View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16630_high_6 (Length: 341)

Name: NF16630_high_6
Description: NF16630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16630_high_6
NF16630_high_6
[»] chr1 (7 HSPs)
chr1 (15-324)||(34478734-34479058)
chr1 (168-223)||(9955100-9955155)
chr1 (168-223)||(25146833-25146888)
chr1 (164-223)||(9327280-9327339)
chr1 (168-223)||(23528665-23528720)
chr1 (159-223)||(12513281-12513345)
chr1 (177-229)||(18891747-18891799)
[»] chr2 (5 HSPs)
chr2 (168-223)||(1404792-1404847)
chr2 (174-220)||(1690830-1690876)
chr2 (168-223)||(31238042-31238097)
chr2 (168-223)||(31578014-31578069)
chr2 (164-229)||(15516618-15516683)
[»] chr6 (10 HSPs)
chr6 (168-222)||(26053362-26053416)
chr6 (168-222)||(26073415-26073469)
chr6 (168-223)||(6943525-6943580)
chr6 (168-223)||(30912477-30912532)
chr6 (168-218)||(7223528-7223578)
chr6 (168-229)||(2912306-2912367)
chr6 (168-219)||(15528179-15528230)
chr6 (164-223)||(17250062-17250121)
chr6 (168-222)||(10509089-10509143)
chr6 (174-223)||(27233342-27233391)
[»] chr8 (8 HSPs)
chr8 (168-223)||(5922058-5922113)
chr8 (159-223)||(15294670-15294734)
chr8 (159-223)||(15475039-15475103)
chr8 (164-215)||(6292415-6292466)
chr8 (168-223)||(17647002-17647057)
chr8 (168-222)||(477113-477167)
chr8 (175-223)||(3094318-3094366)
chr8 (171-223)||(22910267-22910319)
[»] chr7 (5 HSPs)
chr7 (168-223)||(5058538-5058593)
chr7 (168-221)||(11326395-11326448)
chr7 (168-223)||(8346598-8346653)
chr7 (168-223)||(26281374-26281429)
chr7 (168-216)||(44944921-44944969)
[»] chr5 (8 HSPs)
chr5 (168-223)||(20923727-20923782)
chr5 (168-223)||(23172497-23172552)
chr5 (168-223)||(18051595-18051650)
chr5 (164-223)||(18843720-18843779)
chr5 (168-223)||(19042454-19042509)
chr5 (168-223)||(22645784-22645839)
chr5 (168-223)||(27340251-27340306)
chr5 (168-223)||(43234877-43234932)
[»] chr4 (3 HSPs)
chr4 (168-219)||(4156772-4156823)
chr4 (168-223)||(5362028-5362083)
chr4 (164-223)||(9770117-9770176)
[»] chr3 (5 HSPs)
chr3 (168-223)||(28745779-28745834)
chr3 (168-223)||(3449356-3449411)
chr3 (168-223)||(24649754-24649809)
chr3 (168-223)||(29067293-29067348)
chr3 (168-223)||(30727756-30727811)


Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 15 - 324
Target Start/End: Complemental strand, 34479058 - 34478734
Alignment:
Q  15 cacagattctacaaattcatacacgtgtgtcgaatgaagccaaacctgcatagaaatgaagtctctacgagggt-------cgaatgaa---gccaaaca 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||       | ||   |   |  |||||    
T  34479058 cacagattctacaaattcatacacgtgtgtcgaatgaagccaaacctgcatagaaatgaagtctctacgagagttattatcctaagacacggggtaaaca 34478959  T
Q  105 tgcatgtcagtgacaataatctaattgtgtttataaacaagggtaaggtattgtaat-------ggtgttaaaatcccgacttaaatcttaaaatttgga 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||   | ||||||||       | |||||||||||||||||||||||||||||||||     
T  34478958 tgcatgtcagtgacaataatctaattgtgtttataaacaagggtc--gaattgtaataagcattgttgttaaaatcccgacttaaatcttaaaatttggg 34478861  T
Q  198 attttgtgactttcttcaccttcaaccattcatataatgtaaatagtgatcttgttgcattagccacacaaatgttaagaactagtaatattgaccccca 297  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34478860 attttgtgactttcttcaccttcaacgattcatatcatgtaaatagtgatcttgttgcattagccacacaaatgttaagaactagtaatattgaccccca 34478761  T
Q  298 aaaagtgaaaatgtccaaacaagatat 324  Q
    |||||||||||||||||||||||||||    
T  34478760 aaaagtgaaaatgtccaaacaagatat 34478734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 223
Target Start/End: Complemental strand, 9955155 - 9955100
Alignment:
Q  168 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 223  Q
    |||||||| ||||||||| |||||||| | |||||| |||||||||||||||||||    
T  9955155 aaaatcccaacttaaatcctaaaatttaggattttgcgactttcttcaccttcaac 9955100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 223
Target Start/End: Complemental strand, 25146888 - 25146833
Alignment:
Q  168 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 223  Q
    ||||||| |||||||||| |||||||  |||||||| |||||||||||||||||||    
T  25146888 aaaatcctgacttaaatcctaaaattcagaattttgcgactttcttcaccttcaac 25146833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 223
Target Start/End: Complemental strand, 9327339 - 9327280
Alignment:
Q  164 tgttaaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 223  Q
    ||||||||||| |||||||||| |||||||| |  ||||| |||||||| ||||||||||    
T  9327339 tgttaaaatcctgacttaaatcctaaaatttagggttttgcgactttctacaccttcaac 9327280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 168 - 223
Target Start/End: Original strand, 23528665 - 23528720
Alignment:
Q  168 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 223  Q
    |||||||| |||||||||||||||||  | |||||| ||||||||||| |||||||    
T  23528665 aaaatcccaacttaaatcttaaaattcaggattttgcgactttcttcatcttcaac 23528720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 223
Target Start/End: Original strand, 12513281 - 12513345
Alignment:
Q  159 aatggtgttaaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 223  Q
    |||| ||| |||||||||||||||||| || ||| | | |||||| ||||||||||| |||||||    
T  12513281 aatgttgtcaaaatcccgacttaaatcctacaatctaggattttgcgactttcttcagcttcaac 12513345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 18891799 - 18891747
Alignment:
Q  177 acttaaatcttaaaatttggaattttgtgactttcttcaccttcaaccattca 229  Q
    |||||||||||||||||| || |||| ||||||| |||| ||||||| |||||    
T  18891799 acttaaatcttaaaatttagatttttttgactttattcatcttcaacgattca 18891747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 168 - 223
Target Start/End: Original strand, 1404792 - 1404847
Alignment:
Q  168 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 223  Q
    |||||||||||||||||  |||||||| | ||||||||||||||||||||||||||    
T  1404792 aaaatcccgacttaaattctaaaatttaggattttgtgactttcttcaccttcaac 1404847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 174 - 220
Target Start/End: Complemental strand, 1690876 - 1690830
Alignment:
Q  174 ccgacttaaatcttaaaatttggaattttgtgactttcttcaccttc 220  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||    
T  1690876 ccgacttaaatcttaaaatttaggattttgtgactttcttcaccttc 1690830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 168 - 223
Target Start/End: Complemental strand, 31238097 - 31238042
Alignment:
Q  168 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 223  Q
    |||||||||||||||||| |||||| | | ||||||  ||||||||||||||||||    
T  31238097 aaaatcccgacttaaatcctaaaatctaggattttgccactttcttcaccttcaac 31238042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 168 - 223
Target Start/End: Original strand, 31578014 - 31578069
Alignment:
Q  168 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 223  Q
    ||||||||||||||||| |||||||||   |||||| || ||||||||||||||||    
T  31578014 aaaatcccgacttaaatgttaaaatttaagattttgcgattttcttcaccttcaac 31578069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 15516683 - 15516618
Alignment:
Q  164 tgttaaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaaccattca 229  Q
    |||||||||| | ||||||||||||| |||  | |||||| |||||| |||||||||||| |||||    
T  15516683 tgttaaaatcgcaacttaaatcttaatattcagcattttgcgactttattcaccttcaacaattca 15516618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 26053416 - 26053362
Alignment:
Q  168 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaa 222  Q
    ||||||||||||||||||||||||| | | |||||| ||||||||||||||||||    
T  26053416 aaaatcccgacttaaatcttaaaatctaggattttgcgactttcttcaccttcaa 26053362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 26073469 - 26073415
Alignment:
Q  168 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaa 222  Q
    ||||||||||||||||||||||||| | | |||||| ||||||||||||||||||    
T  26073469 aaaatcccgacttaaatcttaaaatctaggattttgcgactttcttcaccttcaa 26073415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 223
Target Start/End: Complemental strand, 6943580 - 6943525
Alignment:
Q  168 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 223  Q
    |||||||||||||||||| |||||||  | |||||| |||||||||||||||||||    
T  6943580 aaaatcccgacttaaatcctaaaattcaggattttgcgactttcttcaccttcaac 6943525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 223
Target Start/End: Complemental strand, 30912532 - 30912477
Alignment:
Q  168 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 223  Q
    |||||||| ||||||||| |||||||| | |||||| |||||||||||||||||||    
T  30912532 aaaatcccaacttaaatcctaaaatttaggattttgcgactttcttcaccttcaac 30912477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 218
Target Start/End: Original strand, 7223528 - 7223578
Alignment:
Q  168 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcacct 218  Q
    |||||||||||||||||| |||||||| | |||||| ||||||||||||||    
T  7223528 aaaatcccgacttaaatcctaaaatttaggattttgcgactttcttcacct 7223578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 2912367 - 2912306
Alignment:
Q  168 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaaccattca 229  Q
    ||||||||||||||||||||||||||| | ||||||  ||||||| || ||||||| |||||    
T  2912367 aaaatcccgacttaaatcttaaaatttaggattttgcaactttctccatcttcaacgattca 2912306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 168 - 219
Target Start/End: Complemental strand, 15528230 - 15528179
Alignment:
Q  168 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcacctt 219  Q
    |||||||||||||||||| |||||||  | |||||| |||||||||||||||    
T  15528230 aaaatcccgacttaaatcctaaaattcaggattttgcgactttcttcacctt 15528179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 223
Target Start/End: Original strand, 17250062 - 17250121
Alignment:
Q  164 tgttaaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 223  Q
    |||||||||||||||||||||| ||||||   | ||||||  ||||||||||||||||||    
T  17250062 tgttaaaatcccgacttaaatcctaaaatccaggattttgcaactttcttcaccttcaac 17250121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 10509143 - 10509089
Alignment:
Q  168 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaa 222  Q
    ||||||| |||||||||| |||||||  ||| ||||||||||||||||| |||||    
T  10509143 aaaatccagacttaaatcctaaaattcagaaatttgtgactttcttcacattcaa 10509089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 223
Target Start/End: Complemental strand, 27233391 - 27233342
Alignment:
Q  174 ccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 223  Q
    |||||||||||| ||||||   | ||||||||||||||||||||||||||    
T  27233391 ccgacttaaatcctaaaatccaggattttgtgactttcttcaccttcaac 27233342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 223
Target Start/End: Original strand, 5922058 - 5922113
Alignment:
Q  168 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 223  Q
    |||||||||||||||||| ||||||   | ||||||||||||||||||||||||||    
T  5922058 aaaatcccgacttaaatcctaaaatccaggattttgtgactttcttcaccttcaac 5922113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 223
Target Start/End: Original strand, 15294670 - 15294734
Alignment:
Q  159 aatggtgttaaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 223  Q
    |||| ||| |||||||||||||||||| |||||||  | |||||| |||||| ||||||||||||    
T  15294670 aatgttgtaaaaatcccgacttaaatcctaaaattcaggattttgcgacttttttcaccttcaac 15294734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 223
Target Start/End: Original strand, 15475039 - 15475103
Alignment:
Q  159 aatggtgttaaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 223  Q
    |||| ||| |||||||||||||||||| |||||||  | |||||| |||||| ||||||||||||    
T  15475039 aatgttgtaaaaatcccgacttaaatcctaaaattcaggattttgcgacttttttcaccttcaac 15475103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 215
Target Start/End: Complemental strand, 6292466 - 6292415
Alignment:
Q  164 tgttaaaatcccgacttaaatcttaaaatttggaattttgtgactttcttca 215  Q
    ||||||||| |||||||||||||||||||||   ||||||||||||| ||||    
T  6292466 tgttaaaataccgacttaaatcttaaaatttaagattttgtgacttttttca 6292415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 168 - 223
Target Start/End: Original strand, 17647002 - 17647057
Alignment:
Q  168 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 223  Q
    ||||| |||||||||||| |||||||  | |||||| |||||||||||||||||||    
T  17647002 aaaattccgacttaaatcataaaattcaggattttgcgactttcttcaccttcaac 17647057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 477167 - 477113
Alignment:
Q  168 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaa 222  Q
    ||||||| |||||||||| ||||||   | |||||||||||||||||||||||||    
T  477167 aaaatcctgacttaaatcctaaaatccaggattttgtgactttcttcaccttcaa 477113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 223
Target Start/End: Complemental strand, 3094366 - 3094318
Alignment:
Q  175 cgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 223  Q
    |||||||||||||||||||  | ||||||  ||||||||||||||||||    
T  3094366 cgacttaaatcttaaaattcaggattttgctactttcttcaccttcaac 3094318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 223
Target Start/End: Complemental strand, 22910319 - 22910267
Alignment:
Q  171 atcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 223  Q
    ||||||||||||||| |||||||| | |||||  |||||||||||| ||||||    
T  22910319 atcccgacttaaatcctaaaatttaggattttacgactttcttcacattcaac 22910267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 223
Target Start/End: Original strand, 5058538 - 5058593
Alignment:
Q  168 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 223  Q
    |||||||||||||||||| |||||||  |||||||| || ||||||||||||||||    
T  5058538 aaaatcccgacttaaatcctaaaattcagaattttgcgattttcttcaccttcaac 5058593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 168 - 221
Target Start/End: Original strand, 11326395 - 11326448
Alignment:
Q  168 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttca 221  Q
    |||||||| ||||||||| |||||||| | |||||| |||||||||||||||||    
T  11326395 aaaatcccaacttaaatcctaaaatttaggattttgcgactttcttcaccttca 11326448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 168 - 223
Target Start/End: Complemental strand, 8346653 - 8346598
Alignment:
Q  168 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 223  Q
    ||||||| ||| ||||| ||||||||| | |||||| |||||||||||||||||||    
T  8346653 aaaatcctgacctaaatattaaaatttaggattttgcgactttcttcaccttcaac 8346598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 168 - 223
Target Start/End: Complemental strand, 26281429 - 26281374
Alignment:
Q  168 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 223  Q
    ||||| |||||||||||| |||||||  | |||||| |||||||||||||||||||    
T  26281429 aaaattccgacttaaatcataaaattcaggattttgcgactttcttcaccttcaac 26281374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 216
Target Start/End: Complemental strand, 44944969 - 44944921
Alignment:
Q  168 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcac 216  Q
    |||||||||||||||||| |||||||  | |||||| ||||||||||||    
T  44944969 aaaatcccgacttaaatcctaaaattcaggattttgcgactttcttcac 44944921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 223
Target Start/End: Original strand, 20923727 - 20923782
Alignment:
Q  168 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 223  Q
    |||||||||||||||||| ||||||   |||||||| |||||||||||||||||||    
T  20923727 aaaatcccgacttaaatcctaaaatccagaattttgcgactttcttcaccttcaac 20923782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 223
Target Start/End: Complemental strand, 23172552 - 23172497
Alignment:
Q  168 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 223  Q
    |||||||||||||||||| |||||||| | |||||| ||||||||||| |||||||    
T  23172552 aaaatcccgacttaaatcctaaaatttaggattttgcgactttcttcatcttcaac 23172497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 168 - 223
Target Start/End: Complemental strand, 18051650 - 18051595
Alignment:
Q  168 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 223  Q
    |||||||||||||||||| |||||| | | |||||| ||||||||||| |||||||    
T  18051650 aaaatcccgacttaaatcctaaaatataggattttgcgactttcttcaacttcaac 18051595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 223
Target Start/End: Original strand, 18843720 - 18843779
Alignment:
Q  164 tgttaaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 223  Q
    ||||||||| |||||||||||| || ||||  | |||||| |||||||||||||||||||    
T  18843720 tgttaaaattccgacttaaatcctataattcaggattttgcgactttcttcaccttcaac 18843779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 168 - 223
Target Start/End: Complemental strand, 19042509 - 19042454
Alignment:
Q  168 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 223  Q
    |||||||| ||||||||  ||||||||   ||||||||||||||||||||||||||    
T  19042509 aaaatcccaacttaaattctaaaatttaagattttgtgactttcttcaccttcaac 19042454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 168 - 223
Target Start/End: Complemental strand, 22645839 - 22645784
Alignment:
Q  168 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 223  Q
    |||||||||||||||||| ||||||   | |||||| |||||||||||||||||||    
T  22645839 aaaatcccgacttaaatcctaaaatccagtattttgcgactttcttcaccttcaac 22645784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 168 - 223
Target Start/End: Complemental strand, 27340306 - 27340251
Alignment:
Q  168 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 223  Q
    |||||||||||||||||| ||||||||   |||||| ||||||||||| |||||||    
T  27340306 aaaatcccgacttaaatcataaaatttatgattttgcgactttcttcatcttcaac 27340251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 168 - 223
Target Start/End: Original strand, 43234877 - 43234932
Alignment:
Q  168 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 223  Q
    |||||||| ||||||||| |||||||  | |||||| |||||||||||||||||||    
T  43234877 aaaatcccaacttaaatcctaaaattcaggattttgcgactttcttcaccttcaac 43234932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 219
Target Start/End: Original strand, 4156772 - 4156823
Alignment:
Q  168 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcacctt 219  Q
    ||||||||||||||||||||||||||| | ||||| ||||||| ||||||||    
T  4156772 aaaatcccgacttaaatcttaaaatttaggattttatgactttattcacctt 4156823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 168 - 223
Target Start/End: Complemental strand, 5362083 - 5362028
Alignment:
Q  168 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 223  Q
    |||||||||||||||||| |||||||  | |||||| ||||||||||| |||||||    
T  5362083 aaaatcccgacttaaatcctaaaattcaggattttgcgactttcttcatcttcaac 5362028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 223
Target Start/End: Original strand, 9770117 - 9770176
Alignment:
Q  164 tgttaaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 223  Q
    |||||||||| ||||||||||  |||||| | | ||||||||||||| ||||||||||||    
T  9770117 tgttaaaatctcgacttaaattctaaaatctaggattttgtgacttttttcaccttcaac 9770176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 223
Target Start/End: Original strand, 28745779 - 28745834
Alignment:
Q  168 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 223  Q
    |||||||||| ||||||| |||||||| | |||||| |||||||||||||||||||    
T  28745779 aaaatcccgatttaaatcctaaaatttaggattttgcgactttcttcaccttcaac 28745834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 168 - 223
Target Start/End: Complemental strand, 3449411 - 3449356
Alignment:
Q  168 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 223  Q
    |||||||||||||||||| |||||||  | |||||| ||||||||| |||||||||    
T  3449411 aaaatcccgacttaaatcctaaaattcaggattttgcgactttctttaccttcaac 3449356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 168 - 223
Target Start/End: Complemental strand, 24649809 - 24649754
Alignment:
Q  168 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 223  Q
    |||||||||||||||||| |||||| | | ||||| |||||| |||||||||||||    
T  24649809 aaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaac 24649754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 168 - 223
Target Start/End: Original strand, 29067293 - 29067348
Alignment:
Q  168 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 223  Q
    |||||||||||||||||  |||||||  | |||||| |||||||||||||||||||    
T  29067293 aaaatcccgacttaaattctaaaattcaggattttgcgactttcttcaccttcaac 29067348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 168 - 223
Target Start/End: Complemental strand, 30727811 - 30727756
Alignment:
Q  168 aaaatcccgacttaaatcttaaaatttggaattttgtgactttcttcaccttcaac 223  Q
    ||||||| |||||||||||||||||   |||||||  |||||||||||||||||||    
T  30727811 aaaatcctgacttaaatcttaaaatcctgaattttacgactttcttcaccttcaac 30727756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University