View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16630_high_13 (Length: 268)
Name: NF16630_high_13
Description: NF16630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16630_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 15 - 214
Target Start/End: Complemental strand, 48590892 - 48590693
Alignment:
| Q |
15 |
gggagggtcggcaacatgtgactgtcttgctttctcatgatgaaactaaaaatgtcgttttttattaaaacaaggatagtgttatgcagatctttttacc |
114 |
Q |
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| T |
48590892 |
gggagggtcggcaacatgtgactgtcttgctttctcatgatgaaactacaaatgtcgttttttattaaaacaaggatagtgttatgcagatctttttacc |
48590793 |
T |
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| Q |
115 |
actggttggttgttgcttaattaattgaaattacttgcaggaattttttgtttgaaccgaaaaacagtaaaaataaaaacaattgtaccccagacacaac |
214 |
Q |
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| T |
48590792 |
actggttggttgttgcttaagtaattaaaattacttgcaggaattttttgtttgaactgaaaaacaataaaaataaaaacaattgtactcccgacacaac |
48590693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 15 - 214
Target Start/End: Complemental strand, 48600587 - 48600388
Alignment:
| Q |
15 |
gggagggtcggcaacatgtgactgtcttgctttctcatgatgaaactaaaaatgtcgttttttattaaaacaaggatagtgttatgcagatctttttacc |
114 |
Q |
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| T |
48600587 |
gggagggtcggcaacatgtgactgtcttgctttctcatgatgaaactacaaatgtcgttttttattaaaacaaggatagtgttatgcagatctttttacc |
48600488 |
T |
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| Q |
115 |
actggttggttgttgcttaattaattgaaattacttgcaggaattttttgtttgaaccgaaaaacagtaaaaataaaaacaattgtaccccagacacaac |
214 |
Q |
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| T |
48600487 |
actggttggttgttgcttaagtaattaaaattacttgcaggaattttttgtttgaactgaaaaacagtaaaaataaaaacaattttactcccgacacaac |
48600388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 11 - 214
Target Start/End: Complemental strand, 48595978 - 48595775
Alignment:
| Q |
11 |
caaagggagggtcggcaacatgtgactgtcttgctttctcatgatgaaactaaaaatgtcgttttttattaaaacaaggatagtgttatgcagatctttt |
110 |
Q |
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||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||| |
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| T |
48595978 |
caaagggagggtcggtaacatgtgactgtcttgctttctcattatgaaactacaaatatcgttttttattaaaacaaggatagtgttatgtagatctttt |
48595879 |
T |
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| Q |
111 |
taccactggttggttgttgcttaattaattgaaattacttgcaggaattttttgtttgaaccgaaaaacagtaaaaataaaaacaattgtaccccagaca |
210 |
Q |
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| T |
48595878 |
taccactggttggttgttgctcaagtaattaaaattacttgcaggaattttttgtttgaactgaaaaacaataaaaataaaaacaattgtactcccgaca |
48595779 |
T |
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| Q |
211 |
caac |
214 |
Q |
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|||| |
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| T |
48595778 |
caac |
48595775 |
T |
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