
| Q |
16 |
actatcatgtgttttgcttgatagattcaagaagagcttccagtctccaattaaagctttgccacatttgaagatcccaagtttcaagtgaatcttacca |
115 |
Q |
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| T |
27093976 |
actatcatgtgttttgcttgatagattcaagaagagcttctagtctccaattaaagctttgccacatttgaagattccaagtttcaagtgcatcttacca |
27093877 |
T |
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| Q |
116 |
ctcttcataatggtttcctcatcgccctacaacaactaatttgataacttcatgcctaattgacctatctacgttaaacaacttccaaagcattatgtgt |
215 |
Q |
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| T |
27093876 |
ctcttcataatggtttcctcatcgccctacaacaactaatttgataacttcattcctaattgacctatctacgttaaacaacttccaaagcattatgtgt |
27093777 |
T |
|
| Q |
216 |
agacatttaggggaaaaaatctcaggttccaaagcttcacctttgaaacatgaagatttgggtgaagaataat |
288 |
Q |
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| T |
27093776 |
agacatttagggaaaaaaatctcaggttccaaagcttcacctttgaaacatgaagatttgggtgaagcataat |
27093704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 16 - 138
Target Start/End: Complemental strand, 27081092 - 27080958
Alignment:
| Q |
16 |
actatcatgtgttttgcttgatagattcaagaa-------gagcttccagtctccaa-ttaaagctttgccacatttgaagatcccaagtttcaagtgaa |
107 |
Q |
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| T |
27081092 |
actatcatatgctttgcttgatagattcaagaaatcttgagagcttctagcctccaaattaaagctttgccacatttgaaggtcccaagtttcaattgca |
27080993 |
T |
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| Q |
108 |
tct----taccactcttcataatggtttcctcatc |
138 |
Q |
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| T |
27080992 |
tttcatataccactatccataatggtttcctcatc |
27080958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 27090204 - 27090154
Alignment:
| Q |
18 |
tatcatgtgttttgcttgatagattcaagaagagcttccagtctccaatta |
68 |
Q |
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| T |
27090204 |
tatcatatgctttgcttgatagattcaagaagagcttctagtctccaatta |
27090154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 189 - 282
Target Start/End: Complemental strand, 27095341 - 27095251
Alignment:
| Q |
189 |
ttaaacaacttccaaagcattatgtgtagacatttagg-ggaaaaaa--tctcaggttccaaagcttcacctttgaaacatgaagatttgggtgaag |
282 |
Q |
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| T |
27095341 |
ttaaacaacttccaaagcattctgtatagacatttagaaggaaaaaaattctcaggttc------ttcacctttgaagcatgaagatttgggtgaag |
27095251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 209
Target Start/End: Complemental strand, 27083572 - 27083526
Alignment:
| Q |
163 |
cttcatgcctaattgacctatctacgttaaacaacttccaaagcatt |
209 |
Q |
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| T |
27083572 |
cttcatgcctaattgtcccatctaaattaaacaacttccaaagcatt |
27083526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 105
Target Start/End: Complemental strand, 27083620 - 27083584
Alignment:
| Q |
68 |
aaagctttgccacatttgaagatcccaagtttcaagtg |
105 |
Q |
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| T |
27083620 |
aaagctttgccacatttgaagat-ccaagtttcaagtg |
27083584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 163 - 226
Target Start/End: Complemental strand, 41565954 - 41565891
Alignment:
| Q |
163 |
cttcatgcctaattgacctatctacgttaaacaacttccaaagcattatgtgtagacatttagg |
226 |
Q |
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|||||||||||||||||| |||||| ||||||||||||||||||||| | |||||||||||| |
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| T |
41565954 |
cttcatgcctaattgacccatctacattaaacaacttccaaagcattctaactagacatttagg |
41565891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 110
Target Start/End: Complemental strand, 41566004 - 41565962
Alignment:
| Q |
68 |
aaagctttgccacatttgaagatcccaagtttcaagtgaatct |
110 |
Q |
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| T |
41566004 |
aaagctttgccatatttgaagatcccaagtttcaagtgcatct |
41565962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 163 - 209
Target Start/End: Complemental strand, 38857740 - 38857694
Alignment:
| Q |
163 |
cttcatgcctaattgacctatctacgttaaacaacttccaaagcatt |
209 |
Q |
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| T |
38857740 |
cttcatgcctaattgacccatctacattaaacaacttccaaagcatt |
38857694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 105
Target Start/End: Complemental strand, 38857790 - 38857753
Alignment:
| Q |
68 |
aaagctttgccacatttgaagatcccaagtttcaagtg |
105 |
Q |
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| T |
38857790 |
aaagctttgccatatttgaagatcccaagtttcaagtg |
38857753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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