View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16630_high_5 (Length: 342)
Name: NF16630_high_5
Description: NF16630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16630_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 14 - 323
Target Start/End: Complemental strand, 48816179 - 48815866
Alignment:
| Q |
14 |
gaatagaggtataaattgtctgactacttgtgtcgattgcaaccacaactacgaggacaaacttcacattttatttgaatgtctaat----ggatgttca |
109 |
Q |
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| T |
48816179 |
gaatagaggtataaattgtctgactacttgtgtcgattgcaaccacaactacgaggacaaaattcacattttatttgaatgtctaattaatggatgttca |
48816080 |
T |
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| Q |
110 |
agtgtggcgaaatggtgttgttttgtaagatgcaactgtaactctactacaagaatataacgctgcagcattgatttttcttttattgcaatggttgcct |
209 |
Q |
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| T |
48816079 |
agtgtggcgaaatggtgttgttttgtaagatgcaactgtaactctactacaagaatataacgctgcaacattgatttttcttttattgcaaaggttgcct |
48815980 |
T |
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| Q |
210 |
caaaccaaggttgcatgttttggcacaatcctataaagcatttggaagcacaataattcaaacatttggcaacatgttatatatacacgaccgctcatat |
309 |
Q |
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| T |
48815979 |
caaaccaaggttgcatgttttggcacaatcctataaagcatttggaagcacaataattcaaacatttggcaacatgttatatatacacgaccgctcatat |
48815880 |
T |
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| Q |
310 |
tttagagtgtgcca |
323 |
Q |
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| T |
48815879 |
tttagagtgtgcca |
48815866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 16 - 260
Target Start/End: Original strand, 21623153 - 21623397
Alignment:
| Q |
16 |
atagaggtataaattgtctgactacttgtgtcgattgcaaccacaactacgaggacaaacttcacattttatttgaatgtctaatggatgttcaagtgtg |
115 |
Q |
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| T |
21623153 |
atagaggtataaattgttcgactacatgtgttgtttgcaatcacaactacgaggacgaaattcacattttatttgaatggccaagagttgttcaagtgtg |
21623252 |
T |
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| Q |
116 |
gcgaaatggtgttgttttgtaagatgcaactgtaactctactacaagaatataacgctgcagcattgatttttcttttattgcaatggttgcctcaaacc |
215 |
Q |
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| T |
21623253 |
gcgaaatggtggtcttttgcaagatgtaactgcaactttacatcaaggttataacgctacgacatcaatttttctcttattgcagcgttttcctaaaacc |
21623352 |
T |
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| Q |
216 |
aaggttgcatgttttggcacaatcctataaagcatttggaagcac |
260 |
Q |
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|||||| ||| |||| ||||||||||| || |||||||||||| |
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| T |
21623353 |
aaggttacataatttgccacaatcctatggagaatttggaagcac |
21623397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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