View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16630_low_10 (Length: 434)
Name: NF16630_low_10
Description: NF16630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16630_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 7 - 415
Target Start/End: Complemental strand, 35171779 - 35171371
Alignment:
| Q |
7 |
atgtcgaagaatatcccaacaaaatggaaaggaaaatgtcaagcaggacaagatttcaacacttctatgtgtaacttgaaattaattggagctagatatt |
106 |
Q |
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|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35171779 |
atgtcgaaaaacatcccaacaaaatggaaaggaaaatgtcaagcaggacaagatttcaacacttctatgtgtaacttgaaattaattggagctagatatt |
35171680 |
T |
|
| Q |
107 |
tcaacaaaggtgtgattgcatcaaaaccaaatgtcaaaatcagtatgaactcagctagagacacacaaggacatggtagtcacacatcatcaacggcagc |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35171679 |
tcaacaaaggtgtgattgcatcaaaaccaaatgtcaaaatcagtatgaactcagctagagacacacaaggacatggtagtcacacatcatcaacggcagc |
35171580 |
T |
|
| Q |
207 |
cggaaactatgtcaaagatgcttctttctttggttatgcaaaaggtgtagctagaggtattgcaccaaaagctagaattgcaatgtataaagtactttgg |
306 |
Q |
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| T |
35171579 |
cggaaactatgtcaaagatgcatctttctttggttatgcaaaaggtgtagctagaggtattgcaccaaaagctagaattgcaatgtataaagtactttgg |
35171480 |
T |
|
| Q |
307 |
gacgaaggtcgtctagcttctgatgttcttgcaggaatggatcaagctattgatgataatgttgatgttatctcaatctcattaggttttaatagtgttc |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35171479 |
gacgaaggtcgtctagcttctgatgttcttgcaggaatggatcaagctattgatgataatgttgatgttatctcaatctcattaggttttaatagtgttc |
35171380 |
T |
|
| Q |
407 |
cactttatg |
415 |
Q |
| |
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| T |
35171379 |
cactttatg |
35171371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 2e-40; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 28 - 200
Target Start/End: Original strand, 30098737 - 30098909
Alignment:
| Q |
28 |
aaatggaaaggaaaatgtcaagcaggacaagatttcaacacttctatgtgtaacttgaaattaattggagctagatatttcaacaaaggtgtgattgcat |
127 |
Q |
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||||||||||||| |||| || | || ||||| ||||| || || ||||||||||| ||||| ||||||||||||||||||||||||||||||||||| | |
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| T |
30098737 |
aaatggaaaggaacatgtgaaactggccaagaattcaatacctcaatgtgtaacttcaaattgattggagctagatatttcaacaaaggtgtgattgctt |
30098836 |
T |
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| Q |
128 |
caaaaccaaatgtcaaaatcagtatgaactcagctagagacacacaaggacatggtagtcacacatcatcaac |
200 |
Q |
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| T |
30098837 |
caaatccaaatgttacaatcagcatgaactcagctagagacactatagggcatggaactcacacatcatcaac |
30098909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 73 - 169
Target Start/End: Complemental strand, 30092084 - 30091988
Alignment:
| Q |
73 |
atgtgtaacttgaaattaattggagctagatatttcaacaaaggtgtgattgcatcaaaaccaaatgtcaaaatcagtatgaactcagctagagaca |
169 |
Q |
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| T |
30092084 |
atgtgcaacttcaaactgattggagctagatctttcaacaaaggtgtgattgcttcaaatccaaatgttagaatcaggatgaactcagctagagaca |
30091988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 211 - 415
Target Start/End: Complemental strand, 30091855 - 30091651
Alignment:
| Q |
211 |
aactatgtcaaagatgcttctttctttggttatgcaaaaggtgtagctagaggtattgcaccaaaagctagaattgcaatgtataaagtactttgggacg |
310 |
Q |
| |
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| T |
30091855 |
aactatgtcaatggaacttcttattttggttatgctaaaggagtagcaagaggcattgcaccaagagctaggcttgctatgtacaaagtcatttgggaag |
30091756 |
T |
|
| Q |
311 |
aaggtcgtctagcttctgatgttcttgcaggaatggatcaagctattgatgataatgttgatgttatctcaatctcattaggttttaatagtgttccact |
410 |
Q |
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| T |
30091755 |
agggtcttttggcttctgatgttttagctggaatggaccaagctattgctgatggtgttgatgtgatttcaatttctatgggatttgatggtgttccact |
30091656 |
T |
|
| Q |
411 |
ttatg |
415 |
Q |
| |
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||||| |
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|
| T |
30091655 |
ttatg |
30091651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 226 - 415
Target Start/End: Original strand, 30099073 - 30099262
Alignment:
| Q |
226 |
gcttctttctttggttatgcaaaaggtgtagctagaggtattgcaccaaaagctagaattgcaatgtataaagtactttgggacgaaggtcgtctagctt |
325 |
Q |
| |
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||||||| ||||||||||| ||||| |||| ||||| ||||||||||||||||| ||||| ||||| ||||| ||||||| || |||||| | || | |
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| T |
30099073 |
gcttcttattttggttatgccaaaggaatagcaagaggcattgcaccaaaagctaggattgctatgtacaaagtcatttgggaagagggtcgtttcgcct |
30099172 |
T |
|
| Q |
326 |
ctgatgttcttgcaggaatggatcaagctattgatgataatgttgatgttatctcaatctcattaggttttaatagtgttccactttatg |
415 |
Q |
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|||||||| | || || ||||| ||||||||| | || ||||||||| || ||||| ||| | || ||| || |||||||||||||| |
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| T |
30099173 |
ctgatgttttagctggcatggaccaagctattaacgacggtgttgatgtgatttcaatttcaatgggatttgatgatgttccactttatg |
30099262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 211 - 353
Target Start/End: Complemental strand, 30087875 - 30087733
Alignment:
| Q |
211 |
aactatgtcaaagatgcttctttctttggttatgcaaaaggtgtagctagaggtattgcaccaaaagctagaattgcaatgtataaagtactttgggacg |
310 |
Q |
| |
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||||||||||| | ||||||| ||||| ||||| ||||| ||||| ||||| |||||||||||||||| ||||| ||||| ||||| ||||||| | |
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| T |
30087875 |
aactatgtcaacggagcttcttattttggctatgctaaaggagtagcaagaggcattgcaccaaaagctaagattgctatgtacaaagtcatttgggaag |
30087776 |
T |
|
| Q |
311 |
aaggtcgtctagcttctgatgttcttgcaggaatggatcaagc |
353 |
Q |
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| | | | | |||||||||||| | || |||||||| ||||| |
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| T |
30087775 |
aggatgttatggcttctgatgttttagctggaatggaccaagc |
30087733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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