View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16629_low_58 (Length: 248)
Name: NF16629_low_58
Description: NF16629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16629_low_58 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 44901172 - 44901419
Alignment:
| Q |
1 |
taggagagtaattgagatccacagtcacttgactagtgtatatgaagacggtgatgctcaatctactcttattgctatgcttcaatcactaaaccatgct |
100 |
Q |
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| T |
44901172 |
taggagagtaattgagatccacagtcacttgactagtgtatatgaagacggtgatgctcaatctgctcttattgctatgcttcaatcactaaaccatgct |
44901271 |
T |
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| Q |
101 |
aaaactggtgtggatatcttgactggaacacccgtcaagtctcactttgctagaccaaaatggcgcagcgtctacaagcgcattgcacttaatcatccac |
200 |
Q |
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| T |
44901272 |
aaaaatggtgtggatatcttgactggaacacccgtcaagtctcactttgctagaccaaaatggtgcagcgtctacaagcgcattgcacttaatcatccac |
44901371 |
T |
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| Q |
201 |
aaaaacgcattggtgagttcctatataattcttcgtgtttctttggtt |
248 |
Q |
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| T |
44901372 |
aaaaacgcattggtgagttcctatataattcttcgtgtttctttggtt |
44901419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 32 - 220
Target Start/End: Original strand, 44917953 - 44918141
Alignment:
| Q |
32 |
actagtgtatatgaagacggtgatgctcaatctactcttattgctatgcttcaatcactaaaccatgctaaaactggtgtggatatcttgactggaacac |
131 |
Q |
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| T |
44917953 |
actagtgtttatgaagagggtgatgctcgctctgctcttattgctatgctccaatcacttaatcatgctaaaaatggtgtggatatcgtctctggaacac |
44918052 |
T |
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| Q |
132 |
ccgtcaagtctcactttgctagaccaaaatggcgcagcgtctacaagcgcattgcacttaatcatccacaaaaacgcattggtgagttc |
220 |
Q |
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| T |
44918053 |
gcgtcaagtctcactttgctaaacctaattggcgtagtgtctacaagcgcattgcacttaatcatccacaaacacgcgttggtgagttc |
44918141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 7 - 224
Target Start/End: Original strand, 44892525 - 44892742
Alignment:
| Q |
7 |
agtaattgagatccacagtcacttgactagtgtatatgaagacggtgatgctcaatctactcttattgctatgcttcaatcactaaaccatgctaaaact |
106 |
Q |
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| T |
44892525 |
agtaattgagatacacagtcacttgactagtgtatatgaagacggtgatgctcgctctgctcttgttactgtccttcaatcactaaaccatgctaaagaa |
44892624 |
T |
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| Q |
107 |
ggtgtggatatcttgactggaacacccgtcaagtctcactttgctagaccaaaatggcgcagcgtctacaagcgcattgcacttaatcatccacaaaaac |
206 |
Q |
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| T |
44892625 |
ggtttggatatcttaaatggaacacccatcgcgtcttactttgcacgacccaattggcgcagtgtctacaataggattgcaaataatcatccacaaaaac |
44892724 |
T |
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| Q |
207 |
gcattggtgagttcctat |
224 |
Q |
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| T |
44892725 |
gcattggtgagttcctat |
44892742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 198
Target Start/End: Original strand, 39985716 - 39985780
Alignment:
| Q |
134 |
gtcaagtctcactttgctagaccaaaatggcgcagcgtctacaagcgcattgcacttaatcatcc |
198 |
Q |
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| T |
39985716 |
gtcatgtctcattttgctaaacccaattggcgcactgtctacaaacgcattgcacttaatcatcc |
39985780 |
T |
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