View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16629_low_4 (Length: 640)
Name: NF16629_low_4
Description: NF16629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16629_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 623
Target Start/End: Complemental strand, 9348461 - 9347834
Alignment:
| Q |
1 |
ttcaattataaaaattggtgatgctgataattgatacttagattacatgccactcgtgtatagacaacgaattaatccattattttgttctagcaaacga |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
9348461 |
ttcaattataaaaattggtgatgctgttaattgatactcagattacatgccactcgtgtatagacaacgaattaatccattattttgttctagtaaacga |
9348362 |
T |
|
| Q |
101 |
atattgtaatactaaatgaaaaaagttatatataattgatattgttgtctgtcttttgatcatatccctcaagatctggatctcatccttctgaaatcca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
9348361 |
atattgtaatactaaatgaaaaaagttatatataactgatattgttgtctgtcttttgatcatatacctcaagatctggatctcatccttctgaaatcca |
9348262 |
T |
|
| Q |
201 |
ttctttaaaaccatatagcagttcttgctcctcaacaatggaacatgccagacaatagataccaccgaatcaaaa-----acaactttttgttaattata |
295 |
Q |
| |
|
|||||| ||||||| || ||||||| ||||||||| | | |||||||||| |||||||||| | | ||||| ||| | | | || || || |
|
|
| T |
9348261 |
ttcttt-aaaccatttaacagttctagctcctcaaatacgaaacatgccaggtaatagatacctttggaacaaaaatgacacatatatatatttttttta |
9348163 |
T |
|
| Q |
296 |
-ttagaaaccaagtgaataatgaggttttctgtttagcaacattaagaggacaagccagttatacacctcaactccattacattaatcaccatcatggca |
394 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||||||||| | | |||||| |||||||||||||||||||| |||||||||||||| |||||| || |
|
|
| T |
9348162 |
tttagaaaccaagtgactaattaggttttctgtttagcaacactcataggacatgccagttatacacctcaactaaattacattaatcacaatcatgtca |
9348063 |
T |
|
| Q |
395 |
tgtataataatgcacaatgtttggc----acaaatgtgacaagtttgccaaattctaaggaaaactcatgcagctaccacatgctcacatagattaagaa |
490 |
Q |
| |
|
||||| |||||||| |||||| || | ||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||| | |
|
|
| T |
9348062 |
tgtattataatgcaaaatgttctgcatatataaatgtgacaagtttaccaaattctaaggaaaactgatggagctaccacatgctcacatagatt----a |
9347967 |
T |
|
| Q |
491 |
aggtgtgctgaatgtgctcta-gtattatttgttgaataaaatatgaattacttgctattatataaagagagagtgtcaaggacttggtaacaattacta |
589 |
Q |
| |
|
|||| || || ||| ||| || ||| || || || ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9347966 |
aggtttgttgcatgcgctgtacgtagta-ttatttaataaaacatgaattaattgctattatataaagagagagtgtcaaggacttggtaacaattacta |
9347868 |
T |
|
| Q |
590 |
catgcataattataaacattgaacttgagcttcc |
623 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
9347867 |
catgcataattataaacattgaacttgagcttcc |
9347834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 9309421 - 9309085
Alignment:
| Q |
1 |
ttcaattataaaaattggtgatgctgataattgatacttagattacatgccactcgtgtatagacaacgaattaatccattattttgttctagcaaacga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
9309421 |
ttcaattataaaaattggtgatgctgataattgatacttagattacatgccactcgtgtatagacaacgaattaatccattattttgttctagtaaacga |
9309322 |
T |
|
| Q |
101 |
atattgtaatactaaatgaaaaaagttatatataattgatattgttgtctgtcttttgatcatatccctcaagatctggatctcatccttctgaaatcca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9309321 |
atattgtaatactaaatgaaaaaagttatatataactgatattgttgtctgtcttttgatcatatccctcaagatctggatctcatccttctgaaatcca |
9309222 |
T |
|
| Q |
201 |
ttctttaaaaccatatagcagttcttgctcctcaacaatggaacatgccagacaatagataccaccgaatcaaaaacaactttttgttaattatattaga |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
9309221 |
ttctttaaaaccatatagcagttcttgctcctcaacaatggaacatgccagacaatagataccactgaatcaaaaacaactttttg----ttatattaga |
9309126 |
T |
|
| Q |
301 |
aaccaagtgaataatgaggttttctgtttagcaacattaag |
341 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9309125 |
aaccaagtgaataatgaggttttctgtttagcaacattaag |
9309085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 129 - 623
Target Start/End: Complemental strand, 9355814 - 9355315
Alignment:
| Q |
129 |
tatataattgatattgttgtctgtcttttgatcatatccctcaagatctggatctcatccttctgaaatccattctttaaaaccatatagcagttcttgc |
228 |
Q |
| |
|
||||||||||| ||||||||| | ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||| | ||||||| || |
|
|
| T |
9355814 |
tatataattgacattgttgtccatattttgatcatatcccacaagatctggatctcatccttctaaaatccattctttaaa-ccatttcccagttctagc |
9355716 |
T |
|
| Q |
229 |
tcctcaacaatggaacatgccagacaatagataccaccgaatcaaaaacaactttttgttaattatattagaaaccaagtgaataatgaggttttctgtt |
328 |
Q |
| |
|
||||||| ||| ||||||||| |||||||||| | ||| |||||| || ||| || || |||||||||| |||||| ||||||||||||||||| |
|
|
| T |
9355715 |
tcctcaaatatgaaacatgccaagcaatagatacatctgaagcaaaaatgaccctttttt--ttttattagaaacaaagtgattaatgaggttttctgtt |
9355618 |
T |
|
| Q |
329 |
tagcaacattaagaggacaagccagt--tatacacctcaactccattacattaatcaccatcatgg------catgtataataatgcacaatgtttggca |
420 |
Q |
| |
|
||| |||| | ||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
9355617 |
tagtaacacttggaggacatgccagtgttatacacctcaactccattacattaatcaccatcatgcatatgacatgtataataatgcacaatgtttggca |
9355518 |
T |
|
| Q |
421 |
caaatgtgacaagtttgccaaattctaaggaaaactcatgcagctaccacatgctcacatagattaagaaaggtgtgctgaatgtgctctagtattattt |
520 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||| ||||||| |||||||| || |
|
|
| T |
9355517 |
caaatgtgacaagtttaccaaattctaaggaaaactcatggagccaccacatgctcacatagattaagaaaggtttgctgcatgtgctatagtattagtt |
9355418 |
T |
|
| Q |
521 |
gttgaataaaatatgaattacttgctattatataaagagagagtgtcaaggacttggtaacaattactacatgcataattataaacattgaacttgagct |
620 |
Q |
| |
|
|||||||||| |||||| |||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
9355417 |
tttgaataaaacatgaatcacttgctattatataaggagagggtgtcaaggacttggtaacaattagtacatgcataattataaacattgagcttgagct |
9355318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 350 - 623
Target Start/End: Complemental strand, 9308316 - 9308043
Alignment:
| Q |
350 |
ccagttatacacctcaactccattacattaatcaccatcatggcatgtataataatgcacaatgtttggcacaaatgtgacaagtttgccaaattctaag |
449 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
9308316 |
ccagttatacacctcaactccattacattaatcaccatcatggcatgtataataatgcacaatgtttggcacaaatgtgacaagtttaccaaattctaag |
9308217 |
T |
|
| Q |
450 |
gaaaactcatgcagctaccacatgctcacatagattaagaaaggtgtgctgaatgtgctctagtattatttgttgaataaaatatgaattacttgctatt |
549 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
9308216 |
gaaaactcatgcagctaccacatgctcacatagattaagaaaggtgtgctgcatgtgctctagtattatttgttgaataaaatatgagttacttgctatt |
9308117 |
T |
|
| Q |
550 |
atataaagagagagtgtcaaggacttggtaacaattactacatgcataattataaacattgaacttgagcttcc |
623 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
9308116 |
atataaagagagagtgtcaaggacttggtaacaattactacatttataattataaacattgaacttgagcttcc |
9308043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 121 - 280
Target Start/End: Complemental strand, 9372892 - 9372730
Alignment:
| Q |
121 |
aaaagttatatataattgatattgttgtctgtcttttgatc----atatccctcaagatctggatctcatccttctgaaatccattctttaaaaccatat |
216 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
9372892 |
aaaaattatatataattgatattgttgtctgt-gtttgatcatatatatcccacaagatctggatctcatccttctgaaatccattctttaaaaccatgt |
9372794 |
T |
|
| Q |
217 |
agcagttcttgctcctcaacaatggaacatgccagacaatagataccaccgaatcaaaaacaac |
280 |
Q |
| |
|
||||||| | ||||| ||||||||||||||||||| ||||||||||| | | ||| |||||||| |
|
|
| T |
9372793 |
agcagttgtagctccgcaacaatggaacatgccagccaatagatacctctggatcgaaaacaac |
9372730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 132 - 494
Target Start/End: Original strand, 9293655 - 9294004
Alignment:
| Q |
132 |
ataattgatattgttgtctgtcttttgatcatatccctcaagatctggatctcatccttctgaaatccattctttaaaaccatatagcagttcttgctcc |
231 |
Q |
| |
|
|||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||||| || || |
|
|
| T |
9293655 |
ataatttatattgttgtctgtcttttgatcaaatcccacaagatctggatctcatccttctaaaatccattctttac----------cagttctagcacc |
9293744 |
T |
|
| Q |
232 |
tcaacaatggaacatgccagacaatagataccaccgaatcaaaaacaactttttgttaattatattagaaaccaagtgaataatgaggttttctgtttag |
331 |
Q |
| |
|
|||||| |||||||||||| |||| |||||| | ||| |||||||| | | ||| ||||||||| ||| |||||| |||||| | ||| |||||| |
|
|
| T |
9293745 |
tcaacag-ggaacatgccagccaattgatacctctgaaccaaaaacagcaccgtttta-ttatattagtaacaaagtga-taatgaaggtttttgtttac |
9293841 |
T |
|
| Q |
332 |
caacattaagaggaca----agccagttatacacctcaactccattacattaatcaccatcatggcatgtataataatgcacaatgtttggcacaaatgt |
427 |
Q |
| |
|
||||| | ||||||| || | ||||||||||||| | |||| ||||| |||| |||| |||||||||||||||||||||||||||||| | |
|
|
| T |
9293842 |
caacactttgaggacatttaagttaattatacacctcaaatacatttcatta----ccattatggacagtataataatgcacaatgtttggcacaaattt |
9293937 |
T |
|
| Q |
428 |
gacaagtttgccaaattctaaggaaaactcatgcagctaccacatgctcacatagattaagaaaggt |
494 |
Q |
| |
|
||||||||| ||||||| ||||||||||| || ||||||||||||||||||| |||||||| |||| |
|
|
| T |
9293938 |
gacaagtttaccaaattttaaggaaaacttttgtagctaccacatgctcacatggattaagagaggt |
9294004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 132 - 256
Target Start/End: Original strand, 9298289 - 9298412
Alignment:
| Q |
132 |
ataattgatattgttgtctgtcttttgatcatatccctcaagatctggatctcatccttctgaaatccattctttaaaaccatatagcagttcttgctcc |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||| | |||||||| | ||| |
|
|
| T |
9298289 |
ataattgatattgttgtctgtcttttgatcatatccctcaagatctggatctcatccttcaaaaattcattcttt-aaaccattttgcagttctagttcc |
9298387 |
T |
|
| Q |
232 |
tcaacaatggaacatgccagacaat |
256 |
Q |
| |
|
|||||||||||||||||||| |||| |
|
|
| T |
9298388 |
tcaacaatggaacatgccagccaat |
9298412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 130 - 457
Target Start/End: Complemental strand, 9366969 - 9366635
Alignment:
| Q |
130 |
atataattgatattgttgtctgtcttttgatcat----atccctcaagatctggatctcatccttctgaaatccattctttaaaaccatatagcagttct |
225 |
Q |
| |
|
||||||||||||||| ||||||| ||||| |||| |||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||| | |
|
|
| T |
9366969 |
atataattgatattgctgtctgt-ttttggtcatgtatatccaacaagatctggatctcatccttctgaaatccattcttt-aaatcatatagcagttgt |
9366872 |
T |
|
| Q |
226 |
tgctcctcaacaatggaacatgccagacaatagataccaccgaatcaaaaacaactttttgtt---------aattatattagaaaccaagtgaataatg |
316 |
Q |
| |
|
||| ||||| ||||||||||||||| |||||||||| | |||| |||||||| |||||| | |||||| |||| |||||| || | |
|
|
| T |
9366871 |
agcttctcaagaatggaacatgccagcaaatagatacctctgaattgaaaacaacactttgttttcttcttcatatatattggaaa-aaagtgacta--g |
9366775 |
T |
|
| Q |
317 |
aggttttctgtttagcaacattaagaggaca-agccagt--tatacacctcaactccattacattaatcaccatcatggcatgtataataatgcacaatg |
413 |
Q |
| |
|
|||||||||||||| ||||| | ||||||| || ||| |||||||||||| |||||| |||| ||||| |||||||||||||||||||| |||| |
|
|
| T |
9366774 |
aggttttctgtttaccaacactcggaggacatggcaagtcatatacacctcaaatccatttcatt----accattatggcatgtataataatgcataatg |
9366679 |
T |
|
| Q |
414 |
tttggcacaaatgtgacaagtttgccaaattctaaggaaaactc |
457 |
Q |
| |
|
||||||| ||| ||||||||||| |||| ||||| || |||||| |
|
|
| T |
9366678 |
tttggcataaacgtgacaagtttaccaagttctatgggaaactc |
9366635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 132 - 459
Target Start/End: Original strand, 9289145 - 9289463
Alignment:
| Q |
132 |
ataattgatattgttgtctgtcttttgatcatat----ccctcaagatctggatctcatccttctgaaatccattctttaaaaccatatagcagttcttg |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||| | ||||| | |
|
|
| T |
9289145 |
ataattgatattgttgtctgtcttttgatcatatatatcccacaagatctggatctcatccttcaaaaatccattctttac----------ctgttctcg |
9289234 |
T |
|
| Q |
228 |
ctcctcaacaatggaacatgccagacaatagataccaccgaatcaaaaacaactttttgttaattatattagaaaccaagtgaataatgaggttttctgt |
327 |
Q |
| |
|
| ||| ||| |||||||||||| ||||||||||| | ||| |||||||| | || ||| ||||||||||||| |||||| |||||| | ||| ||| |
|
|
| T |
9289235 |
catctcgacag-ggaacatgccaggcaatagatacctctgaaccaaaaacagcaccttttta-ttatattagaaacaaagtga-taatgaaggtttttgt |
9289331 |
T |
|
| Q |
328 |
ttagcaacattaagaggacaagccagtta----tacacctcaactccattacattaatcaccatcatggcatgtataataatgcacaatgtttggcacaa |
423 |
Q |
| |
|
||| ||||| | |||||||| |||||||| |||||||||| | ||| |||||| |||| |||| |||||||||||||||||||| |||| ||| |
|
|
| T |
9289332 |
ttaccaacactcagaggacatgccagttaactatacacctcaaatacatcacatta----ccattatggactgtataataatgcacaatgtatggctcaa |
9289427 |
T |
|
| Q |
424 |
atgtgacaagtttgccaaattctaaggaaaactcat |
459 |
Q |
| |
|
|| ||||||||| ||||||| |||||||||||||| |
|
|
| T |
9289428 |
ttgggacaagtttaccaaattttaaggaaaactcat |
9289463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 394 - 494
Target Start/End: Original strand, 9298538 - 9298638
Alignment:
| Q |
394 |
atgtataataatgcacaatgtttggcacaaatgtgacaagtttgccaaattctaaggaaaactcatgcagctaccacatgctcacatagattaagaaagg |
493 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |||||||||| || |||| ||||||||| ||||| ||||||||||||||||||| |||||||| ||| |
|
|
| T |
9298538 |
atgtataataatacacaatgtttggcacaaacatgacaagtttaccgaattttaaggaaaattcatgtagctaccacatgctcacattgattaagagagg |
9298637 |
T |
|
| Q |
494 |
t |
494 |
Q |
| |
|
| |
|
|
| T |
9298638 |
t |
9298638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 402 - 458
Target Start/End: Complemental strand, 9372699 - 9372643
Alignment:
| Q |
402 |
taatgcacaatgtttggcacaaatgtgacaagtttgccaaattctaaggaaaactca |
458 |
Q |
| |
|
||||| ||||||||||||| ||| |||||| ||| |||| |||||||||||||||| |
|
|
| T |
9372699 |
taatgtacaatgtttggcataaaaatgacaaatttaccaagttctaaggaaaactca |
9372643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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