View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16630_high_3 (Length: 360)
Name: NF16630_high_3
Description: NF16630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16630_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 13 - 342
Target Start/End: Original strand, 40510762 - 40511093
Alignment:
| Q |
13 |
aaaatatcagttgta-agcccaatttatcattcaaaaaacaaagtttcgtctcatctcaatcccacttcacaagcaagattaaattaatactcccaccac |
111 |
Q |
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| T |
40510762 |
aaaatatcagttgtagagcccaatttatcattcaaaaaacaaagtttcgtctcatctcaatcccacttcacaagcaagattaaattaatactcccaccac |
40510861 |
T |
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| Q |
112 |
attaacattaaca------attacaacaatttattactttagtatatactgttgcacattccccttttgttacnnnnnnncaaagtacatcacattcatg |
205 |
Q |
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| T |
40510862 |
attaacattaacattaacaattacaacaatttattactttagtatatactgttgcacattccccttttgttacaaaaaaacaaagtacatcacattcatg |
40510961 |
T |
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| Q |
206 |
caagttaattataacaatgtatataaatcattaaatacgtgtatatcactcttaagccaagtatttttgttctttgtaggccctgaagctgaccctcccc |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
40510962 |
caagttaattataacaatgtatataaatcattaaatacgtgtatatcactcttaagccaagtatttttgttctttgtaggccctgaagctgaccct-ccc |
40511060 |
T |
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| Q |
306 |
aataataaataaatagaacctcaaaagtgtgaaaaat |
342 |
Q |
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||| |||||||||||||||||||||||||||||| |
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| T |
40511061 |
aat----aataaatagaacctcaaaagtgtgaaaaat |
40511093 |
T |
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