View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16630_high_2 (Length: 462)
Name: NF16630_high_2
Description: NF16630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16630_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 75 - 447
Target Start/End: Original strand, 32012017 - 32012393
Alignment:
| Q |
75 |
aagaagttgaaggctttgcatgaggtgtacgagggaggatgcatgagtcatcgttcagacaggccctagatataagttgcctttattggctcaagcatgt |
174 |
Q |
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| T |
32012017 |
aagaagttgaaggctttgcatgaggggaacaggggaggatgcatgagtcattgtttagacaggccctagatataagttgtctttattggctcaagcatgt |
32012116 |
T |
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| Q |
175 |
catc----acattattgaatatggtatattgtctgcatttgtcgagagatgacacgacaaggcttctagctttcatcttctgattgggaagatggcaatg |
270 |
Q |
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| T |
32012117 |
catttataacattattgaatatggtatattgtctgcatttgttgagagatgacacgacaaggcttctagctttcatcttctgattgggaagatggcaatg |
32012216 |
T |
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| Q |
271 |
acactacatgatgtttcatgtctgttgcatctccccatcgagggccttctcatggaccatgaagttattgtttccaaacttgttgtggtagatatgatgg |
370 |
Q |
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| T |
32012217 |
acactacatgatgtttcatgtctgttgcatctccccatcgagggccttctcctggaccatgaagttattgtttcctaacttattgtggtagatatgatgg |
32012316 |
T |
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| Q |
371 |
ttgagttgtcatgggctaaatcggaggatcctgagttctagatgggagccatgaaggtgctcatgcaccttacaatt |
447 |
Q |
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| T |
32012317 |
ttgagttgttatgggctaaatcggagtatgctgagttctagatgggtgccatgaaggtgctcatgcaccttacaatt |
32012393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 6e-32; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 55697029 - 55697099
Alignment:
| Q |
3 |
acgcaataacaacctagattaagagatcctggataaattaaatatagcttgaggaagttgataatcaaatt |
73 |
Q |
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| T |
55697029 |
acgcaataacaacctagattaagagatcctggataaattaaatatagcttgaggaagttgataatcaaatt |
55697099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 27 - 73
Target Start/End: Original strand, 55697407 - 55697453
Alignment:
| Q |
27 |
gatcctggataaattaaatatagcttgaggaagttgataatcaaatt |
73 |
Q |
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| T |
55697407 |
gatcctggataaattaaatatagcttgaggaagttgataatcaaatt |
55697453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 332
Target Start/End: Original strand, 7033095 - 7033161
Alignment:
| Q |
266 |
caatgacactacatgatgtttcatgtctgttgcatctccccatcgagggccttctcatggaccatga |
332 |
Q |
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| T |
7033095 |
caatgacacttaatgatatgtcatgtttgttgcatctccccatcgagggcatgctcttggaccatga |
7033161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 237 - 315
Target Start/End: Complemental strand, 17362967 - 17362889
Alignment:
| Q |
237 |
tagctttcatcttctgattgggaagatggcaatgacactacatgatgtttcatgtctgttgcatctccccatcgagggc |
315 |
Q |
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| T |
17362967 |
tagcttccatcttctgatgggggagatgacagtgacacttgatgacgtgtcatgtctgctgcatctcccaatcgagggc |
17362889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 199 - 309
Target Start/End: Original strand, 42229682 - 42229792
Alignment:
| Q |
199 |
ttgtctgcatttgtcgagagatgacacgacaaggcttctagctttcatcttctgattgggaagatggcaatgacactacatgatgtttcatgtctgttgc |
298 |
Q |
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|||| ||| ||||| ||| |||||||||| || | |||||||| |||||||||| || | |||| | ||||||| ||||||| ||||||||| ||| |
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| T |
42229682 |
ttgtttgcttttgttgagtgatgacacgaggagtcgtctagcttctatcttctgataagggatatggaagtgacacttgatgatgtgtcatgtctgatgc |
42229781 |
T |
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| Q |
299 |
atctccccatc |
309 |
Q |
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| T |
42229782 |
atctccccatc |
42229792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 304
Target Start/End: Complemental strand, 43453229 - 43453163
Alignment:
| Q |
238 |
agctttcatcttctgattgggaagatggcaatgacactacatgatgtttcatgtctgttgcatctcc |
304 |
Q |
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| T |
43453229 |
agcttccatcttccgtttggggagatgacaatgacacttgatgatgtgtcatgtttgttgcatctcc |
43453163 |
T |
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