View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16629_low_39 (Length: 290)
Name: NF16629_low_39
Description: NF16629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16629_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 20 - 280
Target Start/End: Original strand, 42003757 - 42004017
Alignment:
| Q |
20 |
tatgggaccaacacatgtatcttctagtaaaacatacacaatgtactatacgttactttcaaagtcggtaacacaacatatgtcttaattatatatgcgg |
119 |
Q |
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| T |
42003757 |
tatgggaccaacacatgtatcttctagtaaaacatacacaatgtactatacgttactttcaaagttggtaacacaacatatgtcttaattatatatgtgg |
42003856 |
T |
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| Q |
120 |
acaagtcatatatgtccacattccaatatttgagtacctggctgaaacatattatgactctacaacttcatcatacaaaaataaagcattgattaaagtt |
219 |
Q |
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| T |
42003857 |
acaagtcatatatgtccacattccaatatttgagtacctggatgaaacatattatgactctacaacttcatcatacaaaaataaagcattgattaaagtt |
42003956 |
T |
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| Q |
220 |
tggttgatcaaatgtatcaaacctacttcacaaaagttgtaacaatttacataaccctttg |
280 |
Q |
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| T |
42003957 |
tggttgatcaaatgtatcaaacctacttcacaaaagttgtaacaatttacataaccctttg |
42004017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 133 - 268
Target Start/End: Original strand, 42012587 - 42012722
Alignment:
| Q |
133 |
gtccacattccaatatttgagtacctggctgaaacatattatgactctacaacttcatcatacaaaaataaagcattgattaaagtttggtt-gatcaaa |
231 |
Q |
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| T |
42012587 |
gtccacatttcaatatttgagtacctagatgaaacatact---actatacaacttcattgtacaaaaagaaaacattgattacagcttggttggttaaaa |
42012683 |
T |
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| Q |
232 |
tgtatcaaac--ctacttcacaaaagttgtaacaattta |
268 |
Q |
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| T |
42012684 |
agtttcaaaccactacttcactaaagttgtaacaattta |
42012722 |
T |
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