View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16630_high_19 (Length: 227)
Name: NF16630_high_19
Description: NF16630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16630_high_19 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 13 - 212
Target Start/End: Complemental strand, 28013975 - 28013776
Alignment:
| Q |
13 |
cagagatgagaattaccatagaagaggagagtttttccaactagttggcctaagatcctgactcctgagaataagaaaaaataaacaaaagagaactatt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28013975 |
cagagatgagaattaccatagaagaggagagtttttccaattagttggcctaagatcctgactcctgagaataagaaaaaataaacaaaagagaactatt |
28013876 |
T |
|
| Q |
113 |
aatgattgtagattatattagaaatggttcagaaagaacaaagtggacaagaatgaaacagggaaaagaagcttaccagcacttgtatagcagagatttg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28013875 |
aatgattgtagattatattagaaatggttcagaaagaacaaattggaaaagaatgaaacgtggaaaagaagcttaccagcacttgtatagcagagatttg |
28013776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 54960855 - 54960889
Alignment:
| Q |
19 |
tgagaattaccatagaagaggagagtttttccaac |
53 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
54960855 |
tgagaattaccatagaagaggagagtttttccaac |
54960889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University