View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16629_low_68 (Length: 221)

Name: NF16629_low_68

Description: NF16629

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF16629_low_68

[»] chr3 (1 HSPs)

[»] chr8 (1 HSPs)

Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 1)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 186; E-Value: 1e-101

Query Start/End: Original strand, 18 - 207

Target Start/End: Original strand, 43620824 - 43621013

Alignment:

Q	18	aaagcaaaagataacagaagaaaaaacctaataatgaaaggaatgaagccatatgtggttgtgtttgtgatacaaactatatacgcaattatgtttctac	117	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	43620824	aaagcaaaagataacagaagaaaaaacctaataatgaaaggaatgaagccatatgtggttgtgtttgtgatacaaactatatacgcaattatgtttctac	43620923	T

Q	118	tctcaaaagctgcatttgatcatggcatcaacaatttcatctttgtgttctatagacaagcagtagcaaccatattccttatcccctttg	207	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|
T	43620924	tctcaaaagctgcatttgatcatggcatcaacaatttcatctttgtgttctatagacaagcagtagcaaccatattccttatcccttttg	43621013	T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 38; E-Value: 0.000000000001

Query Start/End: Original strand, 107 - 176

Target Start/End: Original strand, 38762102 - 38762171

Alignment:

Q	107	tatgtttctactctcaaaagctgcatttgatcatggcatcaacaatttcatctttgtgttctatagacaa	176	Q
		\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|
T	38762102	tatgtttcttctgtcaaaagctgcattcgaccatggcatgaacaatttcgtctttgttttctacagacaa	38762171	T

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