View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16629_low_63 (Length: 239)
Name: NF16629_low_63
Description: NF16629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16629_low_63 |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 15807253 - 15807481
Alignment:
| Q |
1 |
aaaactacccatccaacctttgttccacaacactgaggaactctttccaacatagcctccaaacactgtcggcagccatccttactaagctcggtattac |
100 |
Q |
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| T |
15807253 |
aaaactacccatccaacctttgttccacaacactgaggaactctttccaacatagcctccaaacactgtcggcagccatccttactaagctcggtattac |
15807352 |
T |
|
| Q |
101 |
actgcaccaagccataccttttgtcagtgtcactccaattgaactcatcagttgcccaattgagactcgctactgtagtcactttgcgtatcaaactcgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15807353 |
actgcaccaagccataccttttgtcagtgtcactccaattgaactcatcagttgcccaattgagactcgctactgtagtcactttgcgtatcaaactcgt |
15807452 |
T |
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| Q |
201 |
catgctattctcagctttcacaggttctg |
229 |
Q |
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||||||||||||||||||| || |||||| |
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| T |
15807453 |
catgctattctcagctttcccaagttctg |
15807481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 3 - 229
Target Start/End: Original strand, 15793837 - 15794063
Alignment:
| Q |
3 |
aactacccatccaacctttgttccacaacactgaggaactctttccaacatagcctccaaacactgtcggcagccatccttactaagctcggtattacac |
102 |
Q |
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||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||| || |||||||||||||| || |||||||| |
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| T |
15793837 |
aactacccatccaacctttgttccacagcactgtggaactctatccaacatagcctccaaacactgtctacacccatccttactaaggtctctattacac |
15793936 |
T |
|
| Q |
103 |
tgcaccaagccataccttttgtcagtgtcactccaattgaactcatcagttgcccaattgagactcgctactgtagtcactttgcgtatcaaactcgtca |
202 |
Q |
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| T |
15793937 |
tgcaccataccataccttttctcagtgtcactccaattgaactcacccattgcccaattgggattgccttctgtcgtcacttttcgtatcaaactcatca |
15794036 |
T |
|
| Q |
203 |
tgctattctcagctttcacaggttctg |
229 |
Q |
| |
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|| ||||||||| |||| || |||||| |
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| T |
15794037 |
tgttattctcagatttcgcaagttctg |
15794063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 16 - 229
Target Start/End: Original strand, 15801649 - 15801862
Alignment:
| Q |
16 |
acctttgttccacaacactgaggaactctttccaacatagcctccaaacactgtcggcagccatccttactaagctcggtattacactgcaccaagccat |
115 |
Q |
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||||||||||||||||||||||||||| |||||||||||||| | ||||| | ||| |||||||||||||| || |||||||||||||||| |||| |
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| T |
15801649 |
acctttgttccacaacactgaggaactaaatccaacatagcctctagacactctttgcacccatccttactaaggtctctattacactgcaccaaaccat |
15801748 |
T |
|
| Q |
116 |
accttttgtcagtgtcactccaattgaactcatcagttgcccaattgagactcgctactgtagtcactttgcgtatcaaactcgtcatgctattctcagc |
215 |
Q |
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| T |
15801749 |
accttttctcggtgtcactccaaatgaactcacccgttgcccaaacgggactggattctgtagtcactttgcgtatcaaactcatcatgttattctcagc |
15801848 |
T |
|
| Q |
216 |
tttcacaggttctg |
229 |
Q |
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|||| || |||||| |
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| T |
15801849 |
tttcccaagttctg |
15801862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 146
Target Start/End: Original strand, 15815129 - 15815259
Alignment:
| Q |
16 |
acctttgttccacaacactgaggaactctttccaacatagcctccaaacactgtcggcagccatccttactaagctcggtattacactgcaccaagccat |
115 |
Q |
| |
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||||||||||||||||| ||||||||| | |||||||||| |||||||| | || ||| || || || |||| || |||||||||||||| | |||| |
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| T |
15815129 |
acctttgttccacaacattgaggaactttatccaacatagtttccaaacaatatctgcacccgtcttttgtaaggtcactattacactgcacccaaccat |
15815228 |
T |
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| Q |
116 |
accttttgtcagtgtcactccaattgaactc |
146 |
Q |
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||||||| || ||||||||||||| |||||| |
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| T |
15815229 |
accttttctcggtgtcactccaatcgaactc |
15815259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 15699881 - 15699962
Alignment:
| Q |
3 |
aactacccatccaacctttgttccacaacactgaggaactctttccaacatagcctccaaacactgtcggcagccatcctta |
84 |
Q |
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|||| ||||| | ||||||||||||||||||| |||||| ||||||| ||||||||||||||||| ||| || |||||| |
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| T |
15699881 |
aacttcccatgctacctttgttccacaacacttgggaactaagtccaacacagcctccaaacactgtctgcacccttcctta |
15699962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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