View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16629_low_49 (Length: 266)
Name: NF16629_low_49
Description: NF16629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16629_low_49 |
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Alignment Details
Target: chr6 (Bit Score: 126; Significance: 5e-65; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 117 - 250
Target Start/End: Complemental strand, 24351966 - 24351833
Alignment:
| Q |
117 |
aataatatactgattcatgtagttcaactagagactcgttagttcgaccagtgaccgacaaatcaagtaaataagtcaacgactagtcctgagtttaata |
216 |
Q |
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| T |
24351966 |
aataatatactaattcatgtagttcaactagagactcgttagttcgaccagtgaccgacaaatcaagtaactaagtcaacgactagtcctgagtttaata |
24351867 |
T |
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| Q |
217 |
acattgctaatcagtaatagcgagtgctgaaaaa |
250 |
Q |
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| T |
24351866 |
acattgctaatcagtaatagcgagtgctgaaaaa |
24351833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 121 - 250
Target Start/End: Original strand, 9857933 - 9858062
Alignment:
| Q |
121 |
atatactgattcatgtagttcaactagagactcgttagttcgaccagtgaccgacaaatcaagtaaataagtcaacgactagtcctgagtttaataacat |
220 |
Q |
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||||||||||||| ||||||||||||||||||| | ||||| || ||||||| ||||| ||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
9857933 |
atatactgattcacgtagttcaactagagactcatcagttcaactagtgaccaacaaaacaagtaactaagtcaacgactggtcctgagtttaataacat |
9858032 |
T |
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| Q |
221 |
tgctaatcagtaatagcgagtgctgaaaaa |
250 |
Q |
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| T |
9858033 |
tgctaattagtaatagtgagtgctaaaaaa |
9858062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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