View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16629_low_53 (Length: 253)

Name: NF16629_low_53
Description: NF16629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16629_low_53
NF16629_low_53
[»] chr6 (3 HSPs)
chr6 (17-133)||(24325393-24325510)
chr6 (17-83)||(15381000-15381064)
chr6 (18-88)||(655610-655680)
[»] chr8 (4 HSPs)
chr8 (20-161)||(45393856-45393996)
chr8 (21-132)||(45402319-45402430)
chr8 (26-111)||(37766192-37766271)
chr8 (21-82)||(29636857-29636918)
[»] chr1 (9 HSPs)
chr1 (17-84)||(46209439-46209507)
chr1 (17-84)||(46208091-46208158)
chr1 (21-76)||(50269393-50269448)
chr1 (30-135)||(9308218-9308322)
chr1 (25-131)||(9309509-9309615)
chr1 (55-90)||(48962361-48962396)
chr1 (18-72)||(33851021-33851075)
chr1 (18-72)||(33942903-33942957)
chr1 (49-130)||(48962912-48962993)
[»] chr2 (5 HSPs)
chr2 (20-72)||(45230128-45230180)
chr2 (17-82)||(20188393-20188458)
chr2 (18-88)||(45231469-45231539)
chr2 (18-88)||(39674896-39674966)
chr2 (17-62)||(20193153-20193198)
[»] chr4 (3 HSPs)
chr4 (26-72)||(47487925-47487971)
chr4 (18-84)||(51987140-51987206)
chr4 (18-72)||(47489273-47489327)
[»] chr5 (3 HSPs)
chr5 (21-70)||(21550117-21550166)
chr5 (18-77)||(37253484-37253543)
chr5 (27-91)||(21550261-21550325)
[»] chr3 (2 HSPs)
chr3 (18-71)||(53195638-53195691)
chr3 (17-73)||(46693048-46693104)


Alignment Details
Target: chr6 (Bit Score: 82; Significance: 8e-39; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 17 - 133
Target Start/End: Original strand, 24325393 - 24325510
Alignment:
Q  17 caacttcacccccttttgcaactcagtggccccctcttattttgaccgggtcaaagcccacgtggccactcacttgagtgaggtggacgccacgtaggca 116  Q
    ||||||||||| ||||||||||||| ||| |||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||    
T  24325393 caacttcacccgcttttgcaactcaatggtcccctcctattttgaccgggtcaaagcccatgtggccactcacttaagtgaggtggatgccacgtaggca 24325492  T
Q  117 a-ttttttaattaaaaat 133  Q
    | ||||||||||||||||    
T  24325493 atttttttaattaaaaat 24325510  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 15381064 - 15381000
Alignment:
Q  17 caacttcacccccttttgcaactcagtggccccctcttattttgaccgggtcaaagcccacgtggcc 83  Q
    |||||||||||||||||||  ||||||||||||||| |||||||||| |||||||||||| ||||||    
T  15381064 caacttcacccccttttgc--ctcagtggccccctcctattttgacccggtcaaagcccatgtggcc 15381000  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 655610 - 655680
Alignment:
Q  18 aacttcacccccttttgcaactcagtggccccctcttattttgaccgggtcaaagcccacgtggccactca 88  Q
    ||||||||||||||||||||||||  | |||||||| |||||||| |||||||| |||| |||||||||||    
T  655610 aacttcacccccttttgcaactcatagaccccctctgattttgacagggtcaaaacccaagtggccactca 655680  T

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Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 20 - 161
Target Start/End: Complemental strand, 45393996 - 45393856
Alignment:
Q  20 cttcacccccttttgcaactcagtggccccctcttattttgaccgggtcaaagcccacgtggccactcacttgagtgaggtggacgccacgtaggcaatt 119  Q
    ||||||||||||||||| |||| || |||| || |||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||      
T  45393996 cttcacccccttttgcatctcattgacccc-tcctattttgaccgggtcaaagcccacgtgggcactcacttaagtgaggtggacgccatgtaggcaa-a 45393899  T
Q  120 ttttaattaaaaat-aaggataaagccatgtggatattttatg 161  Q
    |||||||||||||| ||||||||| ||||| || |||||||||    
T  45393898 ttttaattaaaaataaaggataaaaccatgcgggtattttatg 45393856  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 132
Target Start/End: Complemental strand, 45402430 - 45402319
Alignment:
Q  21 ttcacccccttttgcaactcagtggccc-cctcttattttgaccgggtcaaagcccacgtggccactcacttgagtgaggtggacgccacgtaggcaatt 119  Q
    ||||||||||||| ||||| |||| ||| ||||| |||||||||||||||| ||||| |||||||| || || ||||| ||| ||||||| | | |||||    
T  45402430 ttcacccccttttacaactgagtgaccctcctct-attttgaccgggtcaacgcccatgtggccacccatttaagtgaagtgaacgccacattgacaatt 45402332  T
Q  120 ttttaattaaaaa 132  Q
    |||||||||||||    
T  45402331 ttttaattaaaaa 45402319  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 26 - 111
Target Start/End: Complemental strand, 37766271 - 37766192
Alignment:
Q  26 ccccttttgcaactcagtggccccctcttattttgaccgggtcaaagcccacgtggccactcacttgagtgaggtggacgccacgt 111  Q
    |||||||||||||| || |||||||||| ||||||      |||||||||| |||||||||||||||| |||| ||||||||||||    
T  37766271 ccccttttgcaactaagaggccccctctaattttg------tcaaagcccatgtggccactcacttgactgagttggacgccacgt 37766192  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 29636918 - 29636857
Alignment:
Q  21 ttcacccccttttgcaactcagtggccccctcttattttgaccgggtcaaagcccacgtggc 82  Q
    |||||||||||||||||||||   ||||||||| ||||||||  |||||||| |||| ||||    
T  29636918 ttcacccccttttgcaactcacatgccccctctaattttgactcggtcaaaggccacatggc 29636857  T

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Target: chr1 (Bit Score: 57; Significance: 7e-24; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 46209507 - 46209439
Alignment:
Q  17 caacttcaccccc-ttttgcaactcagtggccccctcttattttgaccgggtcaaagcccacgtggcca 84  Q
    ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  46209507 caacttcaccccccttttgcaactcagtggccccctcctattttgaccgggtcaaagcccacgtggcca 46209439  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 46208091 - 46208158
Alignment:
Q  17 caacttcacccccttttgcaactcagtggccccctcttattttgaccgggtcaaagcccacgtggcca 84  Q
    |||||||||||| ||||||||||||||| ||||||| |||||||||  ||||||||||||||||||||    
T  46208091 caacttcacccctttttgcaactcagtgaccccctcctattttgactaggtcaaagcccacgtggcca 46208158  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 50269393 - 50269448
Alignment:
Q  21 ttcacccccttttgcaactcagtggccccctcttattttgaccgggtcaaagccca 76  Q
    |||||||||||||||||||||||| |||||||| |||||||| |||||||||||||    
T  50269393 ttcacccccttttgcaactcagtgaccccctctgattttgactgggtcaaagccca 50269448  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 135
Target Start/End: Original strand, 9308218 - 9308322
Alignment:
Q  30 ttttgcaactcagtggccccctcttattttgaccgggtcaaagcccacgtggccactcacttgagtgaggtggacgccacgtaggcaattttttaattaa 129  Q
    ||||||||||||  |||||| | | |||||||| |||||||||||||||||||||||||||| |||||  |||| ||||| | || ||||||  ||||||    
T  9308218 ttttgcaactcataggcccctt-tgattttgactgggtcaaagcccacgtggccactcacttaagtgacatggatgccacatgggtaattttcgaattaa 9308316  T
Q  130 aaataa 135  Q
    ||||||    
T  9308317 aaataa 9308322  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 25 - 131
Target Start/End: Complemental strand, 9309615 - 9309509
Alignment:
Q  25 cccccttttgcaactcagtggccccctcttattttgaccgggtcaaagcccacgtggccactcacttgagtgaggtggacgccacgtaggcaatttttta 124  Q
    ||||||||||||||||   |||||||| | |||||||   |||||| ||| |||||||  ||||||| ||||||||||| |||||||| | ||||||| |    
T  9309615 cccccttttgcaactcgtaggccccctttgattttgatttggtcaacgcctacgtggctcctcacttaagtgaggtggatgccacgtatgtaatttttaa 9309516  T
Q  125 attaaaa 131  Q
     ||||||    
T  9309515 tttaaaa 9309509  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 90
Target Start/End: Original strand, 48962361 - 48962396
Alignment:
Q  55 attttgaccgggtcaaagcccacgtggccactcact 90  Q
    |||||||||||||||||||||| |||||||||||||    
T  48962361 attttgaccgggtcaaagcccaagtggccactcact 48962396  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 33851021 - 33851075
Alignment:
Q  18 aacttcacccccttttgcaactcagtggccccctcttattttgaccgggtcaaag 72  Q
    |||||| |||||||||||||||||  |||||||||| |||||||||  |||||||    
T  33851021 aacttcgcccccttttgcaactcataggccccctctaattttgaccaagtcaaag 33851075  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 33942957 - 33942903
Alignment:
Q  18 aacttcacccccttttgcaactcagtggccccctcttattttgaccgggtcaaag 72  Q
    |||||| |||||||||||||||||  |||||||||| |||||||||  |||||||    
T  33942957 aacttcgcccccttttgcaactcataggccccctctaattttgaccaagtcaaag 33942903  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 49 - 130
Target Start/End: Complemental strand, 48962993 - 48962912
Alignment:
Q  49 cctcttattttgaccgggtcaaagcccacgtggccactcacttgagtgaggtggacgccacgtaggcaattttttaattaaa 130  Q
    ||||| ||||||||||||||||| |||| |||| ||||| ||| | |||| ||||| ||| |||||  ||||||||| ||||    
T  48962993 cctctgattttgaccgggtcaaaacccatgtggtcactcgcttaactgagatggacaccatgtaggttattttttaaataaa 48962912  T

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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 45230128 - 45230180
Alignment:
Q  20 cttcacccccttttgcaactcagtggccccctcttattttgaccgggtcaaag 72  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  45230128 cttcacccccttttgcaactcagaggccccctctgattttgaccgggtcaaag 45230180  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 20188393 - 20188458
Alignment:
Q  17 caacttcacccccttttgcaactcagtggccccctcttattttgaccgggtcaaagcccacgtggc 82  Q
    |||||||||||||||||||||||||||||||||||  |||||||||  |||||| ||||| |||||    
T  20188393 caacttcacccccttttgcaactcagtggcccccttctattttgactaggtcaatgcccatgtggc 20188458  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 45231539 - 45231469
Alignment:
Q  18 aacttcacccccttttgcaactcagtggccccctcttattttgaccgggtcaaagcccacgtggccactca 88  Q
    ||||||||||||||||||||| ||  |||||||||| ||||||||||||||||||   | |||||||||||    
T  45231539 aacttcacccccttttgcaacccataggccccctctgattttgaccgggtcaaagtttaagtggccactca 45231469  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 39674966 - 39674896
Alignment:
Q  18 aacttcacccccttttgcaactcagtggccccctcttattttgaccgggtcaaagcccacgtggccactca 88  Q
    |||||| ||||||||||||| ||   |||||| ||| ||||||||||||||||||  || |||||||||||    
T  39674966 aacttctcccccttttgcaaatcttaggccccttctgattttgaccgggtcaaagttcaagtggccactca 39674896  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 20193198 - 20193153
Alignment:
Q  17 caacttcacccccttttgcaactcagtggccccctcttattttgac 62  Q
    |||||||||||||||||||||||||| | ||||||  |||||||||    
T  20193198 caacttcacccccttttgcaactcagcgccccccttctattttgac 20193153  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 47487925 - 47487971
Alignment:
Q  26 ccccttttgcaactcagtggccccctcttattttgaccgggtcaaag 72  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||    
T  47487925 ccccttttgcaactcagaggccccctcttattttgaccgggtcaaag 47487971  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 51987206 - 51987140
Alignment:
Q  18 aacttcacccccttttgcaactcagtggccccctcttattttgaccgggtcaaagcccacgtggcca 84  Q
    |||||||| |||||||||||||||  | |||||||| |||||||| || |||||||||| |||||||    
T  51987206 aacttcacacccttttgcaactcatagaccccctctgattttgactggatcaaagcccaggtggcca 51987140  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 47489327 - 47489273
Alignment:
Q  18 aacttcacccccttttgcaactcagtggccccctcttattttgaccgggtcaaag 72  Q
    ||||||||||||||||||||| ||   ||||||||| ||||||||| ||||||||    
T  47489327 aacttcacccccttttgcaacccataagccccctctgattttgaccaggtcaaag 47489273  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 21550117 - 21550166
Alignment:
Q  21 ttcacccccttttgcaactcagtggccccctcttattttgaccgggtcaa 70  Q
    ||||||||||||||||||||||||||||| |  |||||||| ||||||||    
T  21550117 ttcacccccttttgcaactcagtggcccctttctattttgaacgggtcaa 21550166  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 37253484 - 37253543
Alignment:
Q  18 aacttcacccccttttgcaactcagtggccccctcttattttgaccgggtcaaagcccac 77  Q
    |||||||||||||||||||| | |  |||||||||| ||||||||| |||||||| ||||    
T  37253484 aacttcacccccttttgcaatttataggccccctctaattttgacccggtcaaaggccac 37253543  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 91
Target Start/End: Complemental strand, 21550325 - 21550261
Alignment:
Q  27 cccttttgcaactcagtggccccctcttattttgaccgggtcaaagcccacgtggccactcactt 91  Q
    ||||||||||||||| || ||||||  ||||||||| ||||||| |||||  |||||||| ||||    
T  21550325 cccttttgcaactcactgacccccttctattttgactgggtcaatgcccatttggccacttactt 21550261  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 53195638 - 53195691
Alignment:
Q  18 aacttcacccccttttgcaactcagtggccccctcttattttgaccgggtcaaa 71  Q
    |||||||||||||||||||||| |  || ||||||| ||||||||| |||||||    
T  53195638 aacttcacccccttttgcaacttataggtcccctctgattttgacccggtcaaa 53195691  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 46693048 - 46693104
Alignment:
Q  17 caacttcacccccttttgcaactcagtggccccctcttattttgaccgggtcaaagc 73  Q
    ||||||||||||  |||||||||||||  ||||||| |||||| ||| |||||||||    
T  46693048 caacttcacccctgtttgcaactcagtaaccccctcctattttaacccggtcaaagc 46693104  T

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