View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16629_low_60 (Length: 247)

Name: NF16629_low_60
Description: NF16629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16629_low_60
NF16629_low_60
[»] chr7 (22 HSPs)
chr7 (1-184)||(22251245-22251426)
chr7 (1-158)||(22204337-22204497)
chr7 (1-158)||(22230242-22230402)
chr7 (159-193)||(40428575-40428609)
chr7 (148-193)||(26935573-26935618)
chr7 (144-193)||(44151496-44151545)
chr7 (144-196)||(24363614-24363666)
chr7 (144-196)||(34754823-34754874)
chr7 (144-191)||(3610758-3610805)
chr7 (144-191)||(20881654-20881701)
chr7 (146-196)||(4966163-4966213)
chr7 (146-196)||(27378841-27378891)
chr7 (149-190)||(2012634-2012675)
chr7 (1-78)||(22551529-22551606)
chr7 (148-189)||(25793255-25793296)
chr7 (144-196)||(2825244-2825296)
chr7 (161-193)||(12234905-12234937)
chr7 (144-196)||(20553108-20553160)
chr7 (164-220)||(22204493-22204549)
chr7 (59-119)||(27481419-27481479)
chr7 (144-196)||(44910609-44910661)
chr7 (148-196)||(45859539-45859587)
[»] chr4 (15 HSPs)
chr4 (144-196)||(49219144-49219196)
chr4 (146-197)||(15969911-15969962)
chr4 (144-194)||(24929498-24929548)
chr4 (145-199)||(45128320-45128374)
chr4 (144-196)||(29263375-29263427)
chr4 (149-196)||(1137722-1137769)
chr4 (146-196)||(7694023-7694073)
chr4 (146-196)||(18628556-18628606)
chr4 (167-196)||(2592322-2592351)
chr4 (167-196)||(5131263-5131292)
chr4 (144-193)||(11158373-11158422)
chr4 (144-193)||(11264306-11264355)
chr4 (144-196)||(8468953-8469005)
chr4 (144-192)||(24370970-24371018)
chr4 (141-193)||(35405949-35406001)
[»] chr8 (14 HSPs)
chr8 (159-196)||(6950342-6950379)
chr8 (146-196)||(30277258-30277308)
chr8 (146-191)||(8535788-8535833)
chr8 (159-196)||(41606916-41606953)
chr8 (144-203)||(4762514-4762573)
chr8 (146-193)||(31862500-31862547)
chr8 (146-192)||(2235673-2235719)
chr8 (146-196)||(8060676-8060726)
chr8 (166-199)||(7039837-7039870)
chr8 (144-193)||(13459650-13459699)
chr8 (148-193)||(14949875-14949920)
chr8 (167-196)||(30918141-30918170)
chr8 (145-193)||(2458582-2458630)
chr8 (160-196)||(11000589-11000625)
[»] chr6 (12 HSPs)
chr6 (144-196)||(7931802-7931854)
chr6 (166-202)||(20512651-20512687)
chr6 (146-196)||(6536956-6537004)
chr6 (145-196)||(7931739-7931790)
chr6 (145-196)||(25103292-25103343)
chr6 (150-196)||(281861-281907)
chr6 (150-196)||(30523948-30523994)
chr6 (146-196)||(31671087-31671137)
chr6 (144-193)||(2117408-2117457)
chr6 (167-196)||(7785757-7785786)
chr6 (167-196)||(27909651-27909680)
chr6 (159-196)||(34939533-34939570)
[»] chr5 (19 HSPs)
chr5 (144-196)||(5951981-5952033)
chr5 (146-193)||(17258899-17258946)
chr5 (146-199)||(1084131-1084184)
chr5 (146-191)||(36638754-36638799)
chr5 (146-193)||(11615508-11615555)
chr5 (144-199)||(18543207-18543261)
chr5 (148-199)||(32059369-32059420)
chr5 (149-196)||(38104870-38104917)
chr5 (146-196)||(3237100-3237150)
chr5 (144-193)||(4855703-4855752)
chr5 (148-193)||(8985670-8985715)
chr5 (144-193)||(37588376-37588425)
chr5 (144-193)||(40205090-40205139)
chr5 (59-119)||(8471994-8472054)
chr5 (144-196)||(18704049-18704101)
chr5 (166-202)||(20028497-20028533)
chr5 (59-119)||(20982260-20982320)
chr5 (148-196)||(32408605-32408653)
chr5 (166-202)||(39607513-39607549)
[»] chr1 (27 HSPs)
chr1 (144-196)||(25479586-25479638)
chr1 (144-196)||(39347980-39348032)
chr1 (148-196)||(6279408-6279456)
chr1 (148-196)||(33722414-33722462)
chr1 (146-197)||(4700078-4700129)
chr1 (141-196)||(12564512-12564567)
chr1 (159-190)||(14128493-14128524)
chr1 (161-196)||(48748328-48748363)
chr1 (146-196)||(15558224-15558274)
chr1 (146-196)||(34179885-34179935)
chr1 (148-193)||(5047155-5047200)
chr1 (144-185)||(5924060-5924101)
chr1 (144-193)||(30257688-30257737)
chr1 (167-196)||(35590905-35590934)
chr1 (159-196)||(37818459-37818496)
chr1 (159-196)||(43954058-43954095)
chr1 (144-196)||(3924629-3924681)
chr1 (167-195)||(23402059-23402087)
chr1 (144-196)||(23902080-23902132)
chr1 (59-119)||(24263264-24263324)
chr1 (159-191)||(28083308-28083340)
chr1 (146-194)||(28262634-28262682)
chr1 (144-196)||(31118048-31118100)
chr1 (146-186)||(35350643-35350683)
chr1 (144-196)||(35351044-35351096)
chr1 (167-203)||(44815309-44815345)
chr1 (144-196)||(47598434-47598486)
[»] scaffold0020 (1 HSPs)
scaffold0020 (146-192)||(159990-160036)
[»] chr2 (8 HSPs)
chr2 (148-194)||(41817177-41817223)
chr2 (148-192)||(30552661-30552705)
chr2 (146-193)||(32821816-32821863)
chr2 (146-192)||(4026824-4026870)
chr2 (143-192)||(24097812-24097861)
chr2 (148-193)||(25661116-25661161)
chr2 (62-114)||(3080317-3080369)
chr2 (141-193)||(24141667-24141719)
[»] chr3 (18 HSPs)
chr3 (144-193)||(237402-237451)
chr3 (144-193)||(32064444-32064493)
chr3 (166-202)||(13371144-13371180)
chr3 (144-196)||(27792877-27792929)
chr3 (144-183)||(30322046-30322085)
chr3 (59-118)||(43116554-43116613)
chr3 (146-196)||(12985358-12985408)
chr3 (146-196)||(38462288-38462338)
chr3 (144-194)||(43115061-43115111)
chr3 (167-196)||(5292533-5292562)
chr3 (144-193)||(9279342-9279391)
chr3 (144-193)||(14548737-14548786)
chr3 (167-196)||(21862188-21862217)
chr3 (147-196)||(38952567-38952616)
chr3 (167-196)||(45432952-45432981)
chr3 (146-194)||(20502083-20502131)
chr3 (59-119)||(21574377-21574437)
chr3 (71-119)||(29094278-29094326)
[»] scaffold0089 (1 HSPs)
scaffold0089 (166-202)||(33634-33670)
[»] scaffold0003 (1 HSPs)
scaffold0003 (144-193)||(306331-306380)


Alignment Details
Target: chr7 (Bit Score: 145; Significance: 2e-76; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 22251245 - 22251426
Alignment:
Q  1 acccgagttctgttttgatgatgctacatacccagaacaggtactatcatgctcggtctggataaactatttaattaaatgcttttagcataaatgctta 100  Q
    |||||| |||||||||||||||||| ||||||| ||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  22251245 acccgaattctgttttgatgatgctgcataccccgaacacgtactatcatgctcgatttggataaactatttaattaaatgcttttagcataaatgctta 22251344  T
Q  101 tcatacaagtgtttatgtaatatttcaataacaaaaggggtaggttgttttcataaagtatcctaaagagcttatggaaataag 184  Q
    ||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22251345 tcatacaagtgtttatgt--gatttcaataacaaaaggggtaggttgttttcataaagtatcctaaagagcttatggaaataag 22251426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 22204337 - 22204497
Alignment:
Q  1 acccgagttctgttttgatgatgctacatacccagaacaggtactatcatgctcggtctggataaactatttaattaaatgcttttagcataaatgctta 100  Q
    ||||||||||  ||||||||||| | ||| |||  |||||||||||| ||| ||||| ||||||||||||||||||| |||||| |||||||||||||||    
T  22204337 acccgagttcgattttgatgatgatgcattccctaaacaggtactattatggtcggtttggataaactatttaattatatgcttatagcataaatgctta 22204436  T
Q  101 tcatacaagtgttta-tgtaa--tatttcaataacaaaaggggtaggttgttttcataaag 158  Q
    ||||||||||||||| | |||  ||||||||||| |||||||||||| |||||||||||||    
T  22204437 tcatacaagtgtttagtataagctatttcaataataaaaggggtaggctgttttcataaag 22204497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 22230402 - 22230242
Alignment:
Q  1 acccgagttctgttttgatgatgctacatacccagaacaggtactatcatgctcggtctggataaactatttaattaaatgcttttagcataaatgctta 100  Q
    ||||||||||  ||||||||||| | ||| |||  |||||||||||| ||| ||||| ||||||||||||||||||| |||||| |||||||||||||||    
T  22230402 acccgagttcgattttgatgatgatgcattccctaaacaggtactattatggtcggtttggataaactatttaattatatgcttatagcataaatgctta 22230303  T
Q  101 tcatacaagtgttta-tgtaa--tatttcaataacaaaaggggtaggttgttttcataaag 158  Q
    ||||||||||||||| | |||  ||||||||||| |||||||||||| |||||||||||||    
T  22230302 tcatacaagtgtttagtataagctatttcaataataaaaggggtaggctgttttcataaag 22230242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 159 - 193
Target Start/End: Original strand, 40428575 - 40428609
Alignment:
Q  159 tatcctaaagagcttatggaaataagctgaaaaca 193  Q
    |||||||||||||||||||||||||||||||||||    
T  40428575 tatcctaaagagcttatggaaataagctgaaaaca 40428609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 193
Target Start/End: Complemental strand, 26935618 - 26935573
Alignment:
Q  148 ttttcataaagtatcctaaagagcttatggaaataagctgaaaaca 193  Q
    |||||||||  ||| |||||||||||||||||||||||||||||||    
T  26935618 ttttcataatctattctaaagagcttatggaaataagctgaaaaca 26935573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 193
Target Start/End: Complemental strand, 44151545 - 44151496
Alignment:
Q  144 gttgttttcataaagtatcctaaagagcttatggaaataagctgaaaaca 193  Q
    |||||||||||||| |||| | || |||||||||||||||||||||||||    
T  44151545 gttgttttcataaactatcttgaaaagcttatggaaataagctgaaaaca 44151496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 24363666 - 24363614
Alignment:
Q  144 gttgttttcataaagtatcctaaagagcttatggaaataagctgaaaacaact 196  Q
    |||||||||||||  ||||||  |||| |||||||||||||||||||||||||    
T  24363666 gttgttttcataagctatcctggagaggttatggaaataagctgaaaacaact 24363614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 34754874 - 34754823
Alignment:
Q  144 gttgttttcataaagtatcctaaagagcttatggaaataagctgaaaacaact 196  Q
    |||||||||||||| |||||| | ||||| |||||||||||||||||||||||    
T  34754874 gttgttttcataaactatcctga-gagctgatggaaataagctgaaaacaact 34754823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 191
Target Start/End: Complemental strand, 3610805 - 3610758
Alignment:
Q  144 gttgttttcataaagtatcctaaagagcttatggaaataagctgaaaa 191  Q
    ||||||||| |||| ||||||| ||||||||| |||||||||||||||    
T  3610805 gttgttttcgtaaactatcctagagagcttatagaaataagctgaaaa 3610758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 191
Target Start/End: Complemental strand, 20881701 - 20881654
Alignment:
Q  144 gttgttttcataaagtatcctaaagagcttatggaaataagctgaaaa 191  Q
    |||||||||||||| |||| |||||| |||||| ||||||||||||||    
T  20881701 gttgttttcataaactatcttaaagaacttatgaaaataagctgaaaa 20881654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 196
Target Start/End: Original strand, 4966163 - 4966213
Alignment:
Q  146 tgttttcataaagtatcctaaagagcttatggaaataagctgaaaacaact 196  Q
    |||||||||||   ||||| |||||||||||||||||| ||||||||||||    
T  4966163 tgttttcataagccatcctgaagagcttatggaaataaactgaaaacaact 4966213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 196
Target Start/End: Complemental strand, 27378891 - 27378841
Alignment:
Q  146 tgttttcataaagtatcctaaagagcttatggaaataagctgaaaacaact 196  Q
    |||||||||||| ||||||  |||||||||| |||||| ||||||||||||    
T  27378891 tgttttcataaactatcctggagagcttatgaaaataaactgaaaacaact 27378841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 190
Target Start/End: Complemental strand, 2012675 - 2012634
Alignment:
Q  149 tttcataaagtatcctaaagagcttatggaaataagctgaaa 190  Q
    ||||||||| |||| || ||||||||||||||||||||||||    
T  2012675 tttcataaactatcttagagagcttatggaaataagctgaaa 2012634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 22551606 - 22551529
Alignment:
Q  1 acccgagttctgttttgatgatgctacatacccagaacaggtactatcatgctcggtctggataaactatttaattaa 78  Q
    ||||||||||| |||||| |||| | ||||||| ||||||||||| ||| |||  || ||||||||| | ||||||||    
T  22551606 acccgagttctattttgaagatggtgcataccctgaacaggtactgtcaggctttgtttggataaacaacttaattaa 22551529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 189
Target Start/End: Original strand, 25793255 - 25793296
Alignment:
Q  148 ttttcataaagtatcctaaagagcttatggaaataagctgaa 189  Q
    ||||||||||   |||||||||||||||||||||||||||||    
T  25793255 ttttcataaacagtcctaaagagcttatggaaataagctgaa 25793296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 2825296 - 2825244
Alignment:
Q  144 gttgttttcataaagtatcctaaagagcttatggaaataagctgaaaacaact 196  Q
    |||||||||| ||  ||||||| ||| ||||||||||||||||||||| ||||    
T  2825296 gttgttttcacaagctatcctagagaacttatggaaataagctgaaaataact 2825244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 193
Target Start/End: Complemental strand, 12234937 - 12234905
Alignment:
Q  161 tcctaaagagcttatggaaataagctgaaaaca 193  Q
    ||||| |||||||||||||||||||||||||||    
T  12234937 tcctagagagcttatggaaataagctgaaaaca 12234905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 20553108 - 20553160
Alignment:
Q  144 gttgttttcataaagtatcctaaagagcttatggaaataagctgaaaacaact 196  Q
    |||||||||| ||  |||||||  |||||||||||||||| ||||||||||||    
T  20553108 gttgttttcacaagttatcctagtgagcttatggaaataatctgaaaacaact 20553160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 220
Target Start/End: Original strand, 22204493 - 22204549
Alignment:
Q  164 taaagagcttatggaaataagctgaaaacaactcatacactatgccaaagtgtctta 220  Q
    ||||||||||||| ||||||| |||||||||||| ||  || |||||||| ||||||    
T  22204493 taaagagcttatgaaaataagttgaaaacaactcgtaagctttgccaaagagtctta 22204549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 119
Target Start/End: Complemental strand, 27481479 - 27481419
Alignment:
Q  59 tggataaactatttaattaaatgcttttagcataaatgcttatcatacaagtgtttatgta 119  Q
    ||||||||| | |||||||  ||||| ||||||||||| |||| ||| |||||||||||||    
T  27481479 tggataaacaacttaattaggtgcttatagcataaatgtttattatataagtgtttatgta 27481419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 44910609 - 44910661
Alignment:
Q  144 gttgttttcataaagtatcctaaagagcttatggaaataagctgaaaacaact 196  Q
    |||||||||||||| |||| |  ||||||| ||||||||||| ||||||||||    
T  44910609 gttgttttcataaactatcatggagagcttgtggaaataagccgaaaacaact 44910661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 196
Target Start/End: Complemental strand, 45859587 - 45859539
Alignment:
Q  148 ttttcataaagtatcctaaagagcttatggaaataagctgaaaacaact 196  Q
    |||||||| | |||| | |||||||||| ||||||||||||||||||||    
T  45859587 ttttcatagactatcatgaagagcttatagaaataagctgaaaacaact 45859539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 49219144 - 49219196
Alignment:
Q  144 gttgttttcataaagtatcctaaagagcttatggaaataagctgaaaacaact 196  Q
    |||||||||||||| |||| ||||||| |||||||||||||||||||||||||    
T  49219144 gttgttttcataaactatcttaaagagattatggaaataagctgaaaacaact 49219196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 197
Target Start/End: Original strand, 15969911 - 15969962
Alignment:
Q  146 tgttttcataaagtatcctaaagagcttatggaaataagctgaaaacaactc 197  Q
    |||||||||||| |||||| | || |||||||||||||||||||||||||||    
T  15969911 tgttttcataaactatcctgatgaacttatggaaataagctgaaaacaactc 15969962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 144 - 194
Target Start/End: Original strand, 24929498 - 24929548
Alignment:
Q  144 gttgttttcataaagtatcctaaagagcttatggaaataagctgaaaacaa 194  Q
    |||||||||||||| | | ||| ||||||||||||||||||||||||||||    
T  24929498 gttgttttcataaactctactagagagcttatggaaataagctgaaaacaa 24929548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 145 - 199
Target Start/End: Complemental strand, 45128374 - 45128320
Alignment:
Q  145 ttgttttcataaagtatcctaaagagcttatggaaataagctgaaaacaactcat 199  Q
    ||||||||||||| | ||||| | ||||||||||||||||||||||||| |||||    
T  45128374 ttgttttcataaactgtcctataaagcttatggaaataagctgaaaacagctcat 45128320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 29263375 - 29263427
Alignment:
Q  144 gttgttttcataaagtatcctaaagagcttatggaaataagctgaaaacaact 196  Q
    |||||||||||||  ||||||  ||||||| ||||||||||||||||||||||    
T  29263375 gttgttttcataagctatcctgcagagcttgtggaaataagctgaaaacaact 29263427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 196
Target Start/End: Original strand, 1137722 - 1137769
Alignment:
Q  149 tttcataaagtatcctaaagagcttatggaaataagctgaaaacaact 196  Q
    ||||||||| ||||| | ||||||||||||||||| ||||||||||||    
T  1137722 tttcataaactatccaagagagcttatggaaataaactgaaaacaact 1137769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 196
Target Start/End: Complemental strand, 7694073 - 7694023
Alignment:
Q  146 tgttttcataaagtatcctaaagagcttatggaaataagctgaaaacaact 196  Q
    |||||||||||  ||||||  |||| |||||||||||||||||||||||||    
T  7694073 tgttttcataagttatcctggagagtttatggaaataagctgaaaacaact 7694023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 196
Target Start/End: Complemental strand, 18628606 - 18628556
Alignment:
Q  146 tgttttcataaagtatcctaaagagcttatggaaataagctgaaaacaact 196  Q
    |||||||||||  |||| |  ||||||||||||||||||||||||||||||    
T  18628606 tgttttcataagttatcttggagagcttatggaaataagctgaaaacaact 18628556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 196
Target Start/End: Complemental strand, 2592351 - 2592322
Alignment:
Q  167 agagcttatggaaataagctgaaaacaact 196  Q
    ||||||||||||||||||||||||||||||    
T  2592351 agagcttatggaaataagctgaaaacaact 2592322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 196
Target Start/End: Complemental strand, 5131292 - 5131263
Alignment:
Q  167 agagcttatggaaataagctgaaaacaact 196  Q
    ||||||||||||||||||||||||||||||    
T  5131292 agagcttatggaaataagctgaaaacaact 5131263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 193
Target Start/End: Complemental strand, 11158422 - 11158373
Alignment:
Q  144 gttgttttcataaagtatcctaaagagcttatggaaataagctgaaaaca 193  Q
    |||||||||||||  |||| || ||||||| |||||||||||||||||||    
T  11158422 gttgttttcataagctatcttagagagcttgtggaaataagctgaaaaca 11158373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 193
Target Start/End: Original strand, 11264306 - 11264355
Alignment:
Q  144 gttgttttcataaagtatcctaaagagcttatggaaataagctgaaaaca 193  Q
    |||||||||||||   |||||| |||||||||||||||||| ||||||||    
T  11264306 gttgttttcataagccatcctagagagcttatggaaataagttgaaaaca 11264355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 8468953 - 8469005
Alignment:
Q  144 gttgttttcataaagtatcctaaagagcttatggaaataagctgaaaacaact 196  Q
    |||||||||||||  ||| ||| |||||||||| |||||| ||||||||||||    
T  8468953 gttgttttcataagttattctagagagcttatgaaaataatctgaaaacaact 8469005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 192
Target Start/End: Complemental strand, 24371018 - 24370970
Alignment:
Q  144 gttgttttcataaagtatcctaaagagcttatggaaataagctgaaaac 192  Q
    |||||||||||||  ||||||||| || |||| ||||||||||||||||    
T  24371018 gttgttttcataagctatcctaaatagtttatagaaataagctgaaaac 24370970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 35405949 - 35406001
Alignment:
Q  141 taggttgttttcataaagtatcctaaagagcttatggaaataagctgaaaaca 193  Q
    ||||||||||||| ||  ||||||  ||||||||||||| |||||||||||||    
T  35405949 taggttgttttcaaaagttatcctggagagcttatggaagtaagctgaaaaca 35406001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 196
Target Start/End: Original strand, 6950342 - 6950379
Alignment:
Q  159 tatcctaaagagcttatggaaataagctgaaaacaact 196  Q
    ||||||||||||||||||||||||||||||||||||||    
T  6950342 tatcctaaagagcttatggaaataagctgaaaacaact 6950379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 146 - 196
Target Start/End: Complemental strand, 30277308 - 30277258
Alignment:
Q  146 tgttttcataaagtatcctaaagagcttatggaaataagctgaaaacaact 196  Q
    |||||||||||  ||||||| |||| |||||||||||||||||||||||||    
T  30277308 tgttttcataagctatcctagagagtttatggaaataagctgaaaacaact 30277258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 191
Target Start/End: Complemental strand, 8535833 - 8535788
Alignment:
Q  146 tgttttcataaagtatcctaaagagcttatggaaataagctgaaaa 191  Q
    |||||||||||| ||||||| |||||||||||||||||||| ||||    
T  8535833 tgttttcataaattatcctagagagcttatggaaataagcttaaaa 8535788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 196
Target Start/End: Complemental strand, 41606953 - 41606916
Alignment:
Q  159 tatcctaaagagcttatggaaataagctgaaaacaact 196  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  41606953 tatcctagagagcttatggaaataagctgaaaacaact 41606916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 203
Target Start/End: Original strand, 4762514 - 4762573
Alignment:
Q  144 gttgttttcataaagtatcctaaagagcttatggaaataagctgaaaacaactcatacac 203  Q
    |||||||||||||  |||| | ||||||||||| ||||||||||||||||| | ||||||    
T  4762514 gttgttttcataagctatcttgaagagcttatgtaaataagctgaaaacaatttatacac 4762573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 193
Target Start/End: Original strand, 31862500 - 31862547
Alignment:
Q  146 tgttttcataaagtatcctaaagagcttatggaaataagctgaaaaca 193  Q
    |||||||||||  ||||||| |||||||||| ||||||||||||||||    
T  31862500 tgttttcataagttatcctagagagcttatgaaaataagctgaaaaca 31862547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 192
Target Start/End: Complemental strand, 2235719 - 2235673
Alignment:
Q  146 tgttttcataaagtatcctaaagagcttatggaaataagctgaaaac 192  Q
    ||||||||||| ||||| |||||||||||||||||| |||| |||||    
T  2235719 tgttttcataaggtatcttaaagagcttatggaaatgagctaaaaac 2235673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 196
Target Start/End: Original strand, 8060676 - 8060726
Alignment:
Q  146 tgttttcataaagtatcctaaagagcttatggaaataagctgaaaacaact 196  Q
    |||||||||||   |||||| ||||||||||||||||||||||||| ||||    
T  8060676 tgttttcataagcaatcctagagagcttatggaaataagctgaaaataact 8060726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 199
Target Start/End: Original strand, 7039837 - 7039870
Alignment:
Q  166 aagagcttatggaaataagctgaaaacaactcat 199  Q
    ||||||||||||||||||| ||||||||||||||    
T  7039837 aagagcttatggaaataagttgaaaacaactcat 7039870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 193
Target Start/End: Original strand, 13459650 - 13459699
Alignment:
Q  144 gttgttttcataaagtatcctaaagagcttatggaaataagctgaaaaca 193  Q
    ||||||||||||||  |||||| |||||||||| ||||| ||||||||||    
T  13459650 gttgttttcataaatcatcctacagagcttatgaaaataggctgaaaaca 13459699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 193
Target Start/End: Original strand, 14949875 - 14949920
Alignment:
Q  148 ttttcataaagtatcctaaagagcttatggaaataagctgaaaaca 193  Q
    |||||||||  |||||||||||| |||| |||||||||||||||||    
T  14949875 ttttcataagctatcctaaagagattatagaaataagctgaaaaca 14949920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 196
Target Start/End: Original strand, 30918141 - 30918170
Alignment:
Q  167 agagcttatggaaataagctgaaaacaact 196  Q
    ||||||||||||||||||||||||||||||    
T  30918141 agagcttatggaaataagctgaaaacaact 30918170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 193
Target Start/End: Complemental strand, 2458630 - 2458582
Alignment:
Q  145 ttgttttcataaagtatcctaaagagcttatggaaataagctgaaaaca 193  Q
    |||||| |||||  ||||||| ||||||||||||||||| |||||||||    
T  2458630 ttgtttacataagctatcctagagagcttatggaaataaactgaaaaca 2458582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 196
Target Start/End: Complemental strand, 11000625 - 11000589
Alignment:
Q  160 atcctaaagagcttatggaaataagctgaaaacaact 196  Q
    ||||| |||||||||||||||||||||||| ||||||    
T  11000625 atcctgaagagcttatggaaataagctgaagacaact 11000589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 7931854 - 7931802
Alignment:
Q  144 gttgttttcataaagtatcctaaagagcttatggaaataagctgaaaacaact 196  Q
    |||||||||| ||  ||||||| ||||||||||||||||||||||||||||||    
T  7931854 gttgttttcacaagctatcctatagagcttatggaaataagctgaaaacaact 7931802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 202
Target Start/End: Complemental strand, 20512687 - 20512651
Alignment:
Q  166 aagagcttatggaaataagctgaaaacaactcataca 202  Q
    ||||||||||||||||||||||||||||||| |||||    
T  20512687 aagagcttatggaaataagctgaaaacaacttataca 20512651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 196
Target Start/End: Original strand, 6536956 - 6537004
Alignment:
Q  146 tgttttcataaagtatcctaaagagcttatggaaataagctgaaaacaact 196  Q
    ||||||||||||  || || |||||||||||||||||||||||||||||||    
T  6536956 tgttttcataaa--attctgaagagcttatggaaataagctgaaaacaact 6537004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 196
Target Start/End: Complemental strand, 7931790 - 7931739
Alignment:
Q  145 ttgttttcataaagtatcctaaagagcttatggaaataagctgaaaacaact 196  Q
    ||||||||| ||  ||||||| |||||||| |||||||||||||||||||||    
T  7931790 ttgttttcaaaagctatcctacagagcttacggaaataagctgaaaacaact 7931739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 196
Target Start/End: Complemental strand, 25103343 - 25103292
Alignment:
Q  145 ttgttttcataaagtatcctaaagagcttatggaaataagctgaaaacaact 196  Q
    ||||||||||||  |||||||||||||||| | |||||| ||||||||||||    
T  25103343 ttgttttcataagatatcctaaagagcttaagaaaataaactgaaaacaact 25103292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 196
Target Start/End: Complemental strand, 281907 - 281861
Alignment:
Q  150 ttcataaagtatcctaaagagcttatggaaataagctgaaaacaact 196  Q
    |||||||  ||||||| |||||| |||||||||||||||||||||||    
T  281907 ttcataagctatcctagagagctcatggaaataagctgaaaacaact 281861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 196
Target Start/End: Original strand, 30523948 - 30523994
Alignment:
Q  150 ttcataaagtatcctaaagagcttatggaaataagctgaaaacaact 196  Q
    |||||||  |||||||||||||||||||||||||||| ||| |||||    
T  30523948 ttcataagctatcctaaagagcttatggaaataagctaaaagcaact 30523994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 196
Target Start/End: Complemental strand, 31671137 - 31671087
Alignment:
Q  146 tgttttcataaagtatcctaaagagcttatggaaataagctgaaaacaact 196  Q
    ||||||| |||| ||||||| | |||||||| |||||||||||||||||||    
T  31671137 tgttttcgtaaactatcctagatagcttatgaaaataagctgaaaacaact 31671087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 193
Target Start/End: Original strand, 2117408 - 2117457
Alignment:
Q  144 gttgttttcataaagtatcctaaagagcttatggaaataagctgaaaaca 193  Q
    |||||||||||||  ||||||| ||||||||| |||||||||| ||||||    
T  2117408 gttgttttcataagttatcctagagagcttattgaaataagctaaaaaca 2117457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 196
Target Start/End: Complemental strand, 7785786 - 7785757
Alignment:
Q  167 agagcttatggaaataagctgaaaacaact 196  Q
    ||||||||||||||||||||||||||||||    
T  7785786 agagcttatggaaataagctgaaaacaact 7785757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 196
Target Start/End: Complemental strand, 27909680 - 27909651
Alignment:
Q  167 agagcttatggaaataagctgaaaacaact 196  Q
    ||||||||||||||||||||||||||||||    
T  27909680 agagcttatggaaataagctgaaaacaact 27909651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 196
Target Start/End: Original strand, 34939533 - 34939570
Alignment:
Q  159 tatcctaaagagcttatggaaataagctgaaaacaact 196  Q
    |||||| ||||| |||||||||||||||||||||||||    
T  34939533 tatcctgaagaggttatggaaataagctgaaaacaact 34939570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 5952033 - 5951981
Alignment:
Q  144 gttgttttcataaagtatcctaaagagcttatggaaataagctgaaaacaact 196  Q
    |||||||||||||| ||| || || ||||||||||||||||||||||||||||    
T  5952033 gttgttttcataaattatactgaatagcttatggaaataagctgaaaacaact 5951981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 193
Target Start/End: Complemental strand, 17258946 - 17258899
Alignment:
Q  146 tgttttcataaagtatcctaaagagcttatggaaataagctgaaaaca 193  Q
    |||||||||||| |||||| ||||||||||| ||||||||||||||||    
T  17258946 tgttttcataaactatcctgaagagcttatgaaaataagctgaaaaca 17258899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 199
Target Start/End: Complemental strand, 1084184 - 1084131
Alignment:
Q  146 tgttttcataaagtatcctaaagagcttatggaaataagctgaaaacaactcat 199  Q
    |||||||||||  |||| | ||||||||||||||||||||| ||||||||||||    
T  1084184 tgttttcataacatatcatgaagagcttatggaaataagctaaaaacaactcat 1084131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 191
Target Start/End: Original strand, 36638754 - 36638799
Alignment:
Q  146 tgttttcataaagtatcctaaagagcttatggaaataagctgaaaa 191  Q
    |||||||||||  ||||||| |||||||||||||||||||||||||    
T  36638754 tgttttcataagttatcctagagagcttatggaaataagctgaaaa 36638799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 193
Target Start/End: Original strand, 11615508 - 11615555
Alignment:
Q  146 tgttttcataaagtatcctaaagagcttatggaaataagctgaaaaca 193  Q
    |||||||||||  |||||| | ||||||||||||||||||||||||||    
T  11615508 tgttttcataagatatccttatgagcttatggaaataagctgaaaaca 11615555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 199
Target Start/End: Complemental strand, 18543261 - 18543207
Alignment:
Q  144 gttgttttcataaagtatcctaaagagcttatggaaataagctgaaaacaactcat 199  Q
    |||||||||||||  ||||||  |||||||||| ||||||||||||||||||||||    
T  18543261 gttgttttcataagctatcctggagagcttatg-aaataagctgaaaacaactcat 18543207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 199
Target Start/End: Complemental strand, 32059420 - 32059369
Alignment:
Q  148 ttttcataaagtatcctaaagagcttatggaaataagctgaaaacaactcat 199  Q
    |||||||||  ||||||| ||| ||||| |||||||||||||||||||||||    
T  32059420 ttttcataagctatcctagagaacttatcgaaataagctgaaaacaactcat 32059369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 196
Target Start/End: Complemental strand, 38104917 - 38104870
Alignment:
Q  149 tttcataaagtatcctaaagagcttatggaaataagctgaaaacaact 196  Q
    ||||||||  |||| || ||||||||||||||||||||||||||||||    
T  38104917 tttcataagctatcttagagagcttatggaaataagctgaaaacaact 38104870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 196
Target Start/End: Original strand, 3237100 - 3237150
Alignment:
Q  146 tgttttcataaagtatcctaaagagcttatggaaataagctgaaaacaact 196  Q
    |||||||||||  |||||||||||||||||| ||||| |||||| ||||||    
T  3237100 tgttttcataagctatcctaaagagcttatgaaaatatgctgaacacaact 3237150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 193
Target Start/End: Original strand, 4855703 - 4855752
Alignment:
Q  144 gttgttttcataaagtatcctaaagagcttatggaaataagctgaaaaca 193  Q
    |||||||||||||| ||||| ||||||||||  ||||||||| |||||||    
T  4855703 gttgttttcataaactatcccaaagagcttacagaaataagccgaaaaca 4855752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 193
Target Start/End: Original strand, 8985670 - 8985715
Alignment:
Q  148 ttttcataaagtatcctaaagagcttatggaaataagctgaaaaca 193  Q
    |||||||||  ||||||| |||||||||||||| ||||||||||||    
T  8985670 ttttcataagctatcctatagagcttatggaaagaagctgaaaaca 8985715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 193
Target Start/End: Complemental strand, 37588425 - 37588376
Alignment:
Q  144 gttgttttcataaagtatcctaaagagcttatggaaataagctgaaaaca 193  Q
    |||||||||||||  ||| ||  |||||||||||||||||||||||||||    
T  37588425 gttgttttcataagttattctggagagcttatggaaataagctgaaaaca 37588376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 193
Target Start/End: Complemental strand, 40205139 - 40205090
Alignment:
Q  144 gttgttttcataaagtatcctaaagagcttatggaaataagctgaaaaca 193  Q
    |||||||||||||  ||||||  ||||||||| |||||||||||||||||    
T  40205139 gttgttttcataagctatcctggagagcttatagaaataagctgaaaaca 40205090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 119
Target Start/End: Original strand, 8471994 - 8472054
Alignment:
Q  59 tggataaactatttaattaaatgcttttagcataaatgcttatcatacaagtgtttatgta 119  Q
    ||||||||| |  ||||||||||||||||||||||   ||||||||| || ||||||||||    
T  8471994 tggataaacaacgtaattaaatgcttttagcataagcacttatcatataaatgtttatgta 8472054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 18704101 - 18704049
Alignment:
Q  144 gttgttttcataaagtatcctaaagagcttatggaaataagctgaaaacaact 196  Q
    |||||||||||||  |||   ||||| ||||||||||||||||||||||||||    
T  18704101 gttgttttcataagctattacaaagatcttatggaaataagctgaaaacaact 18704049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 202
Target Start/End: Complemental strand, 20028533 - 20028497
Alignment:
Q  166 aagagcttatggaaataagctgaaaacaactcataca 202  Q
    |||||||||| |||||||||||||||||||| |||||    
T  20028533 aagagcttatagaaataagctgaaaacaacttataca 20028497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 119
Target Start/End: Complemental strand, 20982320 - 20982260
Alignment:
Q  59 tggataaactatttaattaaatgcttttagcataaatgcttatcatacaagtgtttatgta 119  Q
    ||||||||| | || ||||| ||||| |||||||| ||||||||||| ||||| |||||||    
T  20982320 tggataaacaacttcattaagtgcttatagcataagtgcttatcatataagtgcttatgta 20982260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 196
Target Start/End: Complemental strand, 32408653 - 32408605
Alignment:
Q  148 ttttcataaagtatcctaaagagcttatggaaataagctgaaaacaact 196  Q
    |||||||||  |||||| |||||||||||||||||||| |||| |||||    
T  32408653 ttttcataagctatcctgaagagcttatggaaataagcagaaaccaact 32408605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 202
Target Start/End: Original strand, 39607513 - 39607549
Alignment:
Q  166 aagagcttatggaaataagctgaaaacaactcataca 202  Q
    |||||||||| |||||||||||||||||||| |||||    
T  39607513 aagagcttatcgaaataagctgaaaacaacttataca 39607549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 25479586 - 25479638
Alignment:
Q  144 gttgttttcataaagtatcctaaagagcttatggaaataagctgaaaacaact 196  Q
    |||||||||||||  ||||||| |||||||||| |||||||||||||||||||    
T  25479586 gttgttttcataagctatcctagagagcttatgaaaataagctgaaaacaact 25479638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 39348032 - 39347980
Alignment:
Q  144 gttgttttcataaagtatcctaaagagcttatggaaataagctgaaaacaact 196  Q
    |||||||||||||| ||||||  | ||||||||||||||||||||||||||||    
T  39348032 gttgttttcataaactatcctgcaaagcttatggaaataagctgaaaacaact 39347980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 196
Target Start/End: Original strand, 6279408 - 6279456
Alignment:
Q  148 ttttcataaagtatcctaaagagcttatggaaataagctgaaaacaact 196  Q
    |||||||||  ||||||| |||||||||||||||| |||||||||||||    
T  6279408 ttttcataagctatcctagagagcttatggaaatacgctgaaaacaact 6279456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 196
Target Start/End: Complemental strand, 33722462 - 33722414
Alignment:
Q  148 ttttcataaagtatcctaaagagcttatggaaataagctgaaaacaact 196  Q
    |||||||||  ||||||| |||| |||||||||||||||||||||||||    
T  33722462 ttttcataagttatcctacagaggttatggaaataagctgaaaacaact 33722414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 197
Target Start/End: Complemental strand, 4700129 - 4700078
Alignment:
Q  146 tgttttcataaagtatcctaaagagcttatggaaataagctgaaaacaactc 197  Q
    |||||| ||||| ||||||  |||||||||| ||||||||||||||||||||    
T  4700129 tgtttttataaactatcctggagagcttatgaaaataagctgaaaacaactc 4700078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 196
Target Start/End: Complemental strand, 12564567 - 12564512
Alignment:
Q  141 taggttgttttcataaagtatcctaaagagcttatggaaataagctgaaaacaact 196  Q
    ||||||||||||||||  |||| |  ||| ||||||||||||||||||||||||||    
T  12564567 taggttgttttcataagctatcttggagaacttatggaaataagctgaaaacaact 12564512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 190
Target Start/End: Complemental strand, 14128524 - 14128493
Alignment:
Q  159 tatcctaaagagcttatggaaataagctgaaa 190  Q
    ||||||||||||||||||||||||||||||||    
T  14128524 tatcctaaagagcttatggaaataagctgaaa 14128493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 196
Target Start/End: Complemental strand, 48748363 - 48748328
Alignment:
Q  161 tcctaaagagcttatggaaataagctgaaaacaact 196  Q
    |||| |||||||||||||||||||||||||||||||    
T  48748363 tcctgaagagcttatggaaataagctgaaaacaact 48748328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 196
Target Start/End: Original strand, 15558224 - 15558274
Alignment:
Q  146 tgttttcataaagtatcctaaagagcttatggaaataagctgaaaacaact 196  Q
    |||||||||||  ||||||| ||| ||||| ||||||||||||||||||||    
T  15558224 tgttttcataagatatcctagagaacttatagaaataagctgaaaacaact 15558274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 196
Target Start/End: Complemental strand, 34179935 - 34179885
Alignment:
Q  146 tgttttcataaagtatcctaaagagcttatggaaataagctgaaaacaact 196  Q
    |||||||||||| |||||| || || ||||||||||| |||||||||||||    
T  34179935 tgttttcataaactatcctgaaaagtttatggaaatacgctgaaaacaact 34179885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 193
Target Start/End: Original strand, 5047155 - 5047200
Alignment:
Q  148 ttttcataaagtatcctaaagagcttatggaaataagctgaaaaca 193  Q
    |||||||||  |||| | ||||||||||||||||||||||||||||    
T  5047155 ttttcataagctatcatgaagagcttatggaaataagctgaaaaca 5047200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 185
Target Start/End: Original strand, 5924060 - 5924101
Alignment:
Q  144 gttgttttcataaagtatcctaaagagcttatggaaataagc 185  Q
    |||||||||||||  ||||||| |||||||||||||||||||    
T  5924060 gttgttttcataagttatcctagagagcttatggaaataagc 5924101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 193
Target Start/End: Original strand, 30257688 - 30257737
Alignment:
Q  144 gttgttttcataaagtatcctaaagagcttatggaaataagctgaaaaca 193  Q
    |||||||||||||| ||||||  || |||||| |||||||||||||||||    
T  30257688 gttgttttcataaactatcctggagggcttatagaaataagctgaaaaca 30257737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 196
Target Start/End: Complemental strand, 35590934 - 35590905
Alignment:
Q  167 agagcttatggaaataagctgaaaacaact 196  Q
    ||||||||||||||||||||||||||||||    
T  35590934 agagcttatggaaataagctgaaaacaact 35590905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 196
Target Start/End: Original strand, 37818459 - 37818496
Alignment:
Q  159 tatcctaaagagcttatggaaataagctgaaaacaact 196  Q
    ||||||| ||| ||||||||||||||||||||||||||    
T  37818459 tatcctagagaacttatggaaataagctgaaaacaact 37818496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 196
Target Start/End: Complemental strand, 43954095 - 43954058
Alignment:
Q  159 tatcctaaagagcttatggaaataagctgaaaacaact 196  Q
    |||||| ||||||||||||| |||||||||||||||||    
T  43954095 tatcctgaagagcttatggagataagctgaaaacaact 43954058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 3924629 - 3924681
Alignment:
Q  144 gttgttttcataaagtatcctaaagagcttatggaaataagctgaaaacaact 196  Q
    |||||||| ||||  |||||| ||||| |||||||||||||| ||||||||||    
T  3924629 gttgtttttataagctatcctgaagagtttatggaaataagccgaaaacaact 3924681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 195
Target Start/End: Original strand, 23402059 - 23402087
Alignment:
Q  167 agagcttatggaaataagctgaaaacaac 195  Q
    |||||||||||||||||||||||||||||    
T  23402059 agagcttatggaaataagctgaaaacaac 23402087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 23902132 - 23902080
Alignment:
Q  144 gttgttttcataaagtatcctaaagagcttatggaaataagctgaaaacaact 196  Q
    |||||||||| ||  |||| || ||||||||||||| ||||||||||||||||    
T  23902132 gttgttttcaaaagctatcttagagagcttatggaagtaagctgaaaacaact 23902080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 119
Target Start/End: Complemental strand, 24263324 - 24263264
Alignment:
Q  59 tggataaactatttaattaaatgcttttagcataaatgcttatcatacaagtgtttatgta 119  Q
    |||||||||  ||||||||| ||||| ||||||||| | ||| |||| |||||||||||||    
T  24263324 tggataaacagtttaattaagtgcttatagcataaacgtttagcatataagtgtttatgta 24263264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 191
Target Start/End: Complemental strand, 28083340 - 28083308
Alignment:
Q  159 tatcctaaagagcttatggaaataagctgaaaa 191  Q
    |||||||||||||||||| ||||||||||||||    
T  28083340 tatcctaaagagcttatgaaaataagctgaaaa 28083308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 194
Target Start/End: Complemental strand, 28262682 - 28262634
Alignment:
Q  146 tgttttcataaagtatcctaaagagcttatggaaataagctgaaaacaa 194  Q
    |||||||||||  ||||||| ||| |||||||||||||||| |||||||    
T  28262682 tgttttcataagttatcctatagaacttatggaaataagctaaaaacaa 28262634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 31118048 - 31118100
Alignment:
Q  144 gttgttttcataaagtatcctaaagagcttatggaaataagctgaaaacaact 196  Q
    |||||||||||||  || ||| | || ||||||||||||||||||||||||||    
T  31118048 gttgttttcataagctaccctgatgaacttatggaaataagctgaaaacaact 31118100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 186
Target Start/End: Original strand, 35350643 - 35350683
Alignment:
Q  146 tgttttcataaagtatcctaaagagcttatggaaataagct 186  Q
    |||||||||||  |||||||||||||||||| |||||||||    
T  35350643 tgttttcataagctatcctaaagagcttatgtaaataagct 35350683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 35351044 - 35351096
Alignment:
Q  144 gttgttttcataaagtatcctaaagagcttatggaaataagctgaaaacaact 196  Q
    ||||| |||||||| ||||||| ||||||||   |||||||||||||||||||    
T  35351044 gttgtcttcataaactatcctagagagcttacaaaaataagctgaaaacaact 35351096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 44815345 - 44815309
Alignment:
Q  167 agagcttatggaaataagctgaaaacaactcatacac 203  Q
    |||||||||||||||||||||||||||| | ||||||    
T  44815345 agagcttatggaaataagctgaaaacaatttatacac 44815309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 47598486 - 47598434
Alignment:
Q  144 gttgttttcataaagtatcctaaagagcttatggaaataagctgaaaacaact 196  Q
    |||||||||||||  ||||||  ||||||||||| || |||||||||||||||    
T  47598486 gttgttttcataagctatcctggagagcttatggcaacaagctgaaaacaact 47598434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 146 - 192
Target Start/End: Complemental strand, 160036 - 159990
Alignment:
Q  146 tgttttcataaagtatcctaaagagcttatggaaataagctgaaaac 192  Q
    |||||||||||  ||||||||||||||| ||||||||||||||||||    
T  160036 tgttttcataagctatcctaaagagcttgtggaaataagctgaaaac 159990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 148 - 194
Target Start/End: Original strand, 41817177 - 41817223
Alignment:
Q  148 ttttcataaagtatcctaaagagcttatggaaataagctgaaaacaa 194  Q
    |||||||||| ||||||  ||||||||||||||||||||||||||||    
T  41817177 ttttcataaactatcctggagagcttatggaaataagctgaaaacaa 41817223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 30552705 - 30552661
Alignment:
Q  148 ttttcataaagtatcctaaagagcttatggaaataagctgaaaac 192  Q
    |||||||||| ||||||| |||||||||||||||||||| |||||    
T  30552705 ttttcataaactatcctagagagcttatggaaataagctaaaaac 30552661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 193
Target Start/End: Original strand, 32821816 - 32821863
Alignment:
Q  146 tgttttcataaagtatcctaaagagcttatggaaataagctgaaaaca 193  Q
    |||||||||||  ||||||||||||||||| ||||||| |||||||||    
T  32821816 tgttttcataagctatcctaaagagcttatagaaataaactgaaaaca 32821863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 192
Target Start/End: Original strand, 4026824 - 4026870
Alignment:
Q  146 tgttttcataaagtatcctaaagagcttatggaaataagctgaaaac 192  Q
    |||||||||||| |||||| |||| |||||| |||||||||||||||    
T  4026824 tgttttcataaattatcctgaagaacttatgaaaataagctgaaaac 4026870  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 192
Target Start/End: Original strand, 24097812 - 24097861
Alignment:
Q  143 ggttgttttcataaagtatcctaaagagcttatggaaataagctgaaaac 192  Q
    ||||||||||||||  ||||||  |||||||||| |||||||||||||||    
T  24097812 ggttgttttcataagttatcctggagagcttatgaaaataagctgaaaac 24097861  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 193
Target Start/End: Original strand, 25661116 - 25661161
Alignment:
Q  148 ttttcataaagtatcctaaagagcttatggaaataagctgaaaaca 193  Q
    ||||| |||| |||||| |||||||||||||||||| |||||||||    
T  25661116 ttttcgtaaactatcctgaagagcttatggaaataatctgaaaaca 25661161  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 114
Target Start/End: Complemental strand, 3080369 - 3080317
Alignment:
Q  62 ataaactatttaattaaatgcttttagcataaatgcttatcatacaagtgttt 114  Q
    |||||| | |||||||| ||||| |||||||| ||||||| ||||||||||||    
T  3080369 ataaacaaattaattaagtgcttatagcataactgcttattatacaagtgttt 3080317  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 24141719 - 24141667
Alignment:
Q  141 taggttgttttcataaagtatcctaaagagcttatggaaataagctgaaaaca 193  Q
    |||||||||| |||||  ||||||| |||||||||| ||| ||||||||||||    
T  24141719 taggttgtttacataagctatcctatagagcttatgaaaacaagctgaaaaca 24141667  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 193
Target Start/End: Original strand, 237402 - 237451
Alignment:
Q  144 gttgttttcataaagtatcctaaagagcttatggaaataagctgaaaaca 193  Q
    |||||||||||||  ||||||| |||||||| ||||||||||||||||||    
T  237402 gttgttttcataagttatcctatagagcttacggaaataagctgaaaaca 237451  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 193
Target Start/End: Original strand, 32064444 - 32064493
Alignment:
Q  144 gttgttttcataaagtatcctaaagagcttatggaaataagctgaaaaca 193  Q
    ||||| |||||||| |||||||||||||||||| ||||||| ||||||||    
T  32064444 gttgtgttcataaactatcctaaagagcttatgaaaataagttgaaaaca 32064493  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 202
Target Start/End: Original strand, 13371144 - 13371180
Alignment:
Q  166 aagagcttatggaaataagctgaaaacaactcataca 202  Q
    ||||||||||||||||||||||||||||||| |||||    
T  13371144 aagagcttatggaaataagctgaaaacaacttataca 13371180  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 27792877 - 27792929
Alignment:
Q  144 gttgttttcataaagtatcctaaagagcttatggaaataagctgaaaacaact 196  Q
    |||||||||||||| |||| |  ||||||||| ||||||||||||||||||||    
T  27792877 gttgttttcataaactatcatgtagagcttatagaaataagctgaaaacaact 27792929  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 183
Target Start/End: Complemental strand, 30322085 - 30322046
Alignment:
Q  144 gttgttttcataaagtatcctaaagagcttatggaaataa 183  Q
    |||||||||||||  |||||||||||||||||||||||||    
T  30322085 gttgttttcataagttatcctaaagagcttatggaaataa 30322046  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 118
Target Start/End: Complemental strand, 43116613 - 43116554
Alignment:
Q  59 tggataaactatttaattaaatgcttttagcataaatgcttatcatacaagtgtttatgt 118  Q
    ||||||||| | |||||| | || || ||||||||||| |||||||||||||||||||||    
T  43116613 tggataaacaacttaatttagtgtttatagcataaatgtttatcatacaagtgtttatgt 43116554  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 196
Target Start/End: Complemental strand, 12985408 - 12985358
Alignment:
Q  146 tgttttcataaagtatcctaaagagcttatggaaataagctgaaaacaact 196  Q
    |||||||||||  |||||| |||| ||||||||||||||| ||||||||||    
T  12985408 tgttttcataagctatcctcaagaacttatggaaataagccgaaaacaact 12985358  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 196
Target Start/End: Original strand, 38462288 - 38462338
Alignment:
Q  146 tgttttcataaagtatcctaaagagcttatggaaataagctgaaaacaact 196  Q
    |||||||||||  ||||| | | ||||||||||||||||||||||||||||    
T  38462288 tgttttcataagctatccaagatagcttatggaaataagctgaaaacaact 38462338  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 194
Target Start/End: Original strand, 43115061 - 43115111
Alignment:
Q  144 gttgttttcataaagtatcctaaagagcttatggaaataagctgaaaacaa 194  Q
    ||||||||||| || |||| |  ||||||||||||||||||||||||||||    
T  43115061 gttgttttcatgaactatcattgagagcttatggaaataagctgaaaacaa 43115111  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 196
Target Start/End: Complemental strand, 5292562 - 5292533
Alignment:
Q  167 agagcttatggaaataagctgaaaacaact 196  Q
    ||||||||||||||||||||||||||||||    
T  5292562 agagcttatggaaataagctgaaaacaact 5292533  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 193
Target Start/End: Complemental strand, 9279391 - 9279342
Alignment:
Q  144 gttgttttcataaagtatcctaaagagcttatggaaataagctgaaaaca 193  Q
    |||||||||||||| |||| | ||||| ||| ||||||||||||||||||    
T  9279391 gttgttttcataaactatcatgaagagtttaaggaaataagctgaaaaca 9279342  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 193
Target Start/End: Complemental strand, 14548786 - 14548737
Alignment:
Q  144 gttgttttcataaagtatcctaaagagcttatggaaataagctgaaaaca 193  Q
    |||||||||||||  ||| ||  |||||||||||||||||||||||||||    
T  14548786 gttgttttcataagttattctggagagcttatggaaataagctgaaaaca 14548737  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 196
Target Start/End: Complemental strand, 21862217 - 21862188
Alignment:
Q  167 agagcttatggaaataagctgaaaacaact 196  Q
    ||||||||||||||||||||||||||||||    
T  21862217 agagcttatggaaataagctgaaaacaact 21862188  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 196
Target Start/End: Complemental strand, 38952616 - 38952567
Alignment:
Q  147 gttttcataaagtatcctaaagagcttatggaaataagctgaaaacaact 196  Q
    ||||||||||| ||||| |||||| |||| ||| ||||||||||||||||    
T  38952616 gttttcataaactatcccaaagagtttattgaattaagctgaaaacaact 38952567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 196
Target Start/End: Complemental strand, 45432981 - 45432952
Alignment:
Q  167 agagcttatggaaataagctgaaaacaact 196  Q
    ||||||||||||||||||||||||||||||    
T  45432981 agagcttatggaaataagctgaaaacaact 45432952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 194
Target Start/End: Complemental strand, 20502131 - 20502083
Alignment:
Q  146 tgttttcataaagtatcctaaagagcttatggaaataagctgaaaacaa 194  Q
    |||||||||||  |||||| |||||||||||  ||||||||||||||||    
T  20502131 tgttttcataagctatcctgaagagcttatgagaataagctgaaaacaa 20502083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 119
Target Start/End: Original strand, 21574377 - 21574437
Alignment:
Q  59 tggataaactatttaattaaatgcttttagcataaatgcttatcatacaagtgtttatgta 119  Q
    ||||||||||| |||||||| ||||| ||| ||||| |||| ||||  |||||||||||||    
T  21574377 tggataaactacttaattaagtgcttatagtataaacgcttctcatgtaagtgtttatgta 21574437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 29094278 - 29094326
Alignment:
Q  71 ttaattaaatgcttttagcataaatgcttatcatacaagtgtttatgta 119  Q
    ||||||||| |||| |||||||||  ||||||||| |||||||||||||    
T  29094278 ttaattaaacgcttatagcataaacacttatcatataagtgtttatgta 29094326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0089 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0089
Description:

Target: scaffold0089; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 202
Target Start/End: Complemental strand, 33670 - 33634
Alignment:
Q  166 aagagcttatggaaataagctgaaaacaactcataca 202  Q
    ||||||||||||||||||||||||||||||| |||||    
T  33670 aagagcttatggaaataagctgaaaacaacttataca 33634  T

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Target: scaffold0003 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 193
Target Start/End: Original strand, 306331 - 306380
Alignment:
Q  144 gttgttttcataaagtatcctaaagagcttatggaaataagctgaaaaca 193  Q
    |||||||||||||  ||||||| |||||||||| || |||||||||||||    
T  306331 gttgttttcataagctatcctagagagcttatgtaagtaagctgaaaaca 306380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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