View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16629_low_7 (Length: 519)
Name: NF16629_low_7
Description: NF16629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16629_low_7 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 11 - 519
Target Start/End: Complemental strand, 36622235 - 36621727
Alignment:
| Q |
11 |
agcaaagggaagagatagatcatgtgagaaaagctaggcaaatgcaattttggtgggaaagccctgttgatgaacttggcttgaatgaattgctccagtt |
110 |
Q |
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| T |
36622235 |
agcaaggggaagagatagatcatgtgagaaaagctaggcaaatgcaattttggtgggaaagccctgttgatgaacttggcttgaatgaattgctccaatt |
36622136 |
T |
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| Q |
111 |
aaaggtttctattgaggacctgaggaagaatcttggaaaaattgctagcaaatgcatgatggaacaatccaatgtttcttcatcaaatattggagctaat |
210 |
Q |
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| T |
36622135 |
aaaggtttctattgaggacctcaggaagaatcttggaaaaattgctagcaaatgcatgatggaacaatccaatgtttcttcatcaaatattggagctaat |
36622036 |
T |
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| Q |
211 |
ggatttttaggtgtagggattaatattgcttccccacttcctaatagctattatctaggttttcgaatttgacatctttgaacattgatttcttatggtt |
310 |
Q |
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| T |
36622035 |
ggatttttaggtgtagggattaatattgcttccccacttcctaatagctattatctaggttttcgaatttgacatctttgaacattgatttcttatggtt |
36621936 |
T |
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| Q |
311 |
tggctttggatccaaatgagtgaatcatgcactagtacatcactagttatttgttcacttgcaatttatttgtttgaaattttgttggaaataatttgtt |
410 |
Q |
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| T |
36621935 |
tggctttggatccaaatgagtgaatcatgcactagtacatcactagttatttgttcacttccaatttatttgtttgaaattttgttggaaataatttgtt |
36621836 |
T |
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| Q |
411 |
cccacatcaaggactcattgtcaataagtttttcacattatcattgattggattgagtccttatttttggatgtgcatatgtcaacaatatagtacatgt |
510 |
Q |
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| T |
36621835 |
cccacatcaaggactcattgtcaataaatttttcacattatcattgattggtttgagtccttatttttggatgtgtatatgtcaacaatatagcacatgt |
36621736 |
T |
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| Q |
511 |
agttgcatg |
519 |
Q |
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| T |
36621735 |
agttgcatg |
36621727 |
T |
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